Wall clock time and date at job start Mon Mar 30 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30991 * 1 3 3 Si 1.86799 * 119.99937 * 2 1 4 4 H 1.48507 * 109.47074 * 274.97893 * 3 2 1 5 5 H 1.48494 * 109.47338 * 34.97680 * 3 2 1 6 6 H 1.48504 * 109.47351 * 154.97880 * 3 2 1 7 7 C 1.39732 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00401 * 185.94515 * 7 2 1 9 9 C 1.41493 * 119.99928 * 5.66623 * 7 2 1 10 10 N 1.34846 * 126.02199 * 354.18250 * 9 7 2 11 11 N 1.28664 * 109.63189 * 179.81208 * 10 9 7 12 12 N 1.40120 * 108.94104 * 0.45046 * 11 10 9 13 13 C 1.46503 * 126.49460 * 179.68566 * 12 11 10 14 14 C 1.53003 * 109.47180 * 270.04158 * 13 12 11 15 15 C 1.52992 * 109.47107 * 180.02562 * 14 13 12 16 16 O 1.42907 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.35023 * 107.01453 * 359.72374 * 12 11 10 18 18 C 1.50695 * 126.77518 * 179.97438 * 17 12 11 19 19 H 1.09006 * 110.74767 * 359.29831 * 18 17 12 20 20 C 1.55310 * 110.84794 * 122.76761 * 18 17 12 21 21 C 1.55207 * 100.82486 * 152.18123 * 20 18 17 22 22 O 1.43645 * 105.25848 * 323.81740 * 21 20 18 23 23 C 1.43235 * 109.97363 * 24.28660 * 22 21 20 24 24 H 0.97002 * 119.99900 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47374 * 30.04162 * 13 12 11 26 26 H 1.08998 * 109.46722 * 150.04418 * 13 12 11 27 27 H 1.09004 * 109.47293 * 300.00151 * 14 13 12 28 28 H 1.09000 * 109.46824 * 60.00015 * 14 13 12 29 29 H 1.09000 * 109.46975 * 299.99578 * 15 14 13 30 30 H 1.09000 * 109.47515 * 60.00133 * 15 14 13 31 31 H 0.96706 * 113.99761 * 180.02562 * 16 15 14 32 32 H 1.08997 * 111.12530 * 270.24594 * 20 18 17 33 33 H 1.09004 * 111.12114 * 34.40599 * 20 18 17 34 34 H 1.09001 * 110.36958 * 204.80544 * 21 20 18 35 35 H 1.08992 * 110.21055 * 82.75669 * 21 20 18 36 36 H 1.09004 * 109.83118 * 238.77356 * 23 22 21 37 37 H 1.09005 * 109.90645 * 117.84359 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.3861 2.1072 -1.3949 5 1 1.4979 2.6200 0.8025 6 1 3.5901 1.4121 0.5922 7 6 2.0086 -1.2101 0.0005 8 1 3.0842 -1.2127 0.0974 9 6 1.3063 -2.4325 -0.1199 10 7 -0.0341 -2.5792 -0.1312 11 7 -0.3316 -3.8245 -0.2589 12 7 0.8526 -4.5702 -0.3289 13 6 0.9595 -6.0245 -0.4694 14 6 0.9929 -6.6698 0.9175 15 6 1.1052 -8.1885 0.7708 16 8 1.1359 -8.7913 2.0662 17 6 1.8766 -3.6945 -0.2414 18 6 3.3476 -4.0208 -0.2693 19 1 3.5030 -5.0959 -0.3606 20 6 4.0609 -3.2595 -1.4199 21 6 5.4962 -3.1367 -0.8423 22 8 5.3198 -2.9351 0.5690 23 6 4.0570 -3.4677 0.9853 24 1 -0.4850 0.8401 -0.0004 25 1 0.0998 -6.4001 -1.0241 26 1 1.8749 -6.2712 -1.0071 27 1 1.8527 -6.2942 1.4724 28 1 0.0775 -6.4230 1.4552 29 1 0.2456 -8.5644 0.2159 30 1 2.0208 -8.4350 0.2332 31 1 1.2067 -9.7556 2.0497 32 1 4.0531 -3.8426 -2.3408 33 1 3.6159 -2.2767 -1.5756 34 1 6.0115 -2.2842 -1.2847 35 1 6.0559 -4.0536 -1.0264 36 1 3.4530 -2.6792 1.4342 37 1 4.2123 -4.2703 1.7064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:13 Heat of formation + Delta-G solvation = -14.360570 kcal Electronic energy + Delta-G solvation = -20999.016572 eV Core-core repulsion = 17778.149828 eV Total energy + Delta-G solvation = -3220.866744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27674 -38.50865 -37.26253 -34.58752 -33.29520 -32.41044 -30.38328 -29.39066 -27.93341 -25.82347 -24.73879 -22.15670 -21.85038 -21.50869 -20.29552 -18.90690 -17.68309 -17.07202 -16.18742 -15.68132 -15.48610 -14.90748 -14.80789 -14.26420 -14.10883 -13.66321 -13.52765 -12.84344 -12.64443 -12.51113 -12.12085 -11.81059 -11.29726 -11.23547 -11.15181 -11.09400 -10.98477 -10.93588 -10.75458 -10.28463 -10.10136 -10.05904 -9.75206 -9.32619 -9.02354 -8.86456 -8.48917 -7.42694 -6.40938 -4.20566 2.70105 3.15005 3.21756 3.26433 3.45447 4.12708 4.20998 4.26657 4.40631 4.84461 5.06774 5.13479 5.20915 5.23000 5.33087 5.41573 5.48879 5.51636 5.60213 5.63628 5.75426 5.91509 6.02986 6.12097 6.18816 6.28274 6.34715 6.64842 6.71346 6.97938 7.07703 7.33473 7.46625 7.47034 7.51060 8.08148 8.41972 8.77535 9.05394 10.14705 10.55414 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.006755 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.204794 B = 4144.117326 C = 5196.880546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.450 4.450 8 H 0.090 0.910 9 C 0.161 3.839 10 N -0.228 5.228 11 N -0.126 5.126 12 N -0.377 5.377 13 C 0.143 3.857 14 C -0.137 4.137 15 C 0.081 3.919 16 O -0.573 6.573 17 C -0.115 4.115 18 C -0.010 4.010 19 H 0.067 0.933 20 C -0.152 4.152 21 C 0.053 3.947 22 O -0.386 6.386 23 C 0.055 3.945 24 H 0.272 0.728 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.378 0.622 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -11.874 -2.100 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.108 0.892 9 C 0.032 3.968 10 N -0.100 5.100 11 N -0.101 5.101 12 N -0.173 5.173 13 C 0.019 3.981 14 C -0.176 4.176 15 C 0.003 3.997 16 O -0.378 6.378 17 C -0.246 4.246 18 C -0.031 4.031 19 H 0.085 0.915 20 C -0.190 4.190 21 C -0.024 4.024 22 O -0.305 6.305 23 C -0.021 4.021 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.224 0.776 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.187 -11.063 -1.784 12.348 hybrid contribution 1.303 -0.152 -0.398 1.371 sum 6.490 -11.215 -2.182 13.140 Atomic orbital electron populations 1.70030 1.06862 1.27917 1.34986 1.25807 0.94759 1.00616 0.93376 0.86390 0.80594 0.81563 0.78746 1.19856 1.20498 1.18495 1.18711 0.94288 0.87866 1.47648 0.89236 1.18936 0.87394 0.91634 0.98866 1.75118 1.14449 1.05333 1.15112 1.81506 1.05030 0.99123 1.24472 1.49375 1.06373 1.05303 1.56244 1.21147 1.02820 0.77828 0.96344 1.21922 1.04582 0.93035 0.98045 1.22066 0.99666 0.93526 0.84477 1.86518 1.97349 1.24747 1.29182 1.20941 0.88882 0.90888 1.23846 1.20485 0.89498 0.98204 0.94961 0.91469 1.23449 0.94285 1.03711 0.97524 1.23327 0.96893 1.00151 0.82005 1.88346 1.37473 1.81691 1.23031 1.23298 0.84032 0.98841 0.95978 0.91707 0.89599 0.90243 0.90707 0.90302 0.93404 0.93553 0.77590 0.91102 0.87721 0.90264 0.93316 0.88778 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.58 11.95 55.54 0.66 -20.92 16 2 C 0.07 1.94 5.49 -17.35 -0.10 1.85 16 3 Si 0.90 19.53 29.56 -169.99 -5.03 14.50 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.45 -11.80 7.06 -37.78 -0.27 -12.07 16 8 H 0.09 2.23 5.49 -52.49 -0.29 1.94 16 9 C 0.16 4.28 6.35 -85.01 -0.54 3.74 16 10 N -0.23 -6.51 10.58 32.05 0.34 -6.17 16 11 N -0.13 -3.22 13.74 60.35 0.83 -2.40 16 12 N -0.38 -8.04 3.63 -56.17 -0.20 -8.25 16 13 C 0.14 2.18 6.18 -4.04 -0.02 2.15 16 14 C -0.14 -1.96 5.91 -26.73 -0.16 -2.12 16 15 C 0.08 0.86 7.05 37.15 0.26 1.12 16 16 O -0.57 -6.53 13.66 -35.23 -0.48 -7.01 16 17 C -0.12 -2.57 5.95 -80.90 -0.48 -3.05 16 18 C -0.01 -0.19 3.18 -89.83 -0.29 -0.47 16 19 H 0.07 1.05 6.99 -51.93 -0.36 0.69 16 20 C -0.15 -2.55 6.28 -24.34 -0.15 -2.70 16 21 C 0.05 0.80 7.78 38.33 0.30 1.10 16 22 O -0.39 -7.13 11.36 -35.23 -0.40 -7.53 16 23 C 0.06 1.03 6.67 37.88 0.25 1.29 16 24 H 0.27 7.01 8.30 -40.82 -0.34 6.67 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.08 1.02 7.20 -51.93 -0.37 0.64 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.38 2.29 9.12 45.56 0.42 2.70 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 2.06 5.98 -51.93 -0.31 1.75 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.03 5.95 -51.93 -0.31 1.72 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -32.97 306.00 -5.03 -37.99 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.17 Total: 4.31 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.19 Total: -9.15 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.63 Total: -37.73 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.88 Total: -14.54 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.97 -5.03 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.633 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds