Wall clock time and date at job start Mon Mar 30 2020 04:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.88957 * 297.56945 * 9 7 2 11 11 C 1.55154 * 111.00567 * 61.45654 * 9 7 2 12 12 C 1.54318 * 102.94451 * 153.57243 * 11 9 7 13 13 N 1.47016 * 107.26970 * 337.80545 * 12 11 9 14 14 C 1.34780 * 125.64626 * 178.98349 * 13 12 11 15 15 O 1.21287 * 119.99725 * 179.97438 * 14 13 12 16 16 C 1.50701 * 120.00191 * 359.97438 * 14 13 12 17 17 C 1.52998 * 109.47024 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46714 * 179.97438 * 17 16 14 19 19 H 1.08998 * 110.80357 * 305.70475 * 18 17 16 20 20 C 1.54813 * 110.90289 * 182.07512 * 18 17 16 21 21 C 1.54104 * 104.18782 * 220.92055 * 20 18 17 22 22 O 1.43747 * 107.29042 * 357.97558 * 21 20 18 23 23 C 1.44413 * 107.00343 * 26.48485 * 22 21 20 24 24 C 1.47422 * 108.70804 * 358.94105 * 13 12 11 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09003 * 110.71837 * 271.93929 * 11 9 7 27 27 H 1.09002 * 110.71933 * 35.20577 * 11 9 7 28 28 H 1.08997 * 109.88186 * 97.22364 * 12 11 9 29 29 H 1.09001 * 109.88053 * 218.23131 * 12 11 9 30 30 H 1.08996 * 109.47157 * 299.99994 * 16 14 13 31 31 H 1.09000 * 109.46900 * 59.99765 * 16 14 13 32 32 H 1.08996 * 109.47614 * 300.00284 * 17 16 14 33 33 H 1.08998 * 109.46616 * 60.00766 * 17 16 14 34 34 H 1.08998 * 110.49339 * 339.60348 * 20 18 17 35 35 H 1.09001 * 110.48342 * 102.11812 * 20 18 17 36 36 H 1.09002 * 109.87293 * 117.39663 * 21 20 18 37 37 H 1.08996 * 109.88182 * 238.39875 * 21 20 18 38 38 H 1.08997 * 110.65312 * 201.48084 * 23 22 21 39 39 H 1.09006 * 110.60296 * 78.47006 * 23 22 21 40 40 H 1.08995 * 110.36562 * 265.29089 * 24 13 12 41 41 H 1.08991 * 110.37350 * 142.96407 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6482 -2.6006 0.9007 11 6 0.3740 -2.6339 -1.2745 12 6 0.2589 -4.1621 -1.4548 13 7 1.3945 -4.7718 -0.7476 14 6 1.6420 -6.0932 -0.6514 15 8 2.6137 -6.4852 -0.0405 16 6 0.7114 -7.0836 -1.3027 17 6 1.2170 -8.5044 -1.0447 18 6 0.2718 -9.5098 -1.7055 19 1 -0.7548 -9.3505 -1.3758 20 6 0.7243 -10.9628 -1.4210 21 6 0.5133 -11.6934 -2.7613 22 8 -0.0515 -10.7441 -3.6811 23 6 0.3750 -9.4334 -3.2501 24 6 2.2182 -3.6986 -0.1621 25 1 -0.4849 0.8400 0.0004 26 1 -0.6083 -2.1892 -1.1148 27 1 0.8687 -2.1803 -2.1334 28 1 -0.6784 -4.5164 -1.0259 29 1 0.3003 -4.4145 -2.5144 30 1 -0.2888 -6.9719 -0.8842 31 1 0.6786 -6.8993 -2.3765 32 1 2.2171 -8.6158 -1.4635 33 1 1.2500 -8.6888 0.0290 34 1 1.7760 -10.9859 -1.1353 35 1 0.1079 -11.4083 -0.6402 36 1 1.4692 -12.0541 -3.1412 37 1 -0.1704 -12.5310 -2.6232 38 1 -0.2909 -8.6644 -3.6417 39 1 1.4037 -9.2444 -3.5572 40 1 3.0363 -3.4390 -0.8339 41 1 2.6065 -4.0052 0.8090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401305133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:02 Heat of formation + Delta-G solvation = -120.102971 kcal Electronic energy + Delta-G solvation = -20300.931198 eV Core-core repulsion = 17179.019462 eV Total energy + Delta-G solvation = -3121.911735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05217 -40.25319 -38.42776 -35.46341 -34.96531 -32.46140 -31.53895 -30.11207 -29.43412 -27.04284 -25.29558 -23.81006 -22.95909 -21.62129 -21.24000 -20.03774 -18.58787 -17.96879 -17.50373 -16.98751 -16.58506 -16.48506 -16.33537 -16.04758 -15.36855 -14.85235 -14.42523 -14.27644 -14.07399 -13.84361 -13.50813 -13.36853 -13.13262 -12.95464 -12.87616 -12.60086 -12.45707 -12.30318 -12.29381 -11.93333 -11.63852 -11.57629 -11.39940 -11.33239 -10.95772 -10.78677 -10.61034 -10.51106 -9.54471 -8.16387 -6.26256 1.42728 1.44586 1.53920 1.67329 2.12831 2.44214 3.02938 3.15642 3.57209 3.60682 3.83674 3.99611 4.08368 4.14740 4.22043 4.29785 4.36879 4.43068 4.48325 4.51098 4.61970 4.67906 4.78784 4.81352 4.83587 4.89507 4.90825 5.05573 5.07062 5.10584 5.23215 5.28455 5.37349 5.41755 5.58811 5.79207 5.87433 5.94539 6.27042 6.70162 6.79710 7.19993 7.41778 8.92614 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.052373 B = 0.003191 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.498479 B = 8773.821341 C = 9048.581357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.038 3.962 10 H 0.009 0.991 11 C -0.101 4.101 12 C 0.104 3.896 13 N -0.618 5.618 14 C 0.513 3.487 15 O -0.598 6.598 16 C -0.127 4.127 17 C -0.085 4.085 18 C -0.114 4.114 19 H 0.097 0.903 20 C -0.152 4.152 21 C 0.042 3.958 22 O -0.404 6.404 23 C 0.044 3.956 24 C 0.117 3.883 25 H 0.264 0.736 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -18.192 -6.242 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.071 0.929 9 C 0.019 3.981 10 H 0.027 0.973 11 C -0.140 4.140 12 C -0.018 4.018 13 N -0.350 5.350 14 C 0.304 3.696 15 O -0.480 6.480 16 C -0.166 4.166 17 C -0.123 4.123 18 C -0.133 4.133 19 H 0.115 0.885 20 C -0.190 4.190 21 C -0.035 4.035 22 O -0.324 6.324 23 C -0.032 4.032 24 C -0.006 4.006 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.871 -18.415 -6.111 19.614 hybrid contribution 0.728 1.333 0.502 1.600 sum -2.143 -17.082 -5.609 18.106 Atomic orbital electron populations 1.70032 1.06956 1.27529 1.50457 1.25645 0.95709 1.02097 0.94389 0.85611 0.78620 0.79400 0.78350 1.19861 1.20840 1.19755 1.21256 0.92976 0.91376 1.51887 0.92923 1.19737 0.92826 0.91326 0.94197 0.97302 1.22372 1.00912 0.92242 0.98461 1.22264 0.88451 0.93953 0.97133 1.48871 1.27701 1.05308 1.53109 1.21252 0.86355 0.81872 0.80095 1.90638 1.32496 1.79109 1.45746 1.21731 0.99142 0.92769 1.02942 1.21206 0.98469 0.91476 1.01117 1.22719 1.00665 0.94478 0.95443 0.88473 1.23010 1.03014 0.94683 0.98270 1.23285 0.99067 0.92774 0.88351 1.88838 1.73948 1.17083 1.52489 1.23819 1.00562 0.85489 0.93307 1.22221 0.94579 0.87320 0.96450 0.92746 0.91450 0.93238 0.90132 0.89326 0.86815 0.86764 0.92113 0.91895 0.90409 0.89258 0.92092 0.88798 0.87625 0.92075 0.92948 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.94 12.13 21.45 0.26 -49.68 16 2 C 0.02 1.15 5.34 84.66 0.45 1.61 16 3 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.54 -28.73 8.55 25.60 0.22 -28.52 16 8 H 0.05 2.81 7.79 -2.91 -0.02 2.79 16 9 C 0.04 1.86 2.96 -10.14 -0.03 1.83 16 10 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 11 C -0.10 -4.25 5.65 31.78 0.18 -4.07 16 12 C 0.10 3.27 6.49 86.73 0.56 3.83 16 13 N -0.62 -22.42 3.33 -811.82 -2.70 -25.12 16 14 C 0.51 17.26 7.85 87.66 0.69 17.95 16 15 O -0.60 -24.82 16.24 -3.05 -0.05 -24.87 16 16 C -0.13 -2.70 4.77 29.85 0.14 -2.56 16 17 C -0.08 -1.70 3.90 30.60 0.12 -1.58 16 18 C -0.11 -1.78 3.12 -9.49 -0.03 -1.81 16 19 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 20 C -0.15 -2.14 6.60 31.59 0.21 -1.93 16 21 C 0.04 0.63 7.70 72.36 0.56 1.18 16 22 O -0.40 -8.16 11.52 -148.98 -1.72 -9.87 16 23 C 0.04 0.73 6.49 72.66 0.47 1.20 16 24 C 0.12 5.12 6.35 86.86 0.55 5.67 16 25 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 26 H 0.07 3.02 7.55 -2.39 -0.02 3.00 16 27 H 0.05 2.15 8.03 -2.39 -0.02 2.13 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.11 1.93 7.58 -2.39 -0.02 1.91 16 32 H 0.06 1.37 8.01 -2.39 -0.02 1.35 16 33 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.08 1.11 7.86 -2.39 -0.02 1.09 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.46 8.11 -2.39 -0.02 1.44 16 39 H 0.06 1.02 7.98 -2.38 -0.02 1.00 16 40 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 41 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -64.66 330.34 2.89 -61.76 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.98 Total: 10.71 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 4.09 Total: -7.20 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -2.44 Total: -74.80 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.77 Total: -34.74 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -64.66 2.89 -61.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401305133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.338 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds