Wall clock time and date at job start Mon Mar 30 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99331 * 2 1 4 4 H 1.48500 * 109.46949 * 269.99619 * 3 2 1 5 5 H 1.48495 * 109.47571 * 30.00186 * 3 2 1 6 6 H 1.48501 * 109.46924 * 150.00164 * 3 2 1 7 7 C 1.37874 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00146 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47136 * 174.69272 * 9 7 2 11 11 C 1.46898 * 111.00303 * 159.11432 * 10 9 7 12 12 C 1.52995 * 109.47398 * 190.00562 * 11 10 9 13 13 H 1.09004 * 109.82762 * 305.54517 * 12 11 10 14 14 C 1.54222 * 109.83810 * 184.53553 * 12 11 10 15 15 C 1.54665 * 102.82462 * 218.30787 * 14 12 11 16 16 H 1.09006 * 114.83855 * 156.54560 * 15 14 12 17 17 C 1.54346 * 109.31413 * 286.17740 * 15 14 12 18 18 O 1.43582 * 105.43312 * 142.23170 * 17 15 14 19 19 C 1.43126 * 110.02337 * 335.77177 * 18 17 15 20 20 C 1.54389 * 107.90997 * 1.94674 * 19 18 17 21 21 H 1.08997 * 113.87041 * 143.00439 * 20 19 18 22 22 O 1.43046 * 109.84344 * 66.45344 * 12 11 10 23 23 C 1.46901 * 111.00110 * 283.07508 * 10 9 7 24 24 C 1.52994 * 117.50032 * 71.70745 * 23 10 9 25 25 C 1.53002 * 60.03358 * 107.50314 * 24 23 10 26 26 H 0.96994 * 120.00510 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47376 * 54.69986 * 9 7 2 28 28 H 1.08998 * 109.47266 * 294.69195 * 9 7 2 29 29 H 1.09007 * 109.46872 * 310.00843 * 11 10 9 30 30 H 1.08999 * 109.46576 * 69.99882 * 11 10 9 31 31 H 1.08999 * 110.73866 * 336.64396 * 14 12 11 32 32 H 1.08998 * 110.74145 * 99.97551 * 14 12 11 33 33 H 1.09002 * 110.24989 * 261.22611 * 17 15 14 34 34 H 1.09001 * 110.25656 * 23.23872 * 17 15 14 35 35 H 1.09002 * 109.77437 * 242.33107 * 19 18 17 36 36 H 1.09000 * 109.77545 * 121.55848 * 19 18 17 37 37 H 1.09000 * 115.54378 * 286.03224 * 23 10 9 38 38 H 1.09001 * 117.49607 * 215.00372 * 24 23 10 39 39 H 1.09002 * 117.50269 * 359.97438 * 24 23 10 40 40 H 1.08994 * 117.50256 * 107.49678 * 25 24 23 41 41 H 1.09000 * 117.49436 * 252.52632 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2007 -3.6127 -0.1270 11 6 1.6078 -4.8679 0.3535 12 6 2.6920 -5.9438 0.4403 13 1 3.1980 -6.0372 -0.5207 14 6 2.0593 -7.2939 0.8344 15 6 3.1144 -7.9023 1.7877 16 1 2.7266 -8.6433 2.4868 17 6 4.3263 -8.3880 0.9646 18 8 5.4788 -8.0821 1.7645 19 6 5.1802 -7.0097 2.6642 20 6 3.7003 -6.6190 2.4627 21 1 3.1877 -6.3426 3.3840 22 8 3.6385 -5.5986 1.4558 23 6 2.6700 -3.7485 -1.5124 24 6 3.6286 -2.6799 -2.0415 25 6 4.1475 -4.0849 -1.7288 26 1 -0.4850 0.8400 -0.0004 27 1 0.5555 -2.5171 -0.8384 28 1 0.6973 -2.5989 0.9340 29 1 1.1728 -4.7098 1.3404 30 1 0.8301 -5.1906 -0.3388 31 1 1.1132 -7.1399 1.3534 32 1 1.9212 -7.9262 -0.0426 33 1 4.2600 -9.4625 0.7936 34 1 4.3746 -7.8563 0.0143 35 1 5.8205 -6.1552 2.4448 36 1 5.3390 -7.3356 3.6921 37 1 1.9496 -4.1702 -2.2134 38 1 3.5389 -2.3985 -3.0907 39 1 3.9108 -1.8759 -1.3618 40 1 4.3992 -4.7277 -2.5722 41 1 4.7711 -4.2054 -0.8429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724647941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:27 Heat of formation + Delta-G solvation = -70.859091 kcal Electronic energy + Delta-G solvation = -21484.844578 eV Core-core repulsion = 18365.068218 eV Total energy + Delta-G solvation = -3119.776360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77226 -39.37047 -37.82928 -35.37023 -34.43701 -33.48300 -31.59993 -29.71157 -28.39960 -25.87372 -24.14396 -23.68099 -23.02856 -22.03566 -21.85385 -20.86433 -18.63917 -18.15269 -17.14148 -16.79130 -16.69867 -16.54198 -16.02701 -15.76583 -15.46710 -15.23047 -14.97320 -14.31572 -13.95735 -13.84933 -13.53414 -13.28809 -13.06929 -12.88937 -12.63954 -12.56169 -12.40059 -12.28891 -12.17089 -11.96036 -11.69291 -11.58222 -11.27079 -11.06036 -10.74453 -10.54939 -10.49960 -10.35373 -8.94534 -8.15603 -6.23093 1.40211 1.41130 1.52636 2.41423 2.65964 2.90253 3.03994 3.15964 3.25059 3.36979 3.71748 3.78472 3.99462 4.03910 4.15582 4.18024 4.28832 4.33941 4.39588 4.43811 4.55963 4.66138 4.68760 4.74211 4.85650 4.86667 4.90050 4.90379 4.96512 5.09263 5.10881 5.18277 5.25822 5.36683 5.48489 5.76519 5.96353 6.11262 6.27666 6.45744 6.70390 6.92071 7.44758 8.94837 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.004843 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.702783 B = 5780.231919 C = 5822.152709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.511 5.511 11 C 0.050 3.950 12 C 0.094 3.906 13 H 0.079 0.921 14 C -0.135 4.135 15 C -0.140 4.140 16 H 0.139 0.861 17 C 0.054 3.946 18 O -0.401 6.401 19 C 0.049 3.951 20 C 0.034 3.966 21 H 0.110 0.890 22 O -0.378 6.378 23 C 0.005 3.995 24 C -0.169 4.169 25 C -0.145 4.145 26 H 0.262 0.738 27 H -0.034 1.034 28 H -0.005 1.005 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 -18.271 1.415 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.086 3.914 10 N -0.235 5.235 11 C -0.078 4.078 12 C 0.037 3.963 13 H 0.097 0.903 14 C -0.173 4.173 15 C -0.159 4.159 16 H 0.157 0.843 17 C -0.022 4.022 18 O -0.321 6.321 19 C -0.028 4.028 20 C -0.023 4.023 21 H 0.128 0.872 22 O -0.298 6.298 23 C -0.104 4.104 24 C -0.206 4.206 25 C -0.182 4.182 26 H 0.071 0.929 27 H -0.016 1.016 28 H 0.013 0.987 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.773 -17.952 1.694 19.262 hybrid contribution -1.147 1.208 -0.421 1.718 sum 5.626 -16.745 1.273 17.710 Atomic orbital electron populations 1.70080 1.07595 1.27562 1.52744 1.25829 0.95640 1.02815 0.95352 0.85497 0.78573 0.78880 0.78395 1.19784 1.20889 1.19254 1.21481 0.93507 0.90698 1.48406 0.91842 1.19340 0.89680 0.89243 0.93101 1.61769 1.39530 1.03620 1.18607 1.22497 0.95446 0.90547 0.99335 1.22719 0.88898 0.92658 0.92048 0.90308 1.22979 0.98989 0.94466 1.00861 1.24293 0.96117 0.97452 0.97997 0.84293 1.23469 0.83001 1.01983 0.93715 1.88328 1.36927 1.53506 1.53340 1.23375 0.94959 0.89760 0.94687 1.24710 0.96087 0.87961 0.93572 0.87235 1.88501 1.61145 1.44976 1.35138 1.22198 0.92663 1.05540 0.90016 1.22992 1.03486 0.93225 1.00896 1.23011 0.94663 0.97975 1.02586 0.92938 1.01605 0.98654 0.92339 0.94335 0.89362 0.87504 0.87245 0.92710 0.91977 0.88289 0.90959 0.88539 0.89791 0.86813 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.50 -29.01 7.96 25.60 0.20 -28.80 16 8 H 0.06 3.65 5.82 -2.91 -0.02 3.64 16 9 C 0.21 11.60 4.77 85.55 0.41 12.01 16 10 N -0.51 -22.78 4.53 -875.39 -3.97 -26.75 16 11 C 0.05 1.81 4.47 86.30 0.39 2.20 16 12 C 0.09 2.69 2.65 31.01 0.08 2.78 16 13 H 0.08 2.27 5.84 -2.39 -0.01 2.26 16 14 C -0.14 -2.57 5.87 31.58 0.19 -2.38 16 15 C -0.14 -2.43 4.45 -8.59 -0.04 -2.46 16 16 H 0.14 1.65 8.14 -2.38 -0.02 1.63 16 17 C 0.05 1.03 7.01 72.44 0.51 1.54 16 18 O -0.40 -9.84 11.35 -148.98 -1.69 -11.53 16 19 C 0.05 1.11 7.44 72.45 0.54 1.65 16 20 C 0.03 0.80 4.73 32.24 0.15 0.96 16 21 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 22 O -0.38 -12.23 10.36 -148.98 -1.54 -13.77 16 23 C 0.00 0.19 4.23 44.94 0.19 0.38 16 24 C -0.17 -6.57 9.50 30.59 0.29 -6.28 16 25 C -0.14 -4.76 8.95 30.62 0.27 -4.48 16 26 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 27 H -0.03 -2.01 7.98 -2.39 -0.02 -2.03 16 28 H 0.00 -0.27 7.71 -2.39 -0.02 -0.29 16 29 H 0.06 2.23 7.82 -2.38 -0.02 2.21 16 30 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16 31 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 32 H 0.11 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.16 6.96 -2.39 -0.02 1.14 16 35 H 0.06 1.64 8.05 -2.39 -0.02 1.62 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.08 3.80 5.66 -2.39 -0.01 3.78 16 40 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -69.36 321.23 -0.24 -69.60 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.00 Total: 14.52 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 3.64 Total: -22.40 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.68 Total: -83.88 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -3.23 Total: -25.31 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.36 -0.24 -69.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724647941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.261 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds