Wall clock time and date at job start Mon Mar 30 2020 04:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48267 * 111.00084 * 2 1 4 4 C 1.52369 * 85.65701 * 223.43716 * 3 2 1 5 5 C 1.48265 * 111.00358 * 260.28811 * 2 1 3 6 6 C 1.53663 * 116.38342 * 141.48341 * 4 3 2 7 7 C 1.54597 * 102.73105 * 95.45479 * 6 4 3 8 8 N 1.47136 * 107.36670 * 20.76172 * 7 6 4 9 9 C 1.34774 * 125.59261 * 180.66737 * 8 7 6 10 10 O 1.21439 * 120.00494 * 180.02562 * 9 8 7 11 11 C 1.48836 * 119.99649 * 0.02562 * 9 8 7 12 12 O 1.21499 * 120.00090 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00240 * 180.02562 * 11 9 8 14 14 C 1.36113 * 120.00472 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99965 * 359.97438 * 14 13 11 16 16 C 1.39582 * 120.00103 * 180.02562 * 14 13 11 17 17 N 1.31012 * 120.00381 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47015 * 60.00192 * 18 16 14 20 20 H 1.48499 * 109.47169 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47287 * 300.00088 * 18 16 14 22 22 C 1.47729 * 108.82430 * 0.92790 * 8 7 6 23 23 H 1.09000 * 109.46713 * 60.00434 * 1 2 3 24 24 H 1.08994 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46949 * 300.00759 * 1 2 3 26 26 H 1.08997 * 113.84811 * 109.25202 * 3 2 1 27 27 H 1.09003 * 113.84105 * 337.61649 * 3 2 1 28 28 H 1.08996 * 113.84347 * 22.37225 * 5 2 1 29 29 H 1.09001 * 113.83656 * 250.74090 * 5 2 1 30 30 H 1.09001 * 110.75538 * 337.14553 * 6 4 3 31 31 H 1.08992 * 110.91912 * 213.83879 * 6 4 3 32 32 H 1.09005 * 109.86535 * 261.31796 * 7 6 4 33 33 H 1.08999 * 109.98373 * 140.27045 * 7 6 4 34 34 H 0.97003 * 119.99406 * 0.02562 * 13 11 9 35 35 H 0.96999 * 120.00249 * 180.02562 * 17 16 14 36 36 H 1.09003 * 110.39642 * 96.32740 * 22 8 7 37 37 H 1.08997 * 110.40267 * 218.73882 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0004 1.3842 0.0000 4 6 2.9890 0.8811 -1.0446 5 6 2.0005 -0.2335 -1.3643 6 6 3.3220 1.8483 -2.1913 7 6 4.6202 2.5275 -1.6980 8 7 5.2162 1.6484 -0.6798 9 6 6.3527 1.8950 0.0014 10 8 6.7542 1.0955 0.8225 11 6 7.1157 3.1474 -0.2529 12 8 6.7138 3.9475 -1.0741 13 7 8.2525 3.3939 0.4278 14 6 8.9501 4.5394 0.1957 15 1 8.5928 5.2507 -0.5342 16 6 10.1277 4.7944 0.9004 17 7 10.5620 3.9309 1.7848 18 14 11.0854 6.3662 0.5813 19 1 10.2260 7.5392 0.8825 20 1 12.2884 6.3982 1.4514 21 1 11.5028 6.4111 -0.8432 22 6 4.3681 0.4480 -0.5309 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4652 1.6778 0.9412 27 1 1.2976 2.1259 -0.3797 28 1 1.2977 0.0154 -2.1594 29 1 2.4654 -1.2107 -1.4947 30 1 2.5268 2.5825 -2.3205 31 1 3.4988 1.3051 -3.1196 32 1 4.3869 3.4976 -1.2591 33 1 5.3134 2.6543 -2.5295 34 1 8.5736 2.7548 1.0832 35 1 11.3801 4.1083 2.2748 36 1 4.7588 -0.3706 -1.1353 37 1 4.3078 0.1529 0.5167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398651147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:39 Heat of formation + Delta-G solvation = -24.137345 kcal Electronic energy + Delta-G solvation = -20496.897643 eV Core-core repulsion = 17275.606946 eV Total energy + Delta-G solvation = -3221.290697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01220 -39.22481 -37.20011 -36.18260 -34.17216 -31.64658 -31.21814 -29.49103 -27.25148 -26.48511 -25.63749 -23.88236 -21.90528 -21.62466 -18.95118 -18.78772 -18.10294 -16.57975 -16.21856 -15.86507 -15.66228 -15.16375 -14.85007 -14.78293 -13.97366 -13.91390 -13.51462 -13.35767 -13.15430 -12.66359 -12.48830 -12.22646 -11.96147 -11.76142 -11.71547 -11.43530 -11.16714 -11.07691 -10.77799 -10.54466 -10.51070 -10.39736 -10.20113 -9.68633 -8.99514 -8.29395 -8.18347 -8.16360 -6.64764 -3.97309 2.47943 3.13301 3.17891 3.18236 3.27681 3.66921 4.04790 4.18564 4.28175 4.33069 4.76691 4.84714 4.88571 4.94675 5.13380 5.20187 5.20991 5.31008 5.38181 5.53206 5.59014 5.60660 5.71594 5.86482 5.90554 5.96045 6.07189 6.09140 6.25475 6.28943 6.67493 6.79434 7.32612 7.74707 7.85178 8.31714 8.61257 8.97910 9.34363 9.87309 10.50193 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.046303 B = 0.003931 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.565076 B = 7121.521832 C = 7363.417654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.485 5.485 3 C 0.019 3.981 4 C -0.103 4.103 5 C 0.020 3.980 6 C -0.125 4.125 7 C 0.121 3.879 8 N -0.603 5.603 9 C 0.527 3.473 10 O -0.546 6.546 11 C 0.398 3.602 12 O -0.592 6.592 13 N -0.500 5.500 14 C -0.306 4.306 15 H 0.112 0.888 16 C 0.031 3.969 17 N -0.870 5.870 18 Si 0.939 3.061 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 C 0.137 3.863 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.404 0.596 35 H 0.281 0.719 36 H 0.069 0.931 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 -5.630 -5.866 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.207 5.207 3 C -0.110 4.110 4 C -0.104 4.104 5 C -0.109 4.109 6 C -0.164 4.164 7 C -0.002 4.002 8 N -0.339 5.339 9 C 0.314 3.686 10 O -0.423 6.423 11 C 0.182 3.818 12 O -0.480 6.480 13 N -0.135 5.135 14 C -0.437 4.437 15 H 0.129 0.871 16 C -0.176 4.176 17 N -0.508 5.508 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.194 1.194 22 C 0.014 3.986 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.677 -5.987 -5.219 17.575 hybrid contribution 0.249 0.852 -0.365 0.960 sum -15.429 -5.135 -5.584 17.193 Atomic orbital electron populations 1.22854 0.89782 1.02290 1.01003 1.68572 1.08885 1.18809 1.24387 1.23784 0.96088 0.91063 1.00044 1.22362 0.94857 0.96618 0.96556 1.23775 0.96274 0.99605 0.91250 1.22614 0.97976 0.98238 0.97528 1.22025 0.93058 0.93569 0.91577 1.48230 1.23717 1.21449 1.40510 1.20488 0.80033 0.87869 0.80181 1.90698 1.67925 1.49160 1.34499 1.18858 0.85628 0.88370 0.88909 1.90559 1.70092 1.49042 1.38327 1.41537 1.18641 1.19800 1.33481 1.19811 1.03945 0.97818 1.22084 0.87055 1.25577 0.97199 0.99563 0.95251 1.69477 1.22897 1.35579 1.22824 0.85786 0.78446 0.80548 0.78729 1.19408 1.20615 1.19404 1.21654 0.86693 0.87979 1.02225 0.94807 0.91222 0.91377 0.88846 0.90768 0.90660 0.88896 0.90183 0.90285 0.90491 0.90512 0.76024 0.90885 0.91255 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.64 60.07 0.58 0.50 16 2 N -0.48 -5.13 6.55 -255.21 -1.67 -6.80 16 3 C 0.02 0.20 7.30 -3.39 -0.02 0.18 16 4 C -0.10 -1.15 0.99 -154.79 -0.15 -1.30 16 5 C 0.02 0.18 7.35 -3.39 -0.02 0.16 16 6 C -0.13 -1.35 6.36 -25.55 -0.16 -1.52 16 7 C 0.12 1.89 5.51 -2.86 -0.02 1.87 16 8 N -0.60 -10.99 3.34 -171.68 -0.57 -11.57 16 9 C 0.53 11.99 7.89 -11.87 -0.09 11.90 16 10 O -0.55 -13.41 16.75 5.42 0.09 -13.32 16 11 C 0.40 10.16 7.78 -11.87 -0.09 10.06 16 12 O -0.59 -15.58 13.65 5.37 0.07 -15.50 16 13 N -0.50 -13.55 5.25 -11.59 -0.06 -13.61 16 14 C -0.31 -8.46 9.67 -15.15 -0.15 -8.61 16 15 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 16 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 17 N -0.87 -23.52 13.03 55.53 0.72 -22.79 16 18 Si 0.94 20.16 29.56 -169.99 -5.02 15.13 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 C 0.14 2.01 6.29 -3.16 -0.02 1.99 16 23 H 0.03 0.24 7.64 -51.93 -0.40 -0.15 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 1.18 8.12 -51.93 -0.42 0.75 16 27 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 28 H 0.08 0.57 7.63 -51.93 -0.40 0.17 16 29 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 30 H 0.08 0.73 7.99 -51.93 -0.41 0.32 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.31 7.59 -51.93 -0.39 0.91 16 33 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 34 H 0.40 11.10 7.35 -40.82 -0.30 10.80 16 35 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -30.85 309.67 -7.19 -38.04 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.16 Total: 9.82 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: -0.25 Total: 15.94 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -1.58 Total: -54.78 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: 0.16 Total: -28.82 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.85 -7.19 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398651147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.904 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds