Wall clock time and date at job start Mon Mar 30 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99807 * 2 1 4 4 H 1.48497 * 109.47251 * 240.00226 * 3 2 1 5 5 H 1.48503 * 109.47569 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46964 * 120.00459 * 3 2 1 7 7 C 1.37875 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47324 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47059 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00211 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99518 * 179.97438 * 12 11 10 15 15 C 1.46784 * 119.44963 * 0.02562 * 14 12 11 16 16 C 1.53508 * 107.45106 * 128.14152 * 15 14 12 17 17 C 1.51470 * 108.56245 * 58.20243 * 16 15 14 18 18 C 1.52942 * 111.62803 * 296.63183 * 17 16 15 19 19 H 1.09002 * 112.09480 * 287.90619 * 18 17 16 20 20 C 1.55122 * 107.52076 * 163.91836 * 18 17 16 21 21 O 1.43320 * 107.44732 * 266.53661 * 20 18 17 22 22 C 1.43915 * 109.97503 * 0.39511 * 21 20 18 23 23 C 1.44894 * 119.44426 * 179.97438 * 14 12 11 24 24 H 1.08997 * 109.88168 * 346.92637 * 23 14 12 25 25 H 0.96996 * 119.99887 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46461 * 60.00302 * 9 7 2 27 27 H 1.08996 * 109.47354 * 300.01205 * 9 7 2 28 28 H 1.08997 * 109.47583 * 60.00064 * 10 9 7 29 29 H 1.09003 * 109.46967 * 300.00363 * 10 9 7 30 30 H 1.09003 * 109.46791 * 59.99690 * 11 10 9 31 31 H 1.09003 * 109.46538 * 299.99849 * 11 10 9 32 32 H 1.08993 * 109.86505 * 247.62453 * 15 14 12 33 33 H 1.08997 * 109.86044 * 8.59153 * 15 14 12 34 34 H 1.08994 * 109.69399 * 178.23483 * 16 15 14 35 35 H 1.08999 * 109.69457 * 298.77852 * 16 15 14 36 36 H 1.08993 * 108.87641 * 176.03761 * 17 16 15 37 37 H 1.08992 * 108.81555 * 57.18974 * 17 16 15 38 38 H 1.08992 * 109.85733 * 26.01338 * 20 18 17 39 39 H 1.09000 * 109.85049 * 147.07320 * 20 18 17 40 40 H 1.09003 * 110.39600 * 217.52653 * 22 21 20 41 41 H 1.09001 * 110.49579 * 95.18311 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 8 3.6521 -5.9109 -0.0001 14 7 2.0104 -7.4032 -0.0004 15 6 0.5647 -7.6575 -0.0015 16 6 0.2690 -8.6284 -1.1531 17 6 1.0770 -9.8915 -0.9385 18 6 2.5803 -9.6148 -0.9918 19 1 2.9226 -9.4030 -2.0047 20 6 3.3025 -10.8377 -0.3679 21 8 3.5108 -10.5514 1.0208 22 6 2.9756 -9.2544 1.3410 23 6 2.9625 -8.4953 -0.0004 24 1 3.9587 -8.1186 -0.2323 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 2.8720 -3.6044 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8914 31 1 0.8534 -5.0451 0.8886 32 1 0.2668 -8.1056 0.9463 33 1 0.0246 -6.7234 -0.1554 34 1 -0.7943 -8.8675 -1.1681 35 1 0.5562 -8.1727 -2.1007 36 1 0.8179 -10.6119 -1.7143 37 1 0.8241 -10.3092 0.0359 38 1 2.6821 -11.7276 -0.4735 39 1 4.2618 -10.9925 -0.8618 40 1 3.6179 -8.7452 2.0595 41 1 1.9636 -9.3459 1.7356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594045191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:08 Heat of formation + Delta-G solvation = -99.576796 kcal Electronic energy + Delta-G solvation = -20781.634451 eV Core-core repulsion = 17660.612797 eV Total energy + Delta-G solvation = -3121.021654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12453 -38.99406 -36.56709 -34.27384 -33.35997 -32.20067 -31.41816 -29.15150 -27.63445 -25.78308 -24.15136 -22.85590 -22.47109 -21.01972 -19.88889 -18.57556 -17.36728 -16.68652 -16.38586 -16.00485 -15.61463 -15.41161 -14.69674 -14.46715 -14.29877 -14.25946 -13.63478 -13.44749 -12.98013 -12.93267 -12.55366 -12.23164 -11.93667 -11.78679 -11.65262 -11.39702 -11.16134 -11.02908 -10.79056 -10.68648 -10.56925 -10.54976 -9.80724 -9.68864 -9.68516 -9.28424 -9.04202 -8.69726 -8.32112 -5.98100 -3.99552 2.77385 2.83881 3.36533 3.39904 3.43825 3.68188 4.06701 4.33943 4.48658 4.49863 4.58815 4.68768 4.79512 4.88396 5.02773 5.09444 5.21768 5.28730 5.35808 5.37975 5.47331 5.54875 5.58105 5.64332 5.65775 5.67374 5.70588 5.82478 5.99083 6.20937 6.44348 6.69504 6.70304 6.91138 7.14220 7.34105 7.69668 7.82399 8.02326 8.32047 8.46345 9.07224 9.64430 11.13374 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041731 B = 0.003488 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.801248 B = 8024.676394 C = 8418.590213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.136 4.136 12 C 0.514 3.486 13 O -0.533 6.533 14 N -0.606 5.606 15 C 0.103 3.897 16 C -0.136 4.136 17 C -0.114 4.114 18 C -0.131 4.131 19 H 0.100 0.900 20 C 0.055 3.945 21 O -0.380 6.380 22 C 0.044 3.956 23 C 0.113 3.887 24 H 0.111 0.889 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 -22.797 -1.612 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.176 4.176 12 C 0.304 3.696 13 O -0.409 6.409 14 N -0.341 5.341 15 C -0.020 4.020 16 C -0.174 4.174 17 C -0.152 4.152 18 C -0.151 4.151 19 H 0.118 0.882 20 C -0.022 4.022 21 O -0.299 6.299 22 C -0.034 4.034 23 C 0.008 3.992 24 H 0.129 0.871 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.058 -22.691 -1.459 22.738 hybrid contribution 0.190 0.958 -0.187 0.994 sum 0.132 -21.733 -1.647 21.796 Atomic orbital electron populations 1.69952 1.06030 1.26663 1.51121 1.25014 0.94861 0.99238 0.95353 0.86648 0.79574 0.83044 0.78699 1.20225 1.21328 1.20219 1.21234 0.93163 0.91024 1.50300 0.92633 1.19120 0.93934 0.91426 0.97103 1.21470 0.98679 0.91508 1.01721 1.21885 0.98144 0.93949 1.03637 1.21423 0.90362 0.83507 0.74328 1.90672 1.17378 1.84180 1.48622 1.47503 1.06383 1.05292 1.74935 1.21928 0.80371 1.01018 0.98665 1.21687 1.00414 0.96003 0.99295 1.21296 0.93289 0.98046 1.02529 1.22943 0.96773 0.94899 1.00454 0.88209 1.23336 0.99908 0.96889 0.82098 1.88484 1.81249 1.34903 1.25265 1.23576 0.99440 0.83080 0.97297 1.21875 0.95493 0.87562 0.94310 0.87064 0.93008 0.96619 0.96603 0.92666 0.92709 0.89243 0.89247 0.91263 0.88328 0.90179 0.91023 0.91342 0.91547 0.90954 0.91118 0.89209 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.10 -2.05 4.44 -26.73 -0.12 -2.17 16 11 C -0.14 -2.22 4.01 -27.88 -0.11 -2.33 16 12 C 0.51 8.25 7.65 -10.99 -0.08 8.17 16 13 O -0.53 -10.61 15.30 5.56 0.08 -10.52 16 14 N -0.61 -7.40 2.74 -165.26 -0.45 -7.85 16 15 C 0.10 0.93 6.09 -3.62 -0.02 0.91 16 16 C -0.14 -1.01 6.07 -27.24 -0.17 -1.18 16 17 C -0.11 -0.83 4.61 -27.53 -0.13 -0.96 16 18 C -0.13 -1.15 3.65 -88.82 -0.32 -1.47 16 19 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 20 C 0.05 0.47 7.17 38.28 0.27 0.75 16 21 O -0.38 -4.36 11.37 -35.23 -0.40 -4.76 16 22 C 0.04 0.48 7.02 37.75 0.26 0.75 16 23 C 0.11 1.30 3.07 -67.49 -0.21 1.10 16 24 H 0.11 1.54 6.95 -51.93 -0.36 1.18 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.05 1.23 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.31 7.60 -51.93 -0.39 0.92 16 31 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 32 H 0.07 0.55 7.63 -51.93 -0.40 0.15 16 33 H 0.10 0.87 5.80 -51.93 -0.30 0.57 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.49 7.31 -51.93 -0.38 0.11 16 38 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.64 7.04 -51.93 -0.37 0.27 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -32.98 322.28 -8.14 -41.12 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.78 Total: -3.75 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.17 Total: -9.82 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.28 Total: -34.10 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.32 Total: -15.29 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.98 -8.14 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594045191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.453 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds