Wall clock time and date at job start Mon Mar 30 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47270 * 240.00305 * 3 2 1 5 5 H 1.48499 * 109.46835 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47060 * 119.99871 * 3 2 1 7 7 C 1.37887 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99468 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46876 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46740 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00051 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99840 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99921 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47283 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47269 * 305.00317 * 16 15 14 18 18 O 1.42903 * 109.46459 * 65.00211 * 16 15 14 19 19 C 1.50696 * 109.47222 * 184.99877 * 16 15 14 20 20 C 1.34514 * 125.78601 * 99.71968 * 19 16 15 21 21 C 1.41388 * 106.84128 * 179.88798 * 20 19 16 22 22 C 1.34518 * 106.83840 * 0.37014 * 21 20 19 23 23 O 1.34300 * 108.42199 * 359.77511 * 22 21 20 24 24 H 0.97000 * 119.99672 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46976 * 59.99953 * 9 7 2 26 26 H 1.09000 * 109.47292 * 300.00207 * 9 7 2 27 27 H 1.08995 * 109.46405 * 60.00098 * 10 9 7 28 28 H 1.08999 * 109.47130 * 299.99955 * 10 9 7 29 29 H 1.08992 * 109.47234 * 60.00089 * 11 10 9 30 30 H 1.08999 * 109.47254 * 299.99940 * 11 10 9 31 31 H 0.96999 * 119.99691 * 0.02562 * 14 12 11 32 32 H 1.09005 * 109.47040 * 60.00167 * 15 14 12 33 33 H 1.08999 * 109.47079 * 299.99869 * 15 14 12 34 34 H 0.96700 * 114.00311 * 60.00313 * 18 16 15 35 35 H 1.08001 * 126.58301 * 0.02766 * 20 19 16 36 36 H 1.07993 * 126.57944 * 180.16592 * 21 20 19 37 37 H 1.07994 * 125.78996 * 179.74841 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4800 -4.9872 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6517 -5.9111 -0.0032 14 7 2.0100 -7.4033 -0.0019 15 6 2.9619 -8.5168 -0.0031 16 6 2.1969 -9.8419 -0.0023 17 1 1.5056 -9.8619 0.8402 18 8 1.4643 -9.9695 -1.2227 19 6 3.1716 -10.9846 0.1202 20 6 3.4606 -11.6541 1.2506 21 6 4.4160 -12.6392 0.9103 22 6 4.6598 -12.5073 -0.4061 23 8 3.9033 -11.5036 -0.8793 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5572 0.8896 27 1 2.8724 -3.6048 0.8877 28 1 2.8711 -3.6041 -0.8923 29 1 0.8524 -5.0447 -0.8904 30 1 0.8543 -5.0450 0.8895 31 1 1.0563 -7.5805 -0.0020 32 1 3.5893 -8.4594 0.8864 33 1 3.5878 -8.4588 -0.8936 34 1 2.0169 -9.9595 -2.0161 35 1 3.0414 -11.4753 2.2297 36 1 4.8663 -13.3573 1.5794 37 1 5.3476 -13.1065 -0.9841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847576747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:04 Heat of formation + Delta-G solvation = -118.145969 kcal Electronic energy + Delta-G solvation = -19165.893778 eV Core-core repulsion = 15908.233810 eV Total energy + Delta-G solvation = -3257.659968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.57566 -40.82566 -38.60275 -36.15047 -35.39036 -34.07641 -33.98939 -32.01076 -30.07303 -28.44823 -25.85074 -24.18878 -22.77379 -22.29034 -21.69656 -21.08623 -19.08061 -18.69636 -17.98129 -17.37936 -17.12061 -16.88906 -16.51531 -16.43965 -16.14558 -15.36625 -15.05031 -14.74056 -14.22479 -14.17155 -13.79888 -13.74728 -13.65033 -13.35584 -13.02275 -12.69234 -12.58543 -12.50220 -12.41827 -11.56256 -11.54160 -11.46222 -11.27244 -10.91256 -10.79345 -10.53343 -10.17692 -9.49692 -8.19419 -6.29355 0.67336 1.39985 1.42942 1.51022 1.62386 1.64168 1.85975 2.29352 2.42918 3.13414 3.26395 3.53081 3.65971 3.93855 3.97201 4.10910 4.23300 4.25575 4.29322 4.57837 4.67439 4.83127 4.86238 4.97626 4.99215 5.11446 5.12712 5.20146 5.36401 5.54290 5.55245 5.76923 5.88054 6.09321 6.28395 6.48729 6.54498 6.86029 7.25104 7.39089 8.91892 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.055292 B = 0.002582 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.279897 B =10842.169079 C =11073.150158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.517 3.483 13 O -0.586 6.586 14 N -0.713 5.713 15 C 0.093 3.907 16 C 0.200 3.800 17 H 0.152 0.848 18 O -0.555 6.555 19 C -0.068 4.068 20 C -0.202 4.202 21 C -0.231 4.231 22 C -0.037 4.037 23 O -0.188 6.188 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.420 0.580 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 -28.101 0.490 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.305 3.695 13 O -0.465 6.465 14 N -0.366 5.366 15 C -0.032 4.032 16 C 0.140 3.860 17 H 0.169 0.831 18 O -0.362 6.362 19 C -0.119 4.119 20 C -0.221 4.221 21 C -0.250 4.250 22 C -0.104 4.104 23 O -0.085 6.085 24 H 0.073 0.927 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.511 -27.768 0.592 28.138 hybrid contribution 0.609 0.779 -0.122 0.996 sum 5.120 -26.989 0.470 27.474 Atomic orbital electron populations 1.70056 1.07487 1.27853 1.51504 1.25913 0.95844 1.03074 0.94707 0.85555 0.78388 0.78394 0.79048 1.19454 1.20355 1.19428 1.21674 0.93335 0.92857 1.50825 0.93087 1.19021 0.94210 0.92345 0.95571 1.21166 0.97638 0.93055 1.00260 1.21680 0.97877 0.91474 1.05938 1.21086 0.89366 0.84752 0.74279 1.90673 1.19123 1.85513 1.51235 1.45730 1.11243 1.04251 1.75426 1.22014 0.92442 0.85714 1.02994 1.20593 0.89439 0.85595 0.90341 0.83093 1.86576 1.37902 1.95681 1.16062 1.23193 0.99874 1.01360 0.87438 1.22014 1.01993 0.98406 0.99736 1.22233 1.02709 1.03300 0.96720 1.24859 0.97970 0.91808 0.95738 1.83968 1.45153 1.41420 1.37930 0.92651 0.98065 0.97981 0.94088 0.94186 0.87299 0.87114 0.74262 0.90884 0.91944 0.75677 0.81727 0.81360 0.74751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.15 5.46 84.66 0.46 0.62 16 3 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -32.50 9.11 25.60 0.23 -32.26 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.08 -3.66 4.44 30.59 0.14 -3.53 16 11 C -0.13 -4.16 5.70 29.85 0.17 -3.99 16 12 C 0.52 16.08 7.83 87.66 0.69 16.77 16 13 O -0.59 -23.69 15.98 -3.03 -0.05 -23.74 16 14 N -0.71 -15.13 5.50 -463.06 -2.55 -17.68 16 15 C 0.09 1.79 5.29 86.38 0.46 2.25 16 16 C 0.20 2.86 3.47 29.85 0.10 2.97 16 17 H 0.15 1.59 8.13 -2.39 -0.02 1.57 16 18 O -0.56 -8.46 13.27 -146.96 -1.95 -10.41 16 19 C -0.07 -1.12 6.18 24.83 0.15 -0.97 16 20 C -0.20 -3.06 10.80 22.19 0.24 -2.82 16 21 C -0.23 -3.07 10.91 22.19 0.24 -2.82 16 22 C -0.04 -0.46 12.09 66.97 0.81 0.35 16 23 O -0.19 -3.23 10.58 -0.49 -0.01 -3.23 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 28 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.42 6.49 8.47 -92.71 -0.79 5.70 16 32 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.39 4.55 8.97 -74.06 -0.66 3.88 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.24 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -76.71 326.59 1.23 -75.48 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -0.37 Total: 10.45 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 3.84 Total: -21.93 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -2.26 Total: -74.02 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -2.00 Total: -37.39 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.71 1.23 -75.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847576747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.671 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds