Wall clock time and date at job start Mon Mar 30 2020 04:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.88957 * 297.56945 * 9 7 2 11 11 C 1.55154 * 111.00567 * 61.45654 * 9 7 2 12 12 C 1.54318 * 102.94451 * 153.57243 * 11 9 7 13 13 N 1.47016 * 107.26970 * 337.80545 * 12 11 9 14 14 C 1.34780 * 125.64626 * 178.98349 * 13 12 11 15 15 O 1.21287 * 119.99725 * 179.97438 * 14 13 12 16 16 C 1.50701 * 120.00191 * 359.97438 * 14 13 12 17 17 C 1.52998 * 109.47024 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46714 * 179.97438 * 17 16 14 19 19 H 1.08998 * 110.80357 * 305.70475 * 18 17 16 20 20 C 1.54813 * 110.90289 * 182.07512 * 18 17 16 21 21 C 1.54104 * 104.18782 * 220.92055 * 20 18 17 22 22 O 1.43747 * 107.29042 * 357.97558 * 21 20 18 23 23 C 1.44413 * 107.00343 * 26.48485 * 22 21 20 24 24 C 1.47422 * 108.70804 * 358.94105 * 13 12 11 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09003 * 110.71837 * 271.93929 * 11 9 7 27 27 H 1.09002 * 110.71933 * 35.20577 * 11 9 7 28 28 H 1.08997 * 109.88186 * 97.22364 * 12 11 9 29 29 H 1.09001 * 109.88053 * 218.23131 * 12 11 9 30 30 H 1.08996 * 109.47157 * 299.99994 * 16 14 13 31 31 H 1.09000 * 109.46900 * 59.99765 * 16 14 13 32 32 H 1.08996 * 109.47614 * 300.00284 * 17 16 14 33 33 H 1.08998 * 109.46616 * 60.00766 * 17 16 14 34 34 H 1.08998 * 110.49339 * 339.60348 * 20 18 17 35 35 H 1.09001 * 110.48342 * 102.11812 * 20 18 17 36 36 H 1.09002 * 109.87293 * 117.39663 * 21 20 18 37 37 H 1.08996 * 109.88182 * 238.39875 * 21 20 18 38 38 H 1.08997 * 110.65312 * 201.48084 * 23 22 21 39 39 H 1.09006 * 110.60296 * 78.47006 * 23 22 21 40 40 H 1.08995 * 110.36562 * 265.29089 * 24 13 12 41 41 H 1.08991 * 110.37350 * 142.96407 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6482 -2.6006 0.9007 11 6 0.3740 -2.6339 -1.2745 12 6 0.2589 -4.1621 -1.4548 13 7 1.3945 -4.7718 -0.7476 14 6 1.6420 -6.0932 -0.6514 15 8 2.6137 -6.4852 -0.0405 16 6 0.7114 -7.0836 -1.3027 17 6 1.2170 -8.5044 -1.0447 18 6 0.2718 -9.5098 -1.7055 19 1 -0.7548 -9.3505 -1.3758 20 6 0.7243 -10.9628 -1.4210 21 6 0.5133 -11.6934 -2.7613 22 8 -0.0515 -10.7441 -3.6811 23 6 0.3750 -9.4334 -3.2501 24 6 2.2182 -3.6986 -0.1621 25 1 -0.4849 0.8400 0.0004 26 1 -0.6083 -2.1892 -1.1148 27 1 0.8687 -2.1803 -2.1334 28 1 -0.6784 -4.5164 -1.0259 29 1 0.3003 -4.4145 -2.5144 30 1 -0.2888 -6.9719 -0.8842 31 1 0.6786 -6.8993 -2.3765 32 1 2.2171 -8.6158 -1.4635 33 1 1.2500 -8.6888 0.0290 34 1 1.7760 -10.9859 -1.1353 35 1 0.1079 -11.4083 -0.6402 36 1 1.4692 -12.0541 -3.1412 37 1 -0.1704 -12.5310 -2.6232 38 1 -0.2909 -8.6644 -3.6417 39 1 1.4037 -9.2444 -3.5572 40 1 3.0363 -3.4390 -0.8339 41 1 2.6065 -4.0052 0.8090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401305133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:03 Heat of formation + Delta-G solvation = -102.536682 kcal Electronic energy + Delta-G solvation = -20300.169466 eV Core-core repulsion = 17179.019462 eV Total energy + Delta-G solvation = -3121.150004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.87839 -39.23549 -36.84699 -34.54503 -33.06940 -31.22059 -30.25871 -28.78006 -28.26575 -25.41319 -24.06465 -22.68120 -21.87560 -20.54132 -19.76505 -18.62658 -16.92085 -16.77757 -16.40616 -15.86993 -15.55707 -15.16123 -14.92637 -14.58665 -14.17066 -13.79026 -13.20971 -12.89549 -12.74356 -12.59699 -12.30912 -11.97140 -11.76776 -11.56180 -11.41614 -11.23408 -11.13344 -11.04408 -10.88967 -10.76979 -10.65127 -10.49923 -9.90242 -9.82965 -9.50851 -9.31452 -9.00578 -8.50649 -8.01529 -6.13651 -4.17368 3.04226 3.25366 3.32579 3.35802 3.51747 3.74230 4.28964 4.36251 4.51583 4.64106 4.83191 4.88707 5.03595 5.15710 5.19407 5.21865 5.40348 5.48027 5.53243 5.54820 5.59837 5.64657 5.72227 5.78396 5.82975 5.99931 6.06348 6.19930 6.22815 6.36348 6.59950 6.62468 6.79585 6.98903 7.09107 7.45400 7.68187 7.86207 8.12723 8.25620 8.61553 8.84277 9.47921 10.96109 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.052373 B = 0.003191 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.498479 B = 8773.821341 C = 9048.581357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.045 3.955 10 H 0.038 0.962 11 C -0.110 4.110 12 C 0.094 3.906 13 N -0.612 5.612 14 C 0.518 3.482 15 O -0.559 6.559 16 C -0.137 4.137 17 C -0.092 4.092 18 C -0.122 4.122 19 H 0.087 0.913 20 C -0.153 4.153 21 C 0.047 3.953 22 O -0.382 6.382 23 C 0.048 3.952 24 C 0.107 3.893 25 H 0.262 0.738 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -17.240 -5.151 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.026 3.974 10 H 0.056 0.944 11 C -0.148 4.148 12 C -0.029 4.029 13 N -0.344 5.344 14 C 0.307 3.693 15 O -0.439 6.439 16 C -0.177 4.177 17 C -0.130 4.130 18 C -0.141 4.141 19 H 0.105 0.895 20 C -0.191 4.191 21 C -0.030 4.030 22 O -0.301 6.301 23 C -0.028 4.028 24 C -0.014 4.014 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.034 -17.448 -5.007 18.265 hybrid contribution 0.441 1.058 0.120 1.153 sum -1.593 -16.389 -4.887 17.176 Atomic orbital electron populations 1.69939 1.05923 1.26783 1.49996 1.24952 0.94890 0.99166 0.94704 0.86550 0.79902 0.83156 0.78162 1.20613 1.21193 1.19817 1.20956 0.92999 0.89833 1.51629 0.92213 1.19835 0.92276 0.91217 0.94058 0.94417 1.22606 1.02756 0.88889 1.00547 1.22275 0.88200 0.97399 0.95004 1.48793 1.27609 1.05175 1.52867 1.20245 0.86204 0.81988 0.80867 1.90654 1.30521 1.78668 1.44051 1.21666 0.99788 0.94273 1.01980 1.21296 0.98493 0.91465 1.01733 1.22803 1.00803 0.94654 0.95833 0.89472 1.22999 1.02790 0.95221 0.98062 1.23139 0.98510 0.92763 0.88620 1.88861 1.73504 1.16195 1.51519 1.23722 1.00311 0.85607 0.93185 1.22589 0.94839 0.86925 0.97081 0.92860 0.89871 0.92127 0.92593 0.92892 0.89089 0.89302 0.90923 0.90699 0.90299 0.90436 0.92521 0.90057 0.88797 0.91891 0.92296 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.14 12.13 55.43 0.67 -23.46 16 2 C 0.07 1.72 5.34 -17.82 -0.10 1.63 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.52 -13.53 8.55 -34.44 -0.29 -13.82 16 8 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 9 C 0.05 1.07 2.96 -89.62 -0.27 0.81 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.31 5.65 -24.90 -0.14 -2.45 16 12 C 0.09 1.60 6.49 -3.07 -0.02 1.58 16 13 N -0.61 -11.50 3.33 -170.53 -0.57 -12.07 16 14 C 0.52 9.12 7.85 -10.98 -0.09 9.03 16 15 O -0.56 -11.66 16.24 5.55 0.09 -11.57 16 16 C -0.14 -1.68 4.77 -27.88 -0.13 -1.81 16 17 C -0.09 -1.02 3.90 -26.73 -0.10 -1.13 16 18 C -0.12 -1.12 3.12 -88.61 -0.28 -1.39 16 19 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 20 C -0.15 -1.25 6.60 -25.20 -0.17 -1.41 16 21 C 0.05 0.40 7.70 37.73 0.29 0.69 16 22 O -0.38 -4.26 11.52 -35.23 -0.41 -4.67 16 23 C 0.05 0.46 6.49 38.21 0.25 0.71 16 24 C 0.11 2.30 6.35 -2.53 -0.02 2.29 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.08 1.87 7.55 -51.93 -0.39 1.47 16 27 H 0.06 1.32 8.03 -51.93 -0.42 0.91 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 32 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 33 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 39 H 0.06 0.59 7.98 -51.93 -0.41 0.18 16 40 H 0.06 1.28 8.03 -51.93 -0.42 0.87 16 41 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -29.56 330.34 -8.36 -37.91 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.04 Total: -1.33 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.06 Total: -5.29 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.11 Total: -35.53 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.32 Total: -16.24 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.56 -8.36 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401305133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.626 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds