Wall clock time and date at job start Mon Mar 30 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30991 * 1 3 3 Si 1.86799 * 119.99937 * 2 1 4 4 H 1.48507 * 109.47074 * 274.97893 * 3 2 1 5 5 H 1.48494 * 109.47338 * 34.97680 * 3 2 1 6 6 H 1.48504 * 109.47351 * 154.97880 * 3 2 1 7 7 C 1.39732 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00401 * 185.94515 * 7 2 1 9 9 C 1.41493 * 119.99928 * 5.66623 * 7 2 1 10 10 N 1.34846 * 126.02199 * 354.18250 * 9 7 2 11 11 N 1.28664 * 109.63189 * 179.81208 * 10 9 7 12 12 N 1.40120 * 108.94104 * 0.45046 * 11 10 9 13 13 C 1.46503 * 126.49460 * 179.68566 * 12 11 10 14 14 C 1.53003 * 109.47180 * 270.04158 * 13 12 11 15 15 C 1.52992 * 109.47107 * 180.02562 * 14 13 12 16 16 O 1.42907 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.35023 * 107.01453 * 359.72374 * 12 11 10 18 18 C 1.50695 * 126.77518 * 179.97438 * 17 12 11 19 19 H 1.09006 * 110.74767 * 359.29831 * 18 17 12 20 20 C 1.55310 * 110.84794 * 122.76761 * 18 17 12 21 21 C 1.55207 * 100.82486 * 152.18123 * 20 18 17 22 22 O 1.43645 * 105.25848 * 323.81740 * 21 20 18 23 23 C 1.43235 * 109.97363 * 24.28660 * 22 21 20 24 24 H 0.97002 * 119.99900 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47374 * 30.04162 * 13 12 11 26 26 H 1.08998 * 109.46722 * 150.04418 * 13 12 11 27 27 H 1.09004 * 109.47293 * 300.00151 * 14 13 12 28 28 H 1.09000 * 109.46824 * 60.00015 * 14 13 12 29 29 H 1.09000 * 109.46975 * 299.99578 * 15 14 13 30 30 H 1.09000 * 109.47515 * 60.00133 * 15 14 13 31 31 H 0.96706 * 113.99761 * 180.02562 * 16 15 14 32 32 H 1.08997 * 111.12530 * 270.24594 * 20 18 17 33 33 H 1.09004 * 111.12114 * 34.40599 * 20 18 17 34 34 H 1.09001 * 110.36958 * 204.80544 * 21 20 18 35 35 H 1.08992 * 110.21055 * 82.75669 * 21 20 18 36 36 H 1.09004 * 109.83118 * 238.77356 * 23 22 21 37 37 H 1.09005 * 109.90645 * 117.84359 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.3861 2.1072 -1.3949 5 1 1.4979 2.6200 0.8025 6 1 3.5901 1.4121 0.5922 7 6 2.0086 -1.2101 0.0005 8 1 3.0842 -1.2127 0.0974 9 6 1.3063 -2.4325 -0.1199 10 7 -0.0341 -2.5792 -0.1312 11 7 -0.3316 -3.8245 -0.2589 12 7 0.8526 -4.5702 -0.3289 13 6 0.9595 -6.0245 -0.4694 14 6 0.9929 -6.6698 0.9175 15 6 1.1052 -8.1885 0.7708 16 8 1.1359 -8.7913 2.0662 17 6 1.8766 -3.6945 -0.2414 18 6 3.3476 -4.0208 -0.2693 19 1 3.5030 -5.0959 -0.3606 20 6 4.0609 -3.2595 -1.4199 21 6 5.4962 -3.1367 -0.8423 22 8 5.3198 -2.9351 0.5690 23 6 4.0570 -3.4677 0.9853 24 1 -0.4850 0.8401 -0.0004 25 1 0.0998 -6.4001 -1.0241 26 1 1.8749 -6.2712 -1.0071 27 1 1.8527 -6.2942 1.4724 28 1 0.0775 -6.4230 1.4552 29 1 0.2456 -8.5644 0.2159 30 1 2.0208 -8.4350 0.2332 31 1 1.2067 -9.7556 2.0497 32 1 4.0531 -3.8426 -2.3408 33 1 3.6159 -2.2767 -1.5756 34 1 6.0115 -2.2842 -1.2847 35 1 6.0559 -4.0536 -1.0264 36 1 3.4530 -2.6792 1.4342 37 1 4.2123 -4.2703 1.7064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:13 Heat of formation + Delta-G solvation = -41.332137 kcal Electronic energy + Delta-G solvation = -21000.186147 eV Core-core repulsion = 17778.149828 eV Total energy + Delta-G solvation = -3222.036319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07221 -39.94579 -38.17426 -36.06392 -35.08678 -33.93172 -31.86819 -30.92755 -29.55224 -27.34446 -26.37085 -23.65821 -23.04420 -22.94561 -22.00150 -20.52737 -19.23268 -18.21318 -17.57623 -17.08263 -16.67871 -16.54909 -16.37265 -15.85372 -15.58879 -14.97119 -14.73257 -14.19710 -14.09847 -14.04914 -13.54346 -13.40300 -12.92269 -12.86276 -12.60339 -12.46883 -12.33897 -12.21015 -12.16794 -11.94383 -11.58769 -11.55214 -11.17913 -10.88808 -10.75159 -10.38083 -10.26563 -9.33016 -8.31758 -6.17978 0.92195 1.41758 1.43410 1.57114 1.92364 2.30210 2.34132 3.05466 3.31405 3.48670 3.70703 3.79168 3.86370 4.08418 4.14527 4.22729 4.27380 4.33799 4.40262 4.45894 4.48168 4.58617 4.75572 4.89407 4.93150 4.94122 5.05581 5.12175 5.18372 5.24457 5.43322 5.51374 5.63892 6.14671 6.38726 6.44788 6.88074 6.93777 7.10256 8.26573 8.67626 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.006755 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.204794 B = 4144.117326 C = 5196.880546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.023 3.977 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.466 4.466 8 H 0.095 0.905 9 C 0.118 3.882 10 N -0.285 5.285 11 N -0.168 5.168 12 N -0.360 5.360 13 C 0.129 3.871 14 C -0.130 4.130 15 C 0.088 3.912 16 O -0.599 6.599 17 C -0.077 4.077 18 C -0.013 4.013 19 H 0.108 0.892 20 C -0.149 4.149 21 C 0.053 3.947 22 O -0.403 6.403 23 C 0.061 3.939 24 H 0.272 0.728 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.401 0.599 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -14.442 -3.123 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.503 4.503 8 H 0.113 0.887 9 C -0.014 4.014 10 N -0.154 5.154 11 N -0.143 5.143 12 N -0.154 5.154 13 C 0.008 3.992 14 C -0.169 4.169 15 C 0.010 3.990 16 O -0.408 6.408 17 C -0.211 4.211 18 C -0.034 4.034 19 H 0.126 0.874 20 C -0.187 4.187 21 C -0.023 4.023 22 O -0.322 6.322 23 C -0.016 4.016 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.138 0.862 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.252 0.748 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.111 -13.713 -2.815 16.179 hybrid contribution 0.498 0.357 -0.083 0.619 sum 8.609 -13.355 -2.898 16.152 Atomic orbital electron populations 1.70187 1.08651 1.28550 1.37863 1.26696 0.95430 1.04153 0.92840 0.85305 0.79163 0.77027 0.78909 1.19066 1.20398 1.17812 1.18932 0.94485 0.88467 1.48384 0.88728 1.19469 0.87477 0.93651 1.00813 1.75066 1.15963 1.06818 1.17548 1.81380 1.06567 0.98898 1.27442 1.49885 1.05221 1.07685 1.52649 1.21738 1.05704 0.74008 0.97778 1.21802 1.02291 0.96316 0.96537 1.22001 1.02053 0.90332 0.84630 1.86448 1.97505 1.27085 1.29790 1.21658 0.91084 0.89852 1.18538 1.20753 0.86156 1.00788 0.95687 0.87384 1.23412 0.94925 1.02072 0.98284 1.23560 0.96054 1.02614 0.80035 1.88331 1.36747 1.82121 1.25040 1.23114 0.83988 0.98108 0.96397 0.91844 0.87856 0.86182 0.92076 0.93586 0.91596 0.90462 0.74834 0.88066 0.91240 0.89025 0.89618 0.92737 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.83 11.95 21.79 0.26 -48.57 16 2 C 0.02 1.25 5.49 85.18 0.47 1.72 16 3 Si 0.97 41.58 29.56 68.60 2.03 43.61 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.47 -25.44 7.06 23.43 0.17 -25.27 16 8 H 0.09 4.85 5.49 -2.91 -0.02 4.84 16 9 C 0.12 6.52 6.35 39.67 0.25 6.77 16 10 N -0.28 -17.12 10.58 -52.51 -0.56 -17.67 16 11 N -0.17 -8.94 13.74 37.02 0.51 -8.43 16 12 N -0.36 -15.12 3.63 -331.63 -1.20 -16.32 16 13 C 0.13 3.54 6.18 86.38 0.53 4.07 16 14 C -0.13 -3.45 5.91 30.59 0.18 -3.27 16 15 C 0.09 1.52 7.05 71.98 0.51 2.03 16 16 O -0.60 -11.85 13.66 -148.98 -2.04 -13.89 16 17 C -0.08 -3.37 5.95 42.25 0.25 -3.12 16 18 C -0.01 -0.43 3.18 -10.28 -0.03 -0.46 16 19 H 0.11 2.76 6.99 -2.38 -0.02 2.74 16 20 C -0.15 -4.53 6.28 32.14 0.20 -4.33 16 21 C 0.05 1.40 7.78 72.74 0.57 1.97 16 22 O -0.40 -13.78 11.36 -148.98 -1.69 -15.47 16 23 C 0.06 2.17 6.67 72.45 0.48 2.65 16 24 H 0.27 14.90 8.30 -92.71 -0.77 14.14 16 25 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.12 2.39 7.20 -2.39 -0.02 2.38 16 27 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.40 3.49 9.12 -74.05 -0.68 2.81 16 32 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.67 5.98 -2.38 -0.01 2.65 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 2.38 5.95 -2.39 -0.01 2.37 16 37 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -78.05 306.00 1.31 -76.74 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.42 Total: 17.25 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.58 Total: -17.24 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -0.99 Total: -91.00 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -3.73 Total: -29.36 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -78.05 1.31 -76.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.405 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds