Wall clock time and date at job start Mon Mar 30 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.96085 * 2 1 4 4 C 1.33239 * 109.82920 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.52839 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46625 * 345.01279 * 5 4 3 7 7 C 1.52993 * 109.47159 * 105.01656 * 5 4 3 8 8 O 1.45203 * 109.46784 * 225.01439 * 5 4 3 9 9 C 1.34224 * 116.99625 * 149.99773 * 8 5 4 10 10 O 1.20827 * 120.00383 * 0.02562 * 9 8 5 11 11 C 1.50705 * 119.99972 * 180.02562 * 9 8 5 12 12 C 1.53004 * 109.46965 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46847 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00089 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00243 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00138 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46816 * 89.99752 * 18 16 14 20 20 H 1.48497 * 109.47191 * 209.99881 * 18 16 14 21 21 H 1.48498 * 109.46830 * 329.99847 * 18 16 14 22 22 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 23 23 N 1.34428 * 125.96156 * 180.02562 * 2 1 3 24 24 H 0.97003 * 126.82574 * 359.97438 * 23 2 1 25 25 H 1.08997 * 109.47240 * 90.00565 * 1 2 3 26 26 H 1.09010 * 109.47044 * 210.00470 * 1 2 3 27 27 H 1.09002 * 109.47122 * 330.00306 * 1 2 3 28 28 H 1.08997 * 109.47484 * 59.99753 * 7 5 4 29 29 H 1.09002 * 109.47061 * 180.02562 * 7 5 4 30 30 H 1.09007 * 109.47033 * 299.99500 * 7 5 4 31 31 H 1.09007 * 109.46844 * 299.99598 * 11 9 8 32 32 H 1.08994 * 109.47463 * 59.99717 * 11 9 8 33 33 H 1.08994 * 109.46990 * 299.99103 * 12 11 9 34 34 H 1.08999 * 109.47554 * 59.99985 * 12 11 9 35 35 H 1.08996 * 109.47427 * 300.00127 * 13 12 11 36 36 H 1.09002 * 109.47414 * 60.00104 * 13 12 11 37 37 H 0.96995 * 120.00029 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 1 4.4062 2.6276 -0.2671 7 6 5.3698 1.6471 1.3916 8 8 5.7167 1.1646 -0.9700 9 6 6.4798 2.1008 -1.5554 10 8 6.3345 3.2653 -1.2677 11 6 7.5178 1.6996 -2.5717 12 6 8.2428 2.9474 -3.0800 13 6 9.2971 2.5400 -4.1113 14 6 10.0108 3.7690 -4.6125 15 1 9.7393 4.7433 -4.2337 16 6 11.0096 3.6498 -5.5554 17 7 11.3399 2.4634 -6.0170 18 14 11.8938 5.1733 -6.1772 19 1 13.0763 5.4435 -5.3205 20 1 12.3370 4.9517 -7.5771 21 1 10.9710 6.3357 -6.1282 22 7 3.6195 -0.6168 -0.0004 23 7 2.2964 -1.0881 -0.0005 24 1 2.0094 -2.0147 -0.0006 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5140 27 1 -0.3633 0.8900 0.5138 28 1 5.7007 0.6432 1.6573 29 1 6.2245 2.3236 1.3911 30 1 4.6345 1.9917 2.1188 31 1 8.2379 1.0249 -2.1086 32 1 7.0325 1.1953 -3.4072 33 1 7.5231 3.6224 -3.5430 34 1 8.7283 3.4514 -2.2443 35 1 10.0167 1.8651 -3.6481 36 1 8.8120 2.0358 -4.9471 37 1 12.0429 2.3795 -6.6801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848865776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:20 Heat of formation + Delta-G solvation = -23.722940 kcal Electronic energy + Delta-G solvation = -19359.097913 eV Core-core repulsion = 16137.825187 eV Total energy + Delta-G solvation = -3221.272727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.51962 -40.31709 -36.79482 -34.27633 -33.89535 -32.74563 -32.11524 -31.22227 -28.33667 -28.09259 -25.06409 -23.96841 -21.94070 -21.06533 -20.30022 -19.76108 -18.30364 -17.35431 -16.61617 -16.29821 -16.06312 -15.76196 -14.61757 -14.48963 -14.22677 -14.12317 -13.47298 -13.39461 -13.25224 -12.82603 -12.35402 -12.22861 -12.15742 -11.86369 -11.50964 -11.36774 -10.83016 -10.81148 -10.65511 -10.55375 -10.42895 -10.37044 -10.17737 -9.82850 -9.70429 -9.37046 -9.06657 -8.31889 -5.97339 -3.99144 1.21218 2.22529 2.30270 2.51765 2.85158 3.35672 3.41487 3.46119 3.66716 4.17814 4.40275 4.49828 4.79162 4.83707 4.91985 5.04633 5.15473 5.28461 5.38765 5.51961 5.58798 5.66027 5.73693 5.81962 5.91853 6.04175 6.14656 6.57819 6.65695 6.68459 6.85418 7.10688 7.69780 7.72840 7.81575 8.02252 8.03419 8.45429 9.07728 9.64873 11.14154 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042725 B = 0.002847 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.198451 B = 9830.915715 C = 9969.322924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.531 5.531 4 C 0.231 3.769 5 C 0.180 3.820 6 H 0.113 0.887 7 C -0.160 4.160 8 O -0.350 6.350 9 C 0.463 3.537 10 O -0.504 6.504 11 C -0.110 4.110 12 C -0.100 4.100 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 N -0.282 5.282 23 N -0.483 5.483 24 H 0.441 0.559 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.705 -8.758 14.429 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.261 5.261 4 C -0.053 4.053 5 C 0.122 3.878 6 H 0.131 0.869 7 C -0.219 4.219 8 O -0.266 6.266 9 C 0.306 3.694 10 O -0.390 6.390 11 C -0.148 4.148 12 C -0.137 4.137 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 N -0.111 5.111 23 N -0.202 5.202 24 H 0.287 0.713 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.057 -8.495 14.405 26.890 hybrid contribution 0.077 0.089 -0.373 0.392 sum -20.980 -8.406 14.032 26.603 Atomic orbital electron populations 1.20417 0.83323 1.05100 1.04797 1.24428 0.96701 0.82665 0.95805 1.70305 1.00845 1.29704 1.25246 1.23714 0.92578 0.90000 0.98958 1.20462 0.82687 0.95234 0.89418 0.86880 1.22149 1.01999 1.03832 0.93885 1.86657 1.46327 1.40881 1.52767 1.24495 0.80674 0.84008 0.80214 1.90641 1.67068 1.19912 1.61424 1.21711 0.94620 1.02926 0.95521 1.21588 0.98432 0.93629 1.00076 1.19129 0.92590 0.97003 0.92925 1.21242 1.18217 0.93514 1.22741 0.92507 1.25023 0.97083 0.95935 0.96472 1.69964 1.30848 1.22336 1.30490 0.86578 0.79975 0.83385 0.77990 1.20656 1.21260 1.19831 1.78139 0.96103 1.12157 1.24693 1.48092 1.04413 1.10174 1.57494 0.71287 0.88781 0.89747 0.88188 0.91026 0.90352 0.90499 0.87936 0.88101 0.92381 0.92327 0.96326 0.96365 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.28 2.50 8.24 -155.70 -1.28 1.22 16 3 N -0.53 -6.76 11.19 -8.16 -0.09 -6.85 16 4 C 0.23 3.20 7.04 -156.85 -1.10 2.10 16 5 C 0.18 2.55 3.11 -27.88 -0.09 2.46 16 6 H 0.11 1.67 7.16 -51.93 -0.37 1.30 16 7 C -0.16 -1.88 9.53 37.15 0.35 -1.53 16 8 O -0.35 -5.58 9.86 -39.24 -0.39 -5.96 16 9 C 0.46 8.01 7.93 36.01 0.29 8.29 16 10 O -0.50 -9.79 15.20 -18.75 -0.29 -10.08 16 11 C -0.11 -1.91 5.81 -27.88 -0.16 -2.07 16 12 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 N -0.28 -3.73 12.79 32.42 0.41 -3.31 16 23 N -0.48 -4.26 7.45 32.62 0.24 -4.01 16 24 H 0.44 2.07 8.96 -182.33 -1.63 0.44 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 0.08 8.14 -51.92 -0.42 -0.35 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.06 1.28 8.10 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -35.66 326.58 -8.37 -44.03 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.62 Total: -4.29 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.29 Total: -5.05 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 1.30 Total: -40.59 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.67 Total: -16.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.66 -8.37 -44.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848865776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.304 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds