Wall clock time and date at job start Mon Mar 30 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99331 * 2 1 4 4 H 1.48500 * 109.46949 * 269.99619 * 3 2 1 5 5 H 1.48495 * 109.47571 * 30.00186 * 3 2 1 6 6 H 1.48501 * 109.46924 * 150.00164 * 3 2 1 7 7 C 1.37874 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00146 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47136 * 174.69272 * 9 7 2 11 11 C 1.46898 * 111.00303 * 159.11432 * 10 9 7 12 12 C 1.52995 * 109.47398 * 190.00562 * 11 10 9 13 13 H 1.09004 * 109.82762 * 305.54517 * 12 11 10 14 14 C 1.54222 * 109.83810 * 184.53553 * 12 11 10 15 15 C 1.54665 * 102.82462 * 218.30787 * 14 12 11 16 16 H 1.09006 * 114.83855 * 156.54560 * 15 14 12 17 17 C 1.54346 * 109.31413 * 286.17740 * 15 14 12 18 18 O 1.43582 * 105.43312 * 142.23170 * 17 15 14 19 19 C 1.43126 * 110.02337 * 335.77177 * 18 17 15 20 20 C 1.54389 * 107.90997 * 1.94674 * 19 18 17 21 21 H 1.08997 * 113.87041 * 143.00439 * 20 19 18 22 22 O 1.43046 * 109.84344 * 66.45344 * 12 11 10 23 23 C 1.46901 * 111.00110 * 283.07508 * 10 9 7 24 24 C 1.52994 * 117.50032 * 71.70745 * 23 10 9 25 25 C 1.53002 * 60.03358 * 107.50314 * 24 23 10 26 26 H 0.96994 * 120.00510 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47376 * 54.69986 * 9 7 2 28 28 H 1.08998 * 109.47266 * 294.69195 * 9 7 2 29 29 H 1.09007 * 109.46872 * 310.00843 * 11 10 9 30 30 H 1.08999 * 109.46576 * 69.99882 * 11 10 9 31 31 H 1.08999 * 110.73866 * 336.64396 * 14 12 11 32 32 H 1.08998 * 110.74145 * 99.97551 * 14 12 11 33 33 H 1.09002 * 110.24989 * 261.22611 * 17 15 14 34 34 H 1.09001 * 110.25656 * 23.23872 * 17 15 14 35 35 H 1.09002 * 109.77437 * 242.33107 * 19 18 17 36 36 H 1.09000 * 109.77545 * 121.55848 * 19 18 17 37 37 H 1.09000 * 115.54378 * 286.03224 * 23 10 9 38 38 H 1.09001 * 117.49607 * 215.00372 * 24 23 10 39 39 H 1.09002 * 117.50269 * 359.97438 * 24 23 10 40 40 H 1.08994 * 117.50256 * 107.49678 * 25 24 23 41 41 H 1.09000 * 117.49436 * 252.52632 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2007 -3.6127 -0.1270 11 6 1.6078 -4.8679 0.3535 12 6 2.6920 -5.9438 0.4403 13 1 3.1980 -6.0372 -0.5207 14 6 2.0593 -7.2939 0.8344 15 6 3.1144 -7.9023 1.7877 16 1 2.7266 -8.6433 2.4868 17 6 4.3263 -8.3880 0.9646 18 8 5.4788 -8.0821 1.7645 19 6 5.1802 -7.0097 2.6642 20 6 3.7003 -6.6190 2.4627 21 1 3.1877 -6.3426 3.3840 22 8 3.6385 -5.5986 1.4558 23 6 2.6700 -3.7485 -1.5124 24 6 3.6286 -2.6799 -2.0415 25 6 4.1475 -4.0849 -1.7288 26 1 -0.4850 0.8400 -0.0004 27 1 0.5555 -2.5171 -0.8384 28 1 0.6973 -2.5989 0.9340 29 1 1.1728 -4.7098 1.3404 30 1 0.8301 -5.1906 -0.3388 31 1 1.1132 -7.1399 1.3534 32 1 1.9212 -7.9262 -0.0426 33 1 4.2600 -9.4625 0.7936 34 1 4.3746 -7.8563 0.0143 35 1 5.8205 -6.1552 2.4448 36 1 5.3390 -7.3356 3.6921 37 1 1.9496 -4.1702 -2.2134 38 1 3.5389 -2.3985 -3.0907 39 1 3.9108 -1.8759 -1.3618 40 1 4.3992 -4.7277 -2.5722 41 1 4.7711 -4.2054 -0.8429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724647941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:28 Heat of formation + Delta-G solvation = -49.280113 kcal Electronic energy + Delta-G solvation = -21483.908843 eV Core-core repulsion = 18365.068218 eV Total energy + Delta-G solvation = -3118.840626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78245 -37.89253 -36.66268 -33.61257 -32.69657 -32.30051 -30.31377 -28.47987 -26.76847 -24.50041 -22.64740 -22.17902 -21.54976 -20.99997 -20.75241 -19.29342 -17.31540 -16.47339 -16.02570 -15.74420 -15.18864 -14.96705 -14.62376 -14.39992 -14.21228 -14.02285 -13.32924 -13.07047 -12.57046 -12.40581 -12.07933 -11.93313 -11.55968 -11.37705 -11.21664 -11.15096 -11.00241 -10.78414 -10.73890 -10.66481 -10.53329 -9.86225 -9.63295 -9.56632 -9.33287 -9.11187 -8.95130 -8.35202 -7.19652 -5.96201 -3.95488 3.35292 3.41453 3.46195 3.64472 3.76866 4.24061 4.45150 4.61232 4.65379 4.67490 4.79080 4.90107 5.05185 5.21900 5.23488 5.30585 5.38937 5.51744 5.67762 5.68632 5.71138 5.72648 5.77433 5.82751 5.84823 5.88006 6.09267 6.20874 6.24801 6.39688 6.49156 6.78833 6.85794 7.06661 7.21888 7.36848 7.40978 7.91634 8.17450 8.27177 8.61004 9.11485 9.67222 11.14546 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.004843 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.702783 B = 5780.231919 C = 5822.152709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.067 0.933 9 C 0.196 3.804 10 N -0.500 5.500 11 C 0.052 3.948 12 C 0.089 3.911 13 H 0.082 0.918 14 C -0.143 4.143 15 C -0.157 4.157 16 H 0.109 0.891 17 C 0.060 3.940 18 O -0.383 6.383 19 C 0.048 3.952 20 C 0.047 3.953 21 H 0.101 0.899 22 O -0.343 6.343 23 C 0.023 3.977 24 C -0.153 4.153 25 C -0.185 4.185 26 H 0.259 0.741 27 H -0.004 1.004 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 -16.571 1.674 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.531 4.531 8 H 0.085 0.915 9 C 0.071 3.929 10 N -0.224 5.224 11 C -0.077 4.077 12 C 0.032 3.968 13 H 0.100 0.900 14 C -0.181 4.181 15 C -0.176 4.176 16 H 0.128 0.872 17 C -0.017 4.017 18 O -0.302 6.302 19 C -0.029 4.029 20 C -0.011 4.011 21 H 0.119 0.881 22 O -0.262 6.262 23 C -0.086 4.086 24 C -0.190 4.190 25 C -0.223 4.223 26 H 0.069 0.931 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.836 -16.228 1.953 17.356 hybrid contribution -0.871 0.715 -0.516 1.240 sum 4.966 -15.513 1.437 16.352 Atomic orbital electron populations 1.69955 1.06032 1.26555 1.51818 1.24977 0.94816 0.99163 0.95830 0.86559 0.79881 0.83387 0.77995 1.20794 1.21410 1.19775 1.21221 0.93567 0.89599 1.48736 0.91486 1.19711 0.89755 0.87558 0.95834 1.61856 1.40656 1.03062 1.16867 1.22386 0.93913 0.91161 1.00240 1.22813 0.89929 0.92002 0.92102 0.90011 1.23007 0.98932 0.96586 0.99604 1.24279 0.96860 0.98215 0.98257 0.87243 1.23303 0.83452 1.00505 0.94420 1.88348 1.35538 1.53461 1.52867 1.23360 0.95596 0.90338 0.93595 1.24455 0.95351 0.87490 0.93820 0.88113 1.88536 1.60796 1.42856 1.34058 1.22082 0.91127 1.04416 0.90981 1.23024 1.02420 0.92924 1.00608 1.23068 0.97432 0.99601 1.02192 0.93114 0.98612 0.95908 0.90924 0.95131 0.89998 0.89886 0.89859 0.91598 0.90011 0.90678 0.91701 0.90274 0.86776 0.90489 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.49 -13.80 7.96 -34.44 -0.27 -14.07 16 8 H 0.07 1.88 5.82 -52.48 -0.31 1.57 16 9 C 0.20 5.12 4.77 -4.98 -0.02 5.10 16 10 N -0.50 -10.87 4.53 -228.04 -1.03 -11.90 16 11 C 0.05 0.93 4.47 -3.83 -0.02 0.91 16 12 C 0.09 1.32 2.65 -26.09 -0.07 1.25 16 13 H 0.08 1.24 5.84 -51.93 -0.30 0.94 16 14 C -0.14 -1.55 5.87 -25.22 -0.15 -1.70 16 15 C -0.16 -1.61 4.45 -87.22 -0.39 -2.00 16 16 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 17 C 0.06 0.65 7.01 37.86 0.27 0.92 16 18 O -0.38 -5.07 11.35 -35.23 -0.40 -5.46 16 19 C 0.05 0.58 7.44 37.89 0.28 0.86 16 20 C 0.05 0.59 4.73 -24.18 -0.11 0.47 16 21 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 22 O -0.34 -5.62 10.36 -35.23 -0.36 -5.98 16 23 C 0.02 0.46 4.23 -67.68 -0.29 0.17 16 24 C -0.15 -2.99 9.50 -26.73 -0.25 -3.24 16 25 C -0.19 -3.18 8.95 -26.69 -0.24 -3.42 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.00 -0.11 7.98 -51.93 -0.41 -0.53 16 28 H 0.02 0.63 7.71 -51.93 -0.40 0.23 16 29 H 0.07 1.34 7.82 -51.93 -0.41 0.93 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 32 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 35 H 0.08 1.07 8.05 -51.93 -0.42 0.66 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.11 2.53 5.66 -51.93 -0.29 2.23 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -31.15 321.23 -9.27 -40.42 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.67 Total: 0.84 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.36 Total: -13.36 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.30 Total: -38.14 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.76 Total: -11.45 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.15 -9.27 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724647941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.858 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds