Wall clock time and date at job start Mon Mar 30 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.96085 * 2 1 4 4 C 1.33239 * 109.82920 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.52839 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46625 * 345.01279 * 5 4 3 7 7 C 1.52993 * 109.47159 * 105.01656 * 5 4 3 8 8 O 1.45203 * 109.46784 * 225.01439 * 5 4 3 9 9 C 1.34224 * 116.99625 * 149.99773 * 8 5 4 10 10 O 1.20827 * 120.00383 * 0.02562 * 9 8 5 11 11 C 1.50705 * 119.99972 * 180.02562 * 9 8 5 12 12 C 1.53004 * 109.46965 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46847 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00089 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00243 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00138 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46816 * 89.99752 * 18 16 14 20 20 H 1.48497 * 109.47191 * 209.99881 * 18 16 14 21 21 H 1.48498 * 109.46830 * 329.99847 * 18 16 14 22 22 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 23 23 N 1.34428 * 125.96156 * 180.02562 * 2 1 3 24 24 H 0.97003 * 126.82574 * 359.97438 * 23 2 1 25 25 H 1.08997 * 109.47240 * 90.00565 * 1 2 3 26 26 H 1.09010 * 109.47044 * 210.00470 * 1 2 3 27 27 H 1.09002 * 109.47122 * 330.00306 * 1 2 3 28 28 H 1.08997 * 109.47484 * 59.99753 * 7 5 4 29 29 H 1.09002 * 109.47061 * 180.02562 * 7 5 4 30 30 H 1.09007 * 109.47033 * 299.99500 * 7 5 4 31 31 H 1.09007 * 109.46844 * 299.99598 * 11 9 8 32 32 H 1.08994 * 109.47463 * 59.99717 * 11 9 8 33 33 H 1.08994 * 109.46990 * 299.99103 * 12 11 9 34 34 H 1.08999 * 109.47554 * 59.99985 * 12 11 9 35 35 H 1.08996 * 109.47427 * 300.00127 * 13 12 11 36 36 H 1.09002 * 109.47414 * 60.00104 * 13 12 11 37 37 H 0.96995 * 120.00029 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 1 4.4062 2.6276 -0.2671 7 6 5.3698 1.6471 1.3916 8 8 5.7167 1.1646 -0.9700 9 6 6.4798 2.1008 -1.5554 10 8 6.3345 3.2653 -1.2677 11 6 7.5178 1.6996 -2.5717 12 6 8.2428 2.9474 -3.0800 13 6 9.2971 2.5400 -4.1113 14 6 10.0108 3.7690 -4.6125 15 1 9.7393 4.7433 -4.2337 16 6 11.0096 3.6498 -5.5554 17 7 11.3399 2.4634 -6.0170 18 14 11.8938 5.1733 -6.1772 19 1 13.0763 5.4435 -5.3205 20 1 12.3370 4.9517 -7.5771 21 1 10.9710 6.3357 -6.1282 22 7 3.6195 -0.6168 -0.0004 23 7 2.2964 -1.0881 -0.0005 24 1 2.0094 -2.0147 -0.0006 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5140 27 1 -0.3633 0.8900 0.5138 28 1 5.7007 0.6432 1.6573 29 1 6.2245 2.3236 1.3911 30 1 4.6345 1.9917 2.1188 31 1 8.2379 1.0249 -2.1086 32 1 7.0325 1.1953 -3.4072 33 1 7.5231 3.6224 -3.5430 34 1 8.7283 3.4514 -2.2443 35 1 10.0167 1.8651 -3.6481 36 1 8.8120 2.0358 -4.9471 37 1 12.0429 2.3795 -6.6801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848865776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:20 Heat of formation + Delta-G solvation = -46.428723 kcal Electronic energy + Delta-G solvation = -19360.082510 eV Core-core repulsion = 16137.825187 eV Total energy + Delta-G solvation = -3222.257324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.34488 -41.65923 -38.12018 -36.17496 -34.82906 -34.07306 -33.49357 -32.17012 -29.94353 -28.92587 -26.47626 -25.50100 -23.21753 -22.16386 -21.51348 -21.22565 -19.19173 -18.66469 -18.43182 -17.60885 -17.41861 -16.78339 -16.47297 -15.75812 -15.39947 -15.21994 -14.56695 -14.38320 -14.14863 -13.82852 -13.74808 -13.66334 -13.25200 -13.17424 -12.83385 -12.67130 -12.59300 -12.47379 -12.41549 -12.02917 -11.69418 -11.58134 -11.40417 -11.27734 -11.24619 -11.15420 -10.64345 -10.53617 -8.19478 -6.29525 0.39975 1.11180 1.26706 1.41239 1.42226 1.53724 1.60025 1.82193 2.42571 2.81971 3.13953 3.42623 3.66376 3.70813 3.89488 4.04314 4.13323 4.18075 4.50986 4.59220 4.65267 4.69930 4.75850 4.89792 4.91899 5.02699 5.04012 5.07769 5.16022 5.18074 5.32193 5.53927 5.73340 5.86589 6.12534 6.26614 6.66069 6.86160 6.91824 7.39197 8.92256 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042725 B = 0.002847 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.198451 B = 9830.915715 C = 9969.322924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.293 3.707 3 N -0.567 5.567 4 C 0.215 3.785 5 C 0.175 3.825 6 H 0.102 0.898 7 C -0.152 4.152 8 O -0.349 6.349 9 C 0.472 3.528 10 O -0.529 6.529 11 C -0.104 4.104 12 C -0.085 4.085 13 C 0.025 3.975 14 C -0.546 4.546 15 H 0.055 0.945 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.267 1.267 22 N -0.311 5.311 23 N -0.470 5.470 24 H 0.459 0.541 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.004 0.996 36 H 0.002 0.998 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.078 -9.103 14.958 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.015 3.985 3 N -0.298 5.298 4 C -0.068 4.068 5 C 0.118 3.882 6 H 0.120 0.880 7 C -0.210 4.210 8 O -0.266 6.266 9 C 0.317 3.683 10 O -0.418 6.418 11 C -0.141 4.141 12 C -0.123 4.123 13 C -0.012 4.012 14 C -0.584 4.584 15 H 0.073 0.927 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.191 1.191 22 N -0.142 5.142 23 N -0.191 5.191 24 H 0.309 0.691 25 H 0.127 0.873 26 H 0.136 0.864 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.020 0.980 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.460 -8.883 14.948 28.404 hybrid contribution 0.379 0.107 -0.514 0.648 sum -22.080 -8.775 14.434 27.801 Atomic orbital electron populations 1.20710 0.79435 1.06958 1.06241 1.25341 0.98392 0.81593 0.93148 1.70292 1.00763 1.31713 1.27072 1.23595 0.92908 0.90210 1.00081 1.20626 0.82777 0.94941 0.89883 0.88048 1.22104 1.02109 1.03936 0.92879 1.86617 1.46458 1.40356 1.53127 1.24256 0.80522 0.83656 0.79901 1.90634 1.67895 1.20902 1.62339 1.21531 0.95056 1.01169 0.96336 1.21284 0.97261 0.95206 0.98565 1.19017 0.93138 0.95740 0.93347 1.21674 1.18989 0.94402 1.23310 0.92663 1.25923 0.97857 0.99250 0.96579 1.70074 1.31474 1.24496 1.31025 0.85481 0.78796 0.79382 0.77605 1.19694 1.20492 1.19135 1.78008 0.98695 1.11968 1.25541 1.48003 1.03056 1.11305 1.56728 0.69139 0.87301 0.86355 0.87837 0.90739 0.90791 0.88831 0.86087 0.86658 0.93263 0.92901 0.97768 0.97976 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.51 71.24 0.75 0.45 16 2 C 0.29 4.63 8.24 138.23 1.14 5.77 16 3 N -0.57 -14.02 11.19 -179.72 -2.01 -16.03 16 4 C 0.22 5.90 7.04 138.63 0.98 6.88 16 5 C 0.18 4.98 3.11 29.85 0.09 5.07 16 6 H 0.10 3.08 7.16 -2.39 -0.02 3.07 16 7 C -0.15 -3.51 9.53 71.98 0.69 -2.83 16 8 O -0.35 -11.09 9.86 -51.36 -0.51 -11.59 16 9 C 0.47 16.28 7.93 71.24 0.56 16.85 16 10 O -0.53 -20.73 15.20 21.96 0.33 -20.39 16 11 C -0.10 -3.55 5.81 29.85 0.17 -3.38 16 12 C -0.09 -3.69 4.44 30.60 0.14 -3.56 16 13 C 0.02 1.30 4.97 29.85 0.15 1.45 16 14 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 15 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 16 C 0.00 0.10 5.46 84.65 0.46 0.57 16 17 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 18 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 N -0.31 -8.00 12.79 -51.33 -0.66 -8.65 16 23 N -0.47 -7.45 7.45 -50.71 -0.38 -7.83 16 24 H 0.46 3.26 8.96 -213.09 -1.91 1.35 16 25 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.12 -0.29 8.14 -2.38 -0.02 -0.31 16 27 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.80 16 31 H 0.12 3.72 8.14 -2.38 -0.02 3.70 16 32 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.05 2.19 8.10 -2.39 -0.02 2.17 16 34 H 0.05 2.32 8.10 -2.39 -0.02 2.30 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -77.30 326.58 3.62 -73.68 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -0.83 Total: 4.44 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.36 Total: -4.35 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.76 Total: -88.95 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.17 Total: -31.99 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -77.30 3.62 -73.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848865776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.253 kcal (2) G-P(sol) polarization free energy of solvation -77.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds