Wall clock time and date at job start Mon Mar 30 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47270 * 240.00305 * 3 2 1 5 5 H 1.48499 * 109.46835 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47060 * 119.99871 * 3 2 1 7 7 C 1.37887 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99468 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46876 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46740 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00051 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99840 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99921 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47283 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47269 * 305.00317 * 16 15 14 18 18 O 1.42903 * 109.46459 * 65.00211 * 16 15 14 19 19 C 1.50696 * 109.47222 * 184.99877 * 16 15 14 20 20 C 1.34514 * 125.78601 * 99.71968 * 19 16 15 21 21 C 1.41388 * 106.84128 * 179.88798 * 20 19 16 22 22 C 1.34518 * 106.83840 * 0.37014 * 21 20 19 23 23 O 1.34300 * 108.42199 * 359.77511 * 22 21 20 24 24 H 0.97000 * 119.99672 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46976 * 59.99953 * 9 7 2 26 26 H 1.09000 * 109.47292 * 300.00207 * 9 7 2 27 27 H 1.08995 * 109.46405 * 60.00098 * 10 9 7 28 28 H 1.08999 * 109.47130 * 299.99955 * 10 9 7 29 29 H 1.08992 * 109.47234 * 60.00089 * 11 10 9 30 30 H 1.08999 * 109.47254 * 299.99940 * 11 10 9 31 31 H 0.96999 * 119.99691 * 0.02562 * 14 12 11 32 32 H 1.09005 * 109.47040 * 60.00167 * 15 14 12 33 33 H 1.08999 * 109.47079 * 299.99869 * 15 14 12 34 34 H 0.96700 * 114.00311 * 60.00313 * 18 16 15 35 35 H 1.08001 * 126.58301 * 0.02766 * 20 19 16 36 36 H 1.07993 * 126.57944 * 180.16592 * 21 20 19 37 37 H 1.07994 * 125.78996 * 179.74841 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4800 -4.9872 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6517 -5.9111 -0.0032 14 7 2.0100 -7.4033 -0.0019 15 6 2.9619 -8.5168 -0.0031 16 6 2.1969 -9.8419 -0.0023 17 1 1.5056 -9.8619 0.8402 18 8 1.4643 -9.9695 -1.2227 19 6 3.1716 -10.9846 0.1202 20 6 3.4606 -11.6541 1.2506 21 6 4.4160 -12.6392 0.9103 22 6 4.6598 -12.5073 -0.4061 23 8 3.9033 -11.5036 -0.8793 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5572 0.8896 27 1 2.8724 -3.6048 0.8877 28 1 2.8711 -3.6041 -0.8923 29 1 0.8524 -5.0447 -0.8904 30 1 0.8543 -5.0450 0.8895 31 1 1.0563 -7.5805 -0.0020 32 1 3.5893 -8.4594 0.8864 33 1 3.5878 -8.4588 -0.8936 34 1 2.0169 -9.9595 -2.0161 35 1 3.0414 -11.4753 2.2297 36 1 4.8663 -13.3573 1.5794 37 1 5.3476 -13.1065 -0.9841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847576747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:05 Heat of formation + Delta-G solvation = -91.283021 kcal Electronic energy + Delta-G solvation = -19164.728913 eV Core-core repulsion = 15908.233810 eV Total energy + Delta-G solvation = -3256.495103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.99824 -39.61013 -37.81340 -34.48192 -34.09637 -33.45299 -32.05126 -31.25975 -28.66557 -27.21477 -24.25661 -23.06347 -22.18028 -21.12704 -20.55590 -19.74484 -18.44914 -17.31217 -16.48888 -16.31653 -16.21513 -16.07268 -15.34114 -15.07730 -14.66493 -14.37784 -13.78694 -13.42667 -13.35943 -13.24038 -12.95416 -12.42312 -12.23867 -12.04264 -11.79931 -11.30627 -10.87233 -10.76658 -10.59889 -10.53424 -10.32319 -9.72124 -9.65606 -9.26484 -9.09751 -9.02685 -8.89571 -8.29852 -5.95683 -3.97046 1.26469 2.19541 2.45809 2.90991 3.25718 3.38025 3.41325 3.45300 3.87665 4.17014 4.34236 4.51018 4.55685 4.65581 4.78393 5.14303 5.32722 5.37632 5.40253 5.50786 5.55632 5.64327 5.74220 5.74792 6.06325 6.26709 6.38865 6.66252 6.74887 6.95257 7.06216 7.18389 7.56682 7.73017 7.86111 8.05072 8.43104 8.49209 9.09836 9.66668 11.15807 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.055292 B = 0.002582 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.279897 B =10842.169079 C =11073.150158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.513 3.487 13 O -0.538 6.538 14 N -0.736 5.736 15 C 0.090 3.910 16 C 0.186 3.814 17 H 0.134 0.866 18 O -0.547 6.547 19 C -0.047 4.047 20 C -0.194 4.194 21 C -0.215 4.215 22 C -0.034 4.034 23 O -0.172 6.172 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.404 0.596 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.386 0.614 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -27.073 0.327 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.302 3.698 13 O -0.414 6.414 14 N -0.390 5.390 15 C -0.035 4.035 16 C 0.126 3.874 17 H 0.151 0.849 18 O -0.353 6.353 19 C -0.098 4.098 20 C -0.213 4.213 21 C -0.234 4.234 22 C -0.102 4.102 23 O -0.068 6.068 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.239 0.761 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.234 0.766 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.474 -26.693 0.432 27.069 hybrid contribution 0.631 0.545 -0.067 0.836 sum 5.106 -26.149 0.365 26.645 Atomic orbital electron populations 1.69950 1.06030 1.26638 1.51121 1.25023 0.94864 0.99238 0.95402 0.86647 0.79564 0.83068 0.78671 1.20237 1.21342 1.20244 1.21239 0.93147 0.91041 1.50262 0.92647 1.19129 0.93964 0.91429 0.97143 1.21450 0.98647 0.91558 1.01670 1.21845 0.98098 0.93908 1.03898 1.21315 0.90424 0.83584 0.74522 1.90684 1.17403 1.84699 1.48595 1.45997 1.10081 1.05345 1.77626 1.21962 0.92573 0.85140 1.03788 1.20686 0.89620 0.87217 0.89881 0.84884 1.86597 1.37386 1.95791 1.15528 1.23067 0.99034 1.00615 0.87114 1.21663 1.01996 0.98412 0.99235 1.21879 1.02562 1.02875 0.96084 1.24123 0.98394 0.92437 0.95227 1.83978 1.44698 1.40725 1.37398 0.93017 0.96585 0.96589 0.92727 0.92720 0.89213 0.89262 0.76097 0.90247 0.90880 0.76575 0.83088 0.83183 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 11 C -0.14 -2.27 5.70 -27.88 -0.16 -2.43 16 12 C 0.51 8.19 7.83 -10.98 -0.09 8.11 16 13 O -0.54 -10.81 15.98 5.56 0.09 -10.73 16 14 N -0.74 -8.40 5.50 -60.29 -0.33 -8.73 16 15 C 0.09 0.92 5.29 -4.04 -0.02 0.89 16 16 C 0.19 1.48 3.47 -27.88 -0.10 1.38 16 17 H 0.13 0.86 8.13 -51.93 -0.42 0.44 16 18 O -0.55 -4.63 13.27 -37.35 -0.50 -5.12 16 19 C -0.05 -0.42 6.18 -35.63 -0.22 -0.64 16 20 C -0.19 -1.60 10.80 -39.70 -0.43 -2.03 16 21 C -0.21 -1.60 10.91 -39.70 -0.43 -2.04 16 22 C -0.03 -0.24 12.09 29.42 0.36 0.11 16 23 O -0.17 -1.57 10.58 3.58 0.04 -1.53 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.39 2.46 8.97 45.56 0.41 2.87 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.20 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -35.46 326.59 -6.37 -41.83 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.55 Total: 1.07 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.76 Total: -12.35 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.40 Total: -35.24 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.37 Total: -17.38 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.46 -6.37 -41.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847576747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.450 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds