Wall clock time and date at job start Mon Mar 30 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47391 * 2 1 4 4 C 1.50701 * 109.47428 * 240.00298 * 2 1 3 5 5 H 1.07995 * 120.00011 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00046 * 59.99652 * 4 2 1 7 7 N 1.31519 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00111 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47214 * 60.00155 * 8 6 4 10 10 H 1.48500 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46984 * 299.99937 * 8 6 4 12 12 N 1.46902 * 109.47350 * 120.00132 * 2 1 3 13 13 C 1.46905 * 110.99838 * 287.54138 * 12 2 1 14 14 C 1.46894 * 110.99800 * 51.49461 * 12 2 1 15 15 N 1.46509 * 109.46873 * 154.82533 * 14 12 2 16 16 N 1.40022 * 126.25810 * 74.97747 * 15 14 12 17 17 N 1.23647 * 109.31899 * 179.97438 * 16 15 14 18 18 N 1.40028 * 109.31433 * 0.02562 * 17 16 15 19 19 C 1.46497 * 126.25815 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.50144 * 8.64127 * 19 18 17 21 21 C 1.52992 * 60.00246 * 252.50896 * 20 19 18 22 22 C 1.35050 * 126.26055 * 255.28763 * 15 14 12 23 23 O 1.21827 * 126.80043 * 359.97438 * 22 15 14 24 24 H 1.09001 * 109.46635 * 173.74708 * 1 2 3 25 25 H 1.08999 * 109.47069 * 293.74025 * 1 2 3 26 26 H 1.08997 * 109.47242 * 53.74849 * 1 2 3 27 27 H 0.96998 * 120.00139 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.46774 * 183.94932 * 13 12 2 29 29 H 1.08993 * 109.47009 * 303.95526 * 13 12 2 30 30 H 1.09001 * 109.47058 * 63.95429 * 13 12 2 31 31 H 1.08997 * 109.47135 * 34.82976 * 14 12 2 32 32 H 1.08997 * 109.47292 * 274.82450 * 14 12 2 33 33 H 1.09001 * 115.55122 * 154.34988 * 19 18 17 34 34 H 1.09005 * 117.49779 * 0.02562 * 20 19 18 35 35 H 1.09004 * 117.49767 * 145.01931 * 20 19 18 36 36 H 1.08996 * 117.50387 * 252.50674 * 21 20 19 37 37 H 1.09008 * 117.51382 * 107.47545 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5200 -4.0078 10 1 1.8270 -0.4197 -5.2204 11 1 3.8064 -1.1206 -4.0081 12 7 2.0197 -0.6925 1.1994 13 6 1.8055 0.1229 2.4024 14 6 1.3902 -2.0124 1.3391 15 7 2.2665 -2.8914 2.1175 16 7 2.4705 -2.8423 3.5019 17 7 3.2705 -3.7265 3.8291 18 7 3.6663 -4.4377 2.6897 19 6 4.6045 -5.5623 2.6527 20 6 5.0621 -6.1449 3.9914 21 6 6.0294 -5.3103 3.1497 22 6 3.0296 -3.8934 1.6303 23 8 3.1225 -4.2402 0.4661 24 1 -0.3632 -1.0216 -0.1119 25 1 -0.3633 0.4137 0.9407 26 1 -0.3633 0.6077 -0.8287 27 1 0.7088 1.1615 -3.4843 28 1 2.2396 -0.3818 3.2655 29 1 2.2817 1.0946 2.2722 30 1 0.7361 0.2608 2.5622 31 1 1.2276 -2.4437 0.3514 32 1 0.4339 -1.9065 1.8513 33 1 4.4769 -6.2537 1.8198 34 1 4.6647 -5.6917 4.8997 35 1 5.2355 -7.2200 4.0394 36 1 6.8392 -5.8361 2.6441 37 1 6.2688 -4.3075 3.5039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808154138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:34 Heat of formation + Delta-G solvation = 127.178234 kcal Electronic energy + Delta-G solvation = -20936.673554 eV Core-core repulsion = 17754.237145 eV Total energy + Delta-G solvation = -3182.436410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.49664 -37.84112 -37.72407 -37.08983 -33.57832 -32.40247 -31.97967 -28.92678 -26.93524 -25.33106 -24.59509 -23.79353 -22.70170 -21.86444 -21.38312 -19.51767 -17.71159 -16.94661 -16.61617 -16.09071 -15.79385 -14.97793 -14.79684 -14.23510 -14.03709 -13.71881 -13.34151 -13.20868 -12.85351 -12.67221 -12.08954 -11.92486 -11.90486 -11.74676 -11.54743 -11.15259 -10.94969 -10.87604 -10.79123 -10.59871 -10.32354 -10.19724 -9.98238 -9.73539 -9.04214 -8.83419 -8.42620 -7.50722 -6.05790 -4.09867 1.33532 1.46730 2.67672 3.13650 3.36336 3.38394 3.45514 3.50603 4.10574 4.41529 4.51857 4.63826 4.81954 4.93947 5.25674 5.26836 5.36669 5.52089 5.68711 5.75232 5.84873 5.88639 5.98920 6.07477 6.20246 6.29936 6.43730 6.61345 6.69528 6.93397 7.19354 7.51426 7.78221 7.92269 8.01863 8.08409 8.21289 8.41904 8.98108 9.56937 11.01332 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.005847 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.568996 B = 4787.657184 C = 5727.784910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.217 3.783 3 H 0.048 0.952 4 C -0.510 4.510 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.549 5.549 13 C 0.023 3.977 14 C 0.319 3.681 15 N -0.448 5.448 16 N 0.022 4.978 17 N 0.001 4.999 18 N -0.454 5.454 19 C 0.106 3.894 20 C -0.167 4.167 21 C -0.181 4.181 22 C 0.650 3.350 23 O -0.520 6.520 24 H 0.031 0.969 25 H 0.012 0.988 26 H 0.090 0.910 27 H 0.262 0.738 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -9.960 12.732 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.112 3.888 3 H 0.066 0.934 4 C -0.548 4.548 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.274 5.274 13 C -0.126 4.126 14 C 0.109 3.891 15 N -0.281 5.281 16 N 0.024 4.976 17 N 0.003 4.997 18 N -0.284 5.284 19 C 0.003 3.997 20 C -0.205 4.205 21 C -0.220 4.220 22 C 0.347 3.653 23 O -0.387 6.387 24 H 0.051 0.949 25 H 0.031 0.969 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.168 0.832 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.432 -9.787 12.703 16.637 hybrid contribution -0.417 -0.323 -1.448 1.541 sum 4.015 -10.109 11.255 15.652 Atomic orbital electron populations 1.22481 1.00107 1.00586 1.00032 1.19374 0.90046 0.94590 0.84777 0.93374 1.21119 1.31269 1.12931 0.89502 0.91577 1.24884 0.94922 0.94971 0.99032 1.69879 1.36782 1.22873 1.23740 0.86551 0.79381 0.79772 0.81738 1.20102 1.21400 1.20211 1.61848 1.58777 1.02087 1.04641 1.22419 0.98963 0.98137 0.93053 1.22223 0.85533 0.86401 0.94905 1.50897 1.42759 1.31629 1.02845 1.79442 1.09229 1.12464 0.96443 1.79477 1.08039 1.01377 1.10770 1.49568 1.42748 1.31587 1.04518 1.21641 0.88774 0.88293 1.00998 1.23366 1.02085 1.00471 0.94568 1.23509 0.92742 1.02437 1.03276 1.16945 0.81015 0.82038 0.85278 1.91163 1.67410 1.67060 1.13089 0.94942 0.96886 0.89113 0.92841 0.92323 0.91745 0.95715 0.85143 0.91665 0.83239 0.87145 0.87177 0.87169 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.15 37.16 0.30 -3.60 16 2 C 0.22 5.28 2.28 -68.86 -0.16 5.12 16 3 H 0.05 1.28 7.97 -51.93 -0.41 0.86 16 4 C -0.51 -13.91 7.67 -34.44 -0.26 -14.17 16 5 H 0.07 1.90 7.56 -52.49 -0.40 1.51 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.93 11.39 55.43 0.63 -24.30 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.55 -11.64 4.78 -240.19 -1.15 -12.79 16 13 C 0.02 0.41 9.22 60.07 0.55 0.96 16 14 C 0.32 6.26 4.75 -63.31 -0.30 5.96 16 15 N -0.45 -8.36 3.83 -68.06 -0.26 -8.62 16 16 N 0.02 0.36 12.43 60.35 0.75 1.11 16 17 N 0.00 0.02 12.98 60.35 0.78 0.80 16 18 N -0.45 -7.06 3.95 -58.48 -0.23 -7.30 16 19 C 0.11 1.22 6.84 -67.93 -0.46 0.76 16 20 C -0.17 -1.37 10.19 -26.74 -0.27 -1.64 16 21 C -0.18 -1.67 10.46 -26.73 -0.28 -1.95 16 22 C 0.65 12.60 8.76 -86.42 -0.76 11.84 16 23 O -0.52 -11.74 17.67 5.08 0.09 -11.65 16 24 H 0.03 0.70 7.00 -51.93 -0.36 0.34 16 25 H 0.01 0.25 6.65 -51.93 -0.35 -0.10 16 26 H 0.09 2.28 6.26 -51.93 -0.33 1.96 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.06 0.97 6.99 -51.93 -0.36 0.61 16 29 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 30 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 31 H 0.13 2.87 6.20 -51.93 -0.32 2.55 16 32 H 0.07 1.14 7.62 -51.93 -0.40 0.74 16 33 H 0.15 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.11 0.96 7.84 -51.93 -0.41 0.55 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.07 8.14 -51.92 -0.42 0.64 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -30.26 311.18 -6.37 -36.63 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.92 Total: -0.36 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.73 Total: 4.93 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.52 Total: -51.11 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.26 -6.37 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808154138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.812 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds