Wall clock time and date at job start Mon Mar 30 2020 04:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48267 * 111.00084 * 2 1 4 4 C 1.52369 * 85.65701 * 223.43716 * 3 2 1 5 5 C 1.48265 * 111.00358 * 260.28811 * 2 1 3 6 6 C 1.53663 * 116.38342 * 141.48341 * 4 3 2 7 7 C 1.54597 * 102.73105 * 95.45479 * 6 4 3 8 8 N 1.47136 * 107.36670 * 20.76172 * 7 6 4 9 9 C 1.34774 * 125.59261 * 180.66737 * 8 7 6 10 10 O 1.21439 * 120.00494 * 180.02562 * 9 8 7 11 11 C 1.48836 * 119.99649 * 0.02562 * 9 8 7 12 12 O 1.21499 * 120.00090 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00240 * 180.02562 * 11 9 8 14 14 C 1.36113 * 120.00472 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99965 * 359.97438 * 14 13 11 16 16 C 1.39582 * 120.00103 * 180.02562 * 14 13 11 17 17 N 1.31012 * 120.00381 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47015 * 60.00192 * 18 16 14 20 20 H 1.48499 * 109.47169 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47287 * 300.00088 * 18 16 14 22 22 C 1.47729 * 108.82430 * 0.92790 * 8 7 6 23 23 H 1.09000 * 109.46713 * 60.00434 * 1 2 3 24 24 H 1.08994 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46949 * 300.00759 * 1 2 3 26 26 H 1.08997 * 113.84811 * 109.25202 * 3 2 1 27 27 H 1.09003 * 113.84105 * 337.61649 * 3 2 1 28 28 H 1.08996 * 113.84347 * 22.37225 * 5 2 1 29 29 H 1.09001 * 113.83656 * 250.74090 * 5 2 1 30 30 H 1.09001 * 110.75538 * 337.14553 * 6 4 3 31 31 H 1.08992 * 110.91912 * 213.83879 * 6 4 3 32 32 H 1.09005 * 109.86535 * 261.31796 * 7 6 4 33 33 H 1.08999 * 109.98373 * 140.27045 * 7 6 4 34 34 H 0.97003 * 119.99406 * 0.02562 * 13 11 9 35 35 H 0.96999 * 120.00249 * 180.02562 * 17 16 14 36 36 H 1.09003 * 110.39642 * 96.32740 * 22 8 7 37 37 H 1.08997 * 110.40267 * 218.73882 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0004 1.3842 0.0000 4 6 2.9890 0.8811 -1.0446 5 6 2.0005 -0.2335 -1.3643 6 6 3.3220 1.8483 -2.1913 7 6 4.6202 2.5275 -1.6980 8 7 5.2162 1.6484 -0.6798 9 6 6.3527 1.8950 0.0014 10 8 6.7542 1.0955 0.8225 11 6 7.1157 3.1474 -0.2529 12 8 6.7138 3.9475 -1.0741 13 7 8.2525 3.3939 0.4278 14 6 8.9501 4.5394 0.1957 15 1 8.5928 5.2507 -0.5342 16 6 10.1277 4.7944 0.9004 17 7 10.5620 3.9309 1.7848 18 14 11.0854 6.3662 0.5813 19 1 10.2260 7.5392 0.8825 20 1 12.2884 6.3982 1.4514 21 1 11.5028 6.4111 -0.8432 22 6 4.3681 0.4480 -0.5309 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4652 1.6778 0.9412 27 1 1.2976 2.1259 -0.3797 28 1 1.2977 0.0154 -2.1594 29 1 2.4654 -1.2107 -1.4947 30 1 2.5268 2.5825 -2.3205 31 1 3.4988 1.3051 -3.1196 32 1 4.3869 3.4976 -1.2591 33 1 5.3134 2.6543 -2.5295 34 1 8.5736 2.7548 1.0832 35 1 11.3801 4.1083 2.2748 36 1 4.7588 -0.3706 -1.1353 37 1 4.3078 0.1529 0.5167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398651147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:39 Heat of formation + Delta-G solvation = -49.109395 kcal Electronic energy + Delta-G solvation = -20497.980513 eV Core-core repulsion = 17275.606946 eV Total energy + Delta-G solvation = -3222.373566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08300 -40.89589 -39.05153 -37.62260 -36.17480 -33.51287 -32.58195 -30.55645 -28.59026 -27.47203 -27.20694 -25.27072 -23.44746 -22.62056 -20.77530 -20.08695 -19.75893 -18.20780 -17.83005 -17.35949 -16.79196 -16.53114 -16.15728 -16.05205 -15.77513 -15.22572 -15.11651 -14.61810 -14.25228 -14.08421 -13.87147 -13.66658 -13.34264 -13.04568 -12.95488 -12.75854 -12.58511 -12.33432 -12.15379 -12.12294 -11.97825 -11.65196 -11.53993 -11.38954 -10.28060 -10.16145 -9.77376 -9.71574 -8.65433 -6.10518 0.58382 1.39714 1.48732 1.52496 1.67254 2.27051 2.34876 2.87485 3.04666 3.14693 3.33326 3.45223 3.74090 3.97687 4.02252 4.17227 4.29496 4.40163 4.51074 4.59383 4.64879 4.69828 4.70316 4.87576 4.91529 4.97053 5.02006 5.07876 5.19623 5.24639 5.31616 5.37628 5.68419 6.08840 6.16444 6.32388 6.73267 6.95624 7.27572 7.79469 8.50502 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.046303 B = 0.003931 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.565076 B = 7121.521832 C = 7363.417654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.509 5.509 3 C 0.018 3.982 4 C -0.099 4.099 5 C 0.034 3.966 6 C -0.106 4.106 7 C 0.112 3.888 8 N -0.594 5.594 9 C 0.525 3.475 10 O -0.573 6.573 11 C 0.394 3.606 12 O -0.604 6.604 13 N -0.513 5.513 14 C -0.345 4.345 15 H 0.101 0.899 16 C -0.006 4.006 17 N -0.898 5.898 18 Si 1.012 2.988 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.263 1.263 22 C 0.131 3.869 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.289 0.711 36 H 0.083 0.917 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.719 -5.603 -7.358 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.231 5.231 3 C -0.111 4.111 4 C -0.100 4.100 5 C -0.094 4.094 6 C -0.144 4.144 7 C -0.010 4.010 8 N -0.327 5.327 9 C 0.310 3.690 10 O -0.453 6.453 11 C 0.178 3.822 12 O -0.493 6.493 13 N -0.148 5.148 14 C -0.474 4.474 15 H 0.118 0.882 16 C -0.210 4.210 17 N -0.536 5.536 18 Si 0.832 3.168 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.187 1.187 22 C 0.010 3.990 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.407 -5.977 -6.738 19.599 hybrid contribution 0.670 0.777 0.089 1.030 sum -16.737 -5.200 -6.649 18.745 Atomic orbital electron populations 1.22886 0.88290 1.02956 1.01731 1.68551 1.10573 1.18359 1.25651 1.23781 0.96421 0.92076 0.98776 1.22309 0.93090 0.97903 0.96702 1.23822 0.95467 0.98801 0.91351 1.22594 0.95497 0.98402 0.97866 1.22209 0.95241 0.93298 0.90220 1.48326 1.22200 1.22865 1.39329 1.19960 0.81356 0.86793 0.80854 1.90674 1.69130 1.49556 1.35937 1.19441 0.85336 0.89219 0.88157 1.90527 1.70337 1.49831 1.38563 1.41642 1.19378 1.19856 1.33874 1.19948 1.05518 0.98446 1.23506 0.88162 1.26572 0.97315 1.02897 0.94245 1.69555 1.23491 1.37307 1.23272 0.84734 0.77099 0.75995 0.78960 1.18780 1.19186 1.18749 1.21918 0.88393 0.86893 1.01798 0.93126 0.90603 0.91610 0.91499 0.88610 0.87807 0.88415 0.87423 0.87930 0.92154 0.91882 0.76688 0.90127 0.89867 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.64 127.69 1.23 1.10 16 2 N -0.51 -9.49 6.55 -961.33 -6.30 -15.79 16 3 C 0.02 0.36 7.30 85.83 0.63 0.98 16 4 C -0.10 -1.96 0.99 -52.17 -0.05 -2.01 16 5 C 0.03 0.50 7.35 85.83 0.63 1.13 16 6 C -0.11 -1.93 6.36 31.36 0.20 -1.73 16 7 C 0.11 3.45 5.51 86.80 0.48 3.93 16 8 N -0.59 -21.80 3.34 -815.40 -2.72 -24.52 16 9 C 0.52 24.70 7.89 87.08 0.69 25.38 16 10 O -0.57 -29.26 16.75 -3.52 -0.06 -29.31 16 11 C 0.39 20.89 7.78 87.08 0.68 21.57 16 12 O -0.60 -32.78 13.65 -3.71 -0.05 -32.83 16 13 N -0.51 -29.05 5.25 -308.88 -1.62 -30.67 16 14 C -0.34 -19.68 9.67 84.35 0.82 -18.86 16 15 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 16 C -0.01 -0.33 5.51 85.14 0.47 0.13 16 17 N -0.90 -49.32 13.03 21.76 0.28 -49.03 16 18 Si 1.01 41.18 29.56 68.60 2.03 43.20 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 C 0.13 3.75 6.29 86.28 0.54 4.29 16 23 H 0.05 0.52 7.64 -2.39 -0.02 0.50 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 27 H 0.10 1.48 7.83 -2.39 -0.02 1.46 16 28 H 0.10 0.99 7.63 -2.39 -0.02 0.97 16 29 H 0.10 1.37 8.12 -2.39 -0.02 1.35 16 30 H 0.11 1.48 7.99 -2.39 -0.02 1.46 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 2.06 7.59 -2.38 -0.02 2.04 16 33 H 0.06 2.12 7.66 -2.39 -0.02 2.10 16 34 H 0.40 23.02 7.35 -92.71 -0.68 22.33 16 35 H 0.29 14.52 8.30 -92.71 -0.77 13.75 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 Total: -1.00 -69.28 309.67 -1.73 -71.01 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.40 Total: 32.03 kcal Atomic # 6 Polarization: 29.60 SS G_CDS: 6.31 Total: 35.91 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -10.36 Total: -120.01 kcal Atomic # 8 Polarization: -62.03 SS G_CDS: -0.11 Total: -62.14 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -69.28 -1.73 -71.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398651147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.904 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds