Wall clock time and date at job start Mon Mar 30 2020 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47391 * 2 1 4 4 C 1.50701 * 109.47428 * 240.00298 * 2 1 3 5 5 H 1.07995 * 120.00011 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00046 * 59.99652 * 4 2 1 7 7 N 1.31519 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00111 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47214 * 60.00155 * 8 6 4 10 10 H 1.48500 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46984 * 299.99937 * 8 6 4 12 12 N 1.46902 * 109.47350 * 120.00132 * 2 1 3 13 13 C 1.46905 * 110.99838 * 287.54138 * 12 2 1 14 14 C 1.46894 * 110.99800 * 51.49461 * 12 2 1 15 15 N 1.46509 * 109.46873 * 154.82533 * 14 12 2 16 16 N 1.40022 * 126.25810 * 74.97747 * 15 14 12 17 17 N 1.23647 * 109.31899 * 179.97438 * 16 15 14 18 18 N 1.40028 * 109.31433 * 0.02562 * 17 16 15 19 19 C 1.46497 * 126.25815 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.50144 * 8.64127 * 19 18 17 21 21 C 1.52992 * 60.00246 * 252.50896 * 20 19 18 22 22 C 1.35050 * 126.26055 * 255.28763 * 15 14 12 23 23 O 1.21827 * 126.80043 * 359.97438 * 22 15 14 24 24 H 1.09001 * 109.46635 * 173.74708 * 1 2 3 25 25 H 1.08999 * 109.47069 * 293.74025 * 1 2 3 26 26 H 1.08997 * 109.47242 * 53.74849 * 1 2 3 27 27 H 0.96998 * 120.00139 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.46774 * 183.94932 * 13 12 2 29 29 H 1.08993 * 109.47009 * 303.95526 * 13 12 2 30 30 H 1.09001 * 109.47058 * 63.95429 * 13 12 2 31 31 H 1.08997 * 109.47135 * 34.82976 * 14 12 2 32 32 H 1.08997 * 109.47292 * 274.82450 * 14 12 2 33 33 H 1.09001 * 115.55122 * 154.34988 * 19 18 17 34 34 H 1.09005 * 117.49779 * 0.02562 * 20 19 18 35 35 H 1.09004 * 117.49767 * 145.01931 * 20 19 18 36 36 H 1.08996 * 117.50387 * 252.50674 * 21 20 19 37 37 H 1.09008 * 117.51382 * 107.47545 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5200 -4.0078 10 1 1.8270 -0.4197 -5.2204 11 1 3.8064 -1.1206 -4.0081 12 7 2.0197 -0.6925 1.1994 13 6 1.8055 0.1229 2.4024 14 6 1.3902 -2.0124 1.3391 15 7 2.2665 -2.8914 2.1175 16 7 2.4705 -2.8423 3.5019 17 7 3.2705 -3.7265 3.8291 18 7 3.6663 -4.4377 2.6897 19 6 4.6045 -5.5623 2.6527 20 6 5.0621 -6.1449 3.9914 21 6 6.0294 -5.3103 3.1497 22 6 3.0296 -3.8934 1.6303 23 8 3.1225 -4.2402 0.4661 24 1 -0.3632 -1.0216 -0.1119 25 1 -0.3633 0.4137 0.9407 26 1 -0.3633 0.6077 -0.8287 27 1 0.7088 1.1615 -3.4843 28 1 2.2396 -0.3818 3.2655 29 1 2.2817 1.0946 2.2722 30 1 0.7361 0.2608 2.5622 31 1 1.2276 -2.4437 0.3514 32 1 0.4339 -1.9065 1.8513 33 1 4.4769 -6.2537 1.8198 34 1 4.6647 -5.6917 4.8997 35 1 5.2355 -7.2200 4.0394 36 1 6.8392 -5.8361 2.6441 37 1 6.2688 -4.3075 3.5039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808154138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:33 Heat of formation + Delta-G solvation = 105.985587 kcal Electronic energy + Delta-G solvation = -20937.592537 eV Core-core repulsion = 17754.237145 eV Total energy + Delta-G solvation = -3183.355392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.86541 -39.35031 -39.11934 -38.29410 -35.26475 -34.13739 -33.31066 -30.76528 -28.43142 -27.30776 -25.79109 -25.44295 -23.60170 -23.15815 -22.58332 -21.24307 -18.91168 -18.62718 -18.04029 -17.77084 -17.27010 -16.81530 -15.93517 -15.63768 -15.57345 -15.34668 -14.74444 -14.69182 -14.30715 -14.04720 -13.77155 -13.50536 -13.29947 -13.02927 -12.82202 -12.70377 -12.61537 -12.43831 -12.40083 -12.21448 -12.00329 -11.87997 -11.43224 -11.17375 -10.91778 -10.52874 -10.17374 -9.15794 -8.15844 -6.25186 -0.00103 0.15957 1.20819 1.39349 1.39640 1.49012 1.81628 2.40208 2.62877 3.01239 3.13676 3.27763 3.57768 3.82149 3.92283 4.11826 4.21424 4.37789 4.42037 4.55646 4.61498 4.73090 4.77072 4.81248 4.88297 5.00559 5.02960 5.09053 5.17603 5.20000 5.41150 5.64417 5.73411 6.06945 6.30001 6.52601 6.58069 6.72097 6.86083 7.44134 8.89671 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.005847 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.568996 B = 4787.657184 C = 5727.784910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.225 3.775 3 H 0.022 0.978 4 C -0.522 4.522 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.911 5.911 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.281 1.281 12 N -0.566 5.566 13 C 0.027 3.973 14 C 0.327 3.673 15 N -0.454 5.454 16 N 0.021 4.979 17 N 0.021 4.979 18 N -0.440 5.440 19 C 0.061 3.939 20 C -0.136 4.136 21 C -0.174 4.174 22 C 0.638 3.362 23 O -0.562 6.562 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.264 0.736 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -11.066 14.391 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.119 3.881 3 H 0.040 0.960 4 C -0.560 4.560 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.550 5.550 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.206 1.206 12 N -0.291 5.291 13 C -0.121 4.121 14 C 0.117 3.883 15 N -0.286 5.286 16 N 0.024 4.976 17 N 0.024 4.976 18 N -0.270 5.270 19 C -0.040 4.040 20 C -0.173 4.173 21 C -0.213 4.213 22 C 0.335 3.665 23 O -0.433 6.433 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.172 0.828 34 H 0.127 0.873 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.939 -10.904 14.419 18.740 hybrid contribution -0.481 -0.044 -1.836 1.898 sum 4.458 -10.948 12.583 17.264 Atomic orbital electron populations 1.22259 0.98740 1.00350 1.00416 1.19074 0.90920 0.92965 0.85185 0.95983 1.21255 1.31093 1.12394 0.91260 0.93898 1.25460 0.95224 0.95631 1.01147 1.69961 1.37276 1.23508 1.24248 0.85789 0.78533 0.78774 0.79567 1.20369 1.20087 1.20629 1.61671 1.59583 1.02959 1.04926 1.22437 1.00109 0.97711 0.91817 1.21998 0.86630 0.85402 0.94282 1.50791 1.42688 1.31336 1.03748 1.79470 1.10042 1.13200 0.94872 1.79417 1.07081 1.00711 1.10399 1.49821 1.42260 1.31694 1.03234 1.22231 0.89742 0.88197 1.03878 1.23516 0.99287 1.02167 0.92354 1.23602 0.92076 1.02463 1.03115 1.17162 0.81468 0.82404 0.85469 1.91116 1.68906 1.68357 1.14963 0.94714 0.94051 0.91687 0.92689 0.90984 0.91778 0.94154 0.88091 0.89067 0.82756 0.87317 0.83892 0.84854 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.10 8.15 71.98 0.59 -6.51 16 2 C 0.22 11.04 2.28 44.17 0.10 11.14 16 3 H 0.02 1.20 7.97 -2.38 -0.02 1.18 16 4 C -0.52 -29.16 7.67 25.60 0.20 -28.96 16 5 H 0.04 2.56 7.56 -2.91 -0.02 2.54 16 6 C 0.03 1.40 5.30 84.65 0.45 1.85 16 7 N -0.91 -51.28 11.39 21.45 0.24 -51.04 16 8 Si 0.95 45.47 29.54 68.60 2.03 47.50 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 N -0.57 -23.94 4.78 -913.84 -4.37 -28.30 16 13 C 0.03 0.92 9.22 127.69 1.18 2.10 16 14 C 0.33 12.78 4.75 170.80 0.81 13.59 16 15 N -0.45 -16.78 3.83 -487.23 -1.87 -18.65 16 16 N 0.02 0.68 12.43 37.02 0.46 1.14 16 17 N 0.02 0.61 12.98 37.02 0.48 1.09 16 18 N -0.44 -13.31 3.95 -456.93 -1.80 -15.11 16 19 C 0.06 1.31 6.84 44.99 0.31 1.61 16 20 C -0.14 -1.78 10.19 30.59 0.31 -1.46 16 21 C -0.17 -2.80 10.46 30.59 0.32 -2.48 16 22 C 0.64 24.90 8.76 178.88 1.57 26.47 16 23 O -0.56 -26.20 17.67 -4.76 -0.08 -26.28 16 24 H 0.03 1.50 7.00 -2.39 -0.02 1.48 16 25 H 0.04 1.58 6.65 -2.39 -0.02 1.56 16 26 H 0.06 3.27 6.26 -2.39 -0.01 3.26 16 27 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.07 2.25 6.99 -2.39 -0.02 2.23 16 29 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 30 H 0.04 1.24 6.69 -2.39 -0.02 1.23 16 31 H 0.10 4.57 6.20 -2.39 -0.01 4.56 16 32 H 0.09 3.05 7.62 -2.39 -0.02 3.03 16 33 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.11 1.52 7.84 -2.38 -0.02 1.51 16 35 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -66.33 311.18 1.99 -64.34 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.08 Total: 7.98 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 5.83 Total: 17.35 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -6.86 Total: -110.88 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.08 Total: -26.28 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.33 1.99 -64.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808154138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.326 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds