Wall clock time and date at job start Mon Mar 30 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47011 * 2 1 4 4 H 1.09000 * 109.47828 * 304.97648 * 3 2 1 5 5 C 1.53104 * 109.48253 * 185.03473 * 3 2 1 6 6 C 1.53182 * 109.15717 * 182.49498 * 5 3 2 7 7 H 1.09000 * 109.54109 * 296.93702 * 6 5 3 8 8 C 1.50693 * 109.54235 * 176.75708 * 6 5 3 9 9 O 1.21276 * 120.00097 * 0.18006 * 8 6 5 10 10 N 1.34781 * 119.99837 * 180.17865 * 8 6 5 11 11 C 1.47571 * 134.49423 * 180.02562 * 10 8 6 12 12 C 1.53946 * 86.11996 * 155.35733 * 11 10 8 13 13 C 1.50701 * 113.74318 * 137.95533 * 12 11 10 14 14 H 1.08002 * 119.99761 * 1.91855 * 13 12 11 15 15 C 1.37871 * 119.99694 * 182.20418 * 13 12 11 16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 12 18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13 19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13 20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13 21 21 C 1.47807 * 134.45550 * 359.86561 * 10 8 6 22 22 C 1.53174 * 109.10606 * 56.84376 * 6 5 3 23 23 C 1.53093 * 109.16823 * 303.06421 * 22 6 5 24 24 O 1.42896 * 109.48066 * 65.00055 * 3 2 1 25 25 H 1.09000 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47272 * 299.99691 * 1 2 3 27 27 H 1.08994 * 109.47322 * 60.00454 * 1 2 3 28 28 H 1.09003 * 109.47272 * 240.00309 * 2 1 3 29 29 H 1.09006 * 109.47442 * 119.99923 * 2 1 3 30 30 H 1.09007 * 109.59644 * 62.54850 * 5 3 2 31 31 H 1.08994 * 109.45237 * 302.35574 * 5 3 2 32 32 H 1.09004 * 113.77444 * 41.05348 * 11 10 8 33 33 H 1.09000 * 113.77320 * 269.65884 * 11 10 8 34 34 H 1.09004 * 113.74086 * 269.15544 * 12 11 10 35 35 H 0.96995 * 120.00181 * 179.97438 * 16 15 13 36 36 H 1.08997 * 113.77160 * 90.37973 * 21 10 8 37 37 H 1.09008 * 113.84085 * 318.92046 * 21 10 8 38 38 H 1.09003 * 109.52236 * 62.97522 * 22 6 5 39 39 H 1.09005 * 109.52429 * 183.09256 * 22 6 5 40 40 H 1.09003 * 109.48175 * 177.58801 * 23 22 6 41 41 H 1.08993 * 109.48307 * 297.61784 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5658 1.4448 -0.1267 6 6 4.0734 2.8886 -0.0632 7 1 3.6812 3.4506 -0.9108 8 6 5.5796 2.8958 -0.1071 9 8 6.1890 1.8501 -0.1850 10 7 6.2496 4.0643 -0.0597 11 6 7.6766 4.4399 -0.0805 12 6 7.2034 5.7979 -0.6299 13 6 7.9158 6.9793 -0.0235 14 1 8.7011 6.8226 0.7012 15 6 7.5611 8.2604 -0.3895 16 7 8.1791 9.2916 0.1438 17 14 6.2028 8.5315 -1.6429 18 1 4.8972 8.6362 -0.9431 19 1 6.4645 9.7861 -2.3930 20 1 6.1669 7.3874 -2.5890 21 6 5.8492 5.4842 0.0312 22 6 3.5956 3.5311 1.2426 23 6 2.0686 3.4485 1.3143 24 8 1.6620 2.0816 1.2209 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8542 0.9987 -1.0786 31 1 3.9988 0.8701 0.6920 32 1 8.2725 3.8632 -0.7880 33 1 8.1296 4.5001 0.9091 34 1 7.1608 5.8402 -1.7183 35 1 7.9298 10.1929 -0.1139 36 1 5.7638 5.8521 1.0536 37 1 4.9888 5.7398 -0.5874 38 1 4.0293 2.9999 2.0899 39 1 3.9065 4.5755 1.2698 40 1 1.7260 3.8657 2.2612 41 1 1.6349 4.0139 0.4896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598029933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:30 Heat of formation + Delta-G solvation = -86.893841 kcal Electronic energy + Delta-G solvation = -20991.740108 eV Core-core repulsion = 17871.268429 eV Total energy + Delta-G solvation = -3120.471679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57448 -40.17918 -38.68779 -35.09065 -34.71081 -34.57553 -31.33139 -30.72975 -27.88038 -26.94901 -26.15526 -24.56026 -22.89112 -21.84321 -21.14980 -19.82646 -19.11026 -18.08189 -17.40124 -17.24829 -16.76328 -16.41310 -15.85330 -15.61242 -15.34524 -14.78769 -14.73117 -14.60399 -14.41988 -14.04106 -13.82338 -13.51688 -13.36870 -12.78906 -12.75023 -12.73365 -12.55242 -12.31614 -12.11324 -11.84024 -11.78987 -11.66323 -11.57190 -11.33423 -11.28826 -10.85483 -10.70395 -10.34180 -9.64952 -8.27032 -6.35545 1.40523 1.45108 1.53437 1.55227 1.91352 2.38698 2.83328 3.04341 3.32280 3.55715 3.72053 3.89713 4.00576 4.08638 4.14496 4.22218 4.33308 4.36887 4.42116 4.46850 4.51747 4.54170 4.68311 4.70129 4.71858 4.74871 4.81220 4.88305 4.95023 5.05563 5.09662 5.13764 5.17648 5.30517 5.38961 5.47429 5.60093 6.27513 6.29454 6.69300 6.82432 7.09796 7.31854 8.88760 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029303 B = 0.004574 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.302133 B = 6120.749267 C = 6606.716404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.073 0.927 5 C -0.123 4.123 6 C -0.099 4.099 7 H 0.113 0.887 8 C 0.527 3.473 9 O -0.595 6.595 10 N -0.638 5.638 11 C 0.115 3.885 12 C -0.017 4.017 13 C -0.516 4.516 14 H 0.038 0.962 15 C 0.020 3.980 16 N -0.946 5.946 17 Si 0.936 3.064 18 H -0.251 1.251 19 H -0.292 1.292 20 H -0.243 1.243 21 C 0.100 3.900 22 C -0.145 4.145 23 C 0.066 3.934 24 O -0.391 6.391 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.268 0.732 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.553 -12.362 -1.887 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.091 0.909 5 C -0.161 4.161 6 C -0.120 4.120 7 H 0.131 0.869 8 C 0.318 3.682 9 O -0.477 6.477 10 N -0.371 5.371 11 C -0.007 4.007 12 C -0.036 4.036 13 C -0.554 4.554 14 H 0.057 0.943 15 C -0.178 4.178 16 N -0.585 5.585 17 Si 0.759 3.241 18 H -0.175 1.175 19 H -0.219 1.219 20 H -0.167 1.167 21 C -0.022 4.022 22 C -0.183 4.183 23 C -0.010 4.010 24 O -0.310 6.310 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.436 -12.999 -1.776 21.820 hybrid contribution 0.599 0.723 -0.333 0.996 sum -16.836 -12.276 -2.109 20.943 Atomic orbital electron populations 1.21682 0.94343 1.02121 1.02092 1.21571 0.97322 0.93457 1.03053 1.22246 0.91761 0.95147 0.87293 0.90927 1.22004 0.96654 0.94215 1.03209 1.21347 0.89540 0.99740 1.01411 0.86908 1.20932 0.90849 0.81429 0.74963 1.90620 1.71407 1.32256 1.53382 1.50374 1.09650 1.06234 1.70889 1.23161 0.82900 0.94096 1.00592 1.20978 0.93221 0.92334 0.97083 1.20993 1.19581 0.90206 1.24658 0.94343 1.25873 0.98716 0.95435 0.97792 1.70049 1.43745 0.99361 1.45311 0.85882 0.80064 0.78234 0.79898 1.17488 1.21882 1.16682 1.23849 0.99931 0.76547 1.01856 1.22217 0.98632 1.01974 0.95517 1.22661 0.91533 0.82825 1.03983 1.87910 1.78369 1.25448 1.39271 0.91797 0.92913 0.92206 0.89442 0.91969 0.90453 0.92423 0.91360 0.90735 0.91619 0.92318 0.89317 0.89494 0.92189 0.89488 0.86942 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.81 71.98 0.71 -1.39 16 2 C -0.12 -1.97 5.64 30.60 0.17 -1.80 16 3 C 0.09 1.82 2.64 30.63 0.08 1.90 16 4 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.12 -3.00 4.02 30.69 0.12 -2.87 16 6 C -0.10 -2.59 2.44 -11.42 -0.03 -2.62 16 7 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 8 C 0.53 18.62 7.39 87.65 0.65 19.27 16 9 O -0.59 -25.19 16.70 -3.02 -0.05 -25.24 16 10 N -0.64 -23.07 3.57 -836.23 -2.99 -26.06 16 11 C 0.11 4.52 8.39 86.49 0.73 5.24 16 12 C -0.02 -0.70 2.90 -10.89 -0.03 -0.73 16 13 C -0.52 -26.70 9.33 25.60 0.24 -26.46 16 14 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 15 C 0.02 1.07 5.47 84.65 0.46 1.53 16 16 N -0.95 -55.09 13.96 21.45 0.30 -54.80 16 17 Si 0.94 38.76 26.95 68.60 1.85 40.61 16 18 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.24 -9.24 6.30 99.48 0.63 -8.61 16 21 C 0.10 3.48 5.65 86.43 0.49 3.97 16 22 C -0.15 -3.36 5.26 30.68 0.16 -3.20 16 23 C 0.07 1.23 6.84 72.01 0.49 1.72 16 24 O -0.39 -8.51 9.94 -148.98 -1.48 -9.99 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.86 7.82 -2.39 -0.02 0.85 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.06 1.65 8.03 -2.39 -0.02 1.63 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.07 2.99 8.09 -2.39 -0.02 2.97 16 34 H 0.07 2.72 6.71 -2.39 -0.02 2.70 16 35 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.09 3.09 7.96 -2.39 -0.02 3.07 16 37 H 0.09 2.56 7.96 -2.38 -0.02 2.54 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.97 6.29 -2.38 -0.02 1.95 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -64.60 326.22 2.78 -61.82 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.91 Total: 19.06 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 4.24 Total: -5.42 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.69 Total: -80.85 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.53 Total: -35.23 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.85 Total: 40.61 kcal Total: -64.60 2.78 -61.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598029933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.071 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds