Wall clock time and date at job start Mon Mar 30 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99807 * 2 1 4 4 H 1.48497 * 109.47251 * 240.00226 * 3 2 1 5 5 H 1.48503 * 109.47569 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46964 * 120.00459 * 3 2 1 7 7 C 1.37875 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47324 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47059 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00211 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99518 * 179.97438 * 12 11 10 15 15 C 1.46784 * 119.44963 * 0.02562 * 14 12 11 16 16 C 1.53508 * 107.45106 * 128.14152 * 15 14 12 17 17 C 1.51470 * 108.56245 * 58.20243 * 16 15 14 18 18 C 1.52942 * 111.62803 * 296.63183 * 17 16 15 19 19 H 1.09002 * 112.09480 * 287.90619 * 18 17 16 20 20 C 1.55122 * 107.52076 * 163.91836 * 18 17 16 21 21 O 1.43320 * 107.44732 * 266.53661 * 20 18 17 22 22 C 1.43915 * 109.97503 * 0.39511 * 21 20 18 23 23 C 1.44894 * 119.44426 * 179.97438 * 14 12 11 24 24 H 1.08997 * 109.88168 * 346.92637 * 23 14 12 25 25 H 0.96996 * 119.99887 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46461 * 60.00302 * 9 7 2 27 27 H 1.08996 * 109.47354 * 300.01205 * 9 7 2 28 28 H 1.08997 * 109.47583 * 60.00064 * 10 9 7 29 29 H 1.09003 * 109.46967 * 300.00363 * 10 9 7 30 30 H 1.09003 * 109.46791 * 59.99690 * 11 10 9 31 31 H 1.09003 * 109.46538 * 299.99849 * 11 10 9 32 32 H 1.08993 * 109.86505 * 247.62453 * 15 14 12 33 33 H 1.08997 * 109.86044 * 8.59153 * 15 14 12 34 34 H 1.08994 * 109.69399 * 178.23483 * 16 15 14 35 35 H 1.08999 * 109.69457 * 298.77852 * 16 15 14 36 36 H 1.08993 * 108.87641 * 176.03761 * 17 16 15 37 37 H 1.08992 * 108.81555 * 57.18974 * 17 16 15 38 38 H 1.08992 * 109.85733 * 26.01338 * 20 18 17 39 39 H 1.09000 * 109.85049 * 147.07320 * 20 18 17 40 40 H 1.09003 * 110.39600 * 217.52653 * 22 21 20 41 41 H 1.09001 * 110.49579 * 95.18311 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 8 3.6521 -5.9109 -0.0001 14 7 2.0104 -7.4032 -0.0004 15 6 0.5647 -7.6575 -0.0015 16 6 0.2690 -8.6284 -1.1531 17 6 1.0770 -9.8915 -0.9385 18 6 2.5803 -9.6148 -0.9918 19 1 2.9226 -9.4030 -2.0047 20 6 3.3025 -10.8377 -0.3679 21 8 3.5108 -10.5514 1.0208 22 6 2.9756 -9.2544 1.3410 23 6 2.9625 -8.4953 -0.0004 24 1 3.9587 -8.1186 -0.2323 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 2.8720 -3.6044 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8914 31 1 0.8534 -5.0451 0.8886 32 1 0.2668 -8.1056 0.9463 33 1 0.0246 -6.7234 -0.1554 34 1 -0.7943 -8.8675 -1.1681 35 1 0.5562 -8.1727 -2.1007 36 1 0.8179 -10.6119 -1.7143 37 1 0.8241 -10.3092 0.0359 38 1 2.6821 -11.7276 -0.4735 39 1 4.2618 -10.9925 -0.8618 40 1 3.6179 -8.7452 2.0595 41 1 1.9636 -9.3459 1.7356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594045191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:07 Heat of formation + Delta-G solvation = -120.545281 kcal Electronic energy + Delta-G solvation = -20782.543712 eV Core-core repulsion = 17660.612797 eV Total energy + Delta-G solvation = -3121.930915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05187 -40.11579 -37.49054 -36.16885 -34.31323 -33.99270 -32.36645 -30.29786 -29.15644 -26.59758 -25.89547 -23.85227 -23.26275 -22.42260 -21.23844 -19.57024 -18.58676 -18.25656 -17.57907 -17.10154 -16.86789 -16.48054 -16.24641 -15.59662 -15.37124 -15.26724 -14.65897 -14.50317 -14.27107 -13.94040 -13.78415 -13.65643 -13.44778 -13.10438 -12.70033 -12.61899 -12.50865 -12.44010 -12.34768 -11.84692 -11.68344 -11.56891 -11.45571 -11.37998 -11.23602 -10.76621 -10.59807 -10.53812 -9.68140 -8.20215 -6.30023 1.39692 1.42312 1.50424 1.52485 1.82979 2.41646 2.87946 3.12779 3.28453 3.54535 3.75898 3.82058 3.86772 3.98950 4.11459 4.12766 4.19193 4.23601 4.42889 4.52242 4.59032 4.69930 4.72433 4.76923 4.82909 4.88989 4.94283 5.04098 5.06738 5.12282 5.15060 5.18358 5.38618 5.51539 5.55278 5.75095 5.86268 5.88996 6.23363 6.30233 6.84894 7.10782 7.38501 8.91036 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041731 B = 0.003488 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.801248 B = 8024.676394 C = 8418.590213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.083 4.083 11 C -0.126 4.126 12 C 0.513 3.487 13 O -0.583 6.583 14 N -0.594 5.594 15 C 0.091 3.909 16 C -0.131 4.131 17 C -0.111 4.111 18 C -0.124 4.124 19 H 0.102 0.898 20 C 0.052 3.948 21 O -0.398 6.398 22 C 0.049 3.951 23 C 0.106 3.894 24 H 0.080 0.920 25 H 0.265 0.735 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -24.072 -1.954 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.121 4.121 11 C -0.165 4.165 12 C 0.303 3.697 13 O -0.462 6.462 14 N -0.326 5.326 15 C -0.030 4.030 16 C -0.169 4.169 17 C -0.149 4.149 18 C -0.143 4.143 19 H 0.120 0.880 20 C -0.024 4.024 21 O -0.317 6.317 22 C -0.028 4.028 23 C 0.001 3.999 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.210 -24.015 -1.805 24.113 hybrid contribution 0.516 1.297 -0.083 1.399 sum -0.693 -22.718 -1.888 22.807 Atomic orbital electron populations 1.70052 1.07422 1.27861 1.51464 1.25878 0.95827 1.02958 0.94660 0.85578 0.78425 0.78506 0.79022 1.19479 1.20288 1.19517 1.21665 0.93310 0.92894 1.50910 0.93196 1.18999 0.94125 0.92173 0.95637 1.21179 0.97684 0.93072 1.00173 1.21707 0.97826 0.91365 1.05646 1.21286 0.89405 0.84755 0.74229 1.90657 1.19148 1.85072 1.51342 1.47468 1.08071 1.04089 1.73012 1.22290 0.77976 1.02095 1.00596 1.21687 1.01951 0.95378 0.97869 1.21311 0.91585 0.98409 1.03548 1.22935 0.98345 0.93398 0.99645 0.87969 1.23517 1.00729 0.97483 0.80709 1.88461 1.81646 1.34713 1.26904 1.23487 0.99875 0.82910 0.96557 1.21908 0.94073 0.87954 0.95973 0.90132 0.92627 0.97903 0.97931 0.94250 0.94251 0.87182 0.87222 0.89388 0.87946 0.87675 0.91870 0.89272 0.91122 0.88731 0.90692 0.90622 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.55 -32.36 9.11 25.60 0.23 -32.12 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.08 -3.65 4.44 30.59 0.14 -3.52 16 11 C -0.13 -4.04 4.01 29.85 0.12 -3.93 16 12 C 0.51 16.55 7.65 87.66 0.67 17.22 16 13 O -0.58 -24.10 15.30 -3.03 -0.05 -24.14 16 14 N -0.59 -13.91 2.74 -795.16 -2.18 -16.09 16 15 C 0.09 1.42 6.09 86.50 0.53 1.94 16 16 C -0.13 -1.51 6.07 30.26 0.18 -1.33 16 17 C -0.11 -1.23 4.61 30.07 0.14 -1.09 16 18 C -0.12 -1.94 3.65 -9.63 -0.04 -1.97 16 19 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 20 C 0.05 0.79 7.17 72.71 0.52 1.32 16 21 O -0.40 -8.65 11.37 -148.98 -1.69 -10.35 16 22 C 0.05 1.05 7.02 72.37 0.51 1.55 16 23 C 0.11 2.40 3.07 46.13 0.14 2.54 16 24 H 0.08 2.33 6.95 -2.39 -0.02 2.32 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 29 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 30 H 0.11 3.08 7.60 -2.39 -0.02 3.06 16 31 H 0.11 3.08 7.93 -2.39 -0.02 3.06 16 32 H 0.09 1.10 7.63 -2.39 -0.02 1.08 16 33 H 0.10 1.54 5.80 -2.39 -0.01 1.52 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.77 7.31 -2.39 -0.02 0.75 16 38 H 0.09 1.05 7.75 -2.39 -0.02 1.03 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 41 H 0.08 1.42 7.04 -2.39 -0.02 1.41 16 Total: -1.00 -72.55 322.28 3.14 -69.41 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.00 Total: 6.74 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 3.76 Total: -17.02 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.89 Total: -71.80 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.74 Total: -34.49 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.55 3.14 -69.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594045191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.136 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds