Wall clock time and date at job start Mon Mar 30 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99930 * 2 1 4 4 O 1.20826 * 119.99630 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00174 * 179.97438 * 3 2 1 6 6 H 1.09007 * 110.36706 * 302.17802 * 5 3 2 7 7 C 1.54374 * 110.32498 * 64.35717 * 5 3 2 8 8 N 1.48558 * 104.59649 * 142.75238 * 7 5 3 9 9 C 1.46908 * 111.00317 * 200.96231 * 8 7 5 10 10 C 1.52999 * 109.46771 * 279.81141 * 9 8 7 11 11 C 1.50703 * 115.55067 * 306.40937 * 10 9 8 12 12 H 1.08000 * 119.99849 * 144.72526 * 11 10 9 13 13 C 1.37875 * 119.99788 * 324.73227 * 11 10 9 14 14 N 1.31509 * 120.00286 * 350.08455 * 13 11 10 15 15 Si 1.86799 * 119.99708 * 170.08921 * 13 11 10 16 16 H 1.48501 * 109.47301 * 59.99564 * 15 13 11 17 17 H 1.48507 * 109.47212 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47336 * 299.99192 * 15 13 11 19 19 C 1.52996 * 117.49691 * 160.74179 * 10 9 8 20 20 C 1.52998 * 117.49673 * 92.08007 * 10 9 8 21 21 C 1.48565 * 104.21934 * 320.51590 * 8 7 5 22 22 C 1.54255 * 110.32479 * 179.97438 * 5 3 2 23 23 H 1.08999 * 110.32389 * 359.97438 * 22 5 3 24 24 C 1.52999 * 110.41425 * 122.16422 * 22 5 3 25 25 H 1.08995 * 109.47723 * 300.00267 * 1 2 3 26 26 H 1.09004 * 109.47094 * 60.00555 * 1 2 3 27 27 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.09003 * 110.41115 * 23.97231 * 7 5 3 29 29 H 1.09002 * 110.41241 * 261.52942 * 7 5 3 30 30 H 1.09002 * 109.46813 * 39.80853 * 9 8 7 31 31 H 1.09000 * 109.46923 * 159.80939 * 9 8 7 32 32 H 0.96997 * 120.00100 * 185.02136 * 14 13 11 33 33 H 1.09001 * 117.50247 * 359.97438 * 19 10 9 34 34 H 1.08999 * 117.50106 * 145.02016 * 19 10 9 35 35 H 1.09004 * 117.50029 * 214.97047 * 20 10 9 36 36 H 1.08993 * 117.50583 * 359.97438 * 20 10 9 37 37 H 1.08999 * 110.40942 * 158.26055 * 21 8 7 38 38 H 1.08994 * 110.41057 * 280.70278 * 21 8 7 39 39 H 1.08997 * 109.47540 * 177.14039 * 24 22 5 40 40 H 1.09007 * 109.46557 * 297.14177 * 24 22 5 41 41 H 1.08999 * 109.47396 * 57.13374 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9733 0.7515 0.8658 7 6 4.1351 0.6771 -1.3041 8 7 5.2946 1.5435 -1.6385 9 6 5.6388 1.4360 -3.0627 10 6 6.4607 0.1665 -3.2942 11 6 7.6833 0.0164 -2.4260 12 1 7.9847 -0.9621 -2.0823 13 6 8.4170 1.1282 -2.0703 14 7 8.1717 2.2878 -2.6400 15 14 9.7596 0.9874 -0.7792 16 1 10.7833 0.0123 -1.2338 17 1 10.3951 2.3146 -0.5791 18 1 9.1681 0.5233 0.5015 19 6 6.5387 -0.3737 -4.7235 20 6 5.7020 -1.1072 -3.6722 21 6 4.8333 2.9156 -1.3045 22 6 4.0256 2.7475 -0.0002 23 1 3.1625 3.4133 -0.0014 24 6 4.9127 3.0305 1.2138 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.3889 0.7175 -2.0977 29 1 4.4624 -0.3497 -1.1408 30 1 4.7248 1.3902 -3.6549 31 1 6.2225 2.3065 -3.3621 32 1 8.7345 3.0531 -2.4442 33 1 6.0041 0.1750 -5.4988 34 1 7.4741 -0.8381 -5.0358 35 1 6.0873 -2.0538 -3.2934 36 1 4.6172 -1.0409 -3.7556 37 1 5.6863 3.5743 -1.1414 38 1 4.1965 3.3063 -2.0981 39 1 5.2694 4.0595 1.1713 40 1 4.3362 2.8832 2.1272 41 1 5.7643 2.3502 1.2081 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095019619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:23 Heat of formation + Delta-G solvation = -51.843448 kcal Electronic energy + Delta-G solvation = -21677.616660 eV Core-core repulsion = 18558.664879 eV Total energy + Delta-G solvation = -3118.951780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63875 -38.44048 -36.58810 -35.97796 -32.22542 -31.91942 -30.16538 -27.52764 -26.26978 -25.30495 -24.55477 -21.92863 -21.09239 -20.63602 -19.21241 -18.88769 -17.54097 -16.72440 -16.32984 -15.95437 -14.92433 -14.54101 -14.39616 -13.79887 -13.63328 -13.13018 -13.08119 -12.92071 -12.83153 -12.38890 -11.93313 -11.86678 -11.60919 -11.12668 -10.93961 -10.84070 -10.81544 -10.67169 -10.59401 -10.39298 -10.37769 -10.31403 -10.18750 -9.88536 -9.22174 -8.94162 -8.59055 -7.93591 -7.37436 -5.85940 -3.87070 2.28012 2.77107 3.39248 3.43433 3.48228 4.51422 4.65655 4.85328 4.96205 5.03092 5.07598 5.10277 5.28087 5.34734 5.46498 5.60103 5.69651 5.71855 5.92990 6.08642 6.12516 6.17066 6.29729 6.32296 6.34254 6.43958 6.49245 6.56886 6.64226 6.70315 6.75071 6.83270 6.99592 7.15838 7.38439 7.53331 7.81020 7.90153 8.09765 8.18133 8.59713 9.05858 9.72369 11.16922 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.006734 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.282720 B = 4157.031609 C = 4896.627524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.471 3.529 4 O -0.512 6.512 5 C -0.086 4.086 6 H 0.116 0.884 7 C 0.051 3.949 8 N -0.459 5.459 9 C 0.092 3.908 10 C 0.070 3.930 11 C -0.471 4.471 12 H 0.053 0.947 13 C 0.090 3.910 14 N -0.879 5.879 15 Si 0.889 3.111 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.276 1.276 19 C -0.209 4.209 20 C -0.217 4.217 21 C 0.041 3.959 22 C -0.089 4.089 23 H 0.089 0.911 24 C -0.137 4.137 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.093 0.907 30 H -0.009 1.009 31 H 0.118 0.882 32 H 0.257 0.743 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.029 0.971 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 -0.814 5.174 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.314 3.686 4 O -0.400 6.400 5 C -0.105 4.105 6 H 0.134 0.866 7 C -0.077 4.077 8 N -0.181 5.181 9 C -0.035 4.035 10 C 0.069 3.931 11 C -0.508 4.508 12 H 0.071 0.929 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.718 3.282 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.247 4.247 20 C -0.255 4.255 21 C -0.087 4.087 22 C -0.108 4.108 23 H 0.108 0.892 24 C -0.194 4.194 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.009 0.991 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.673 -0.447 5.515 12.022 hybrid contribution -0.343 0.061 0.061 0.353 sum -11.016 -0.386 5.576 12.353 Atomic orbital electron populations 1.23233 0.76943 1.03490 1.02293 1.86565 1.22962 1.33628 1.84017 1.23947 0.92334 0.81029 0.71253 1.90603 1.67123 1.36403 1.45861 1.22020 0.85592 0.99973 1.02953 0.86639 1.23059 0.92556 0.99870 0.92239 1.65328 1.29201 1.02036 1.21574 1.21939 0.94737 1.02209 0.84634 1.18895 0.94701 0.88009 0.91485 1.20236 1.08343 0.92832 1.29431 0.92875 1.24712 0.96544 0.94956 0.95098 1.69763 1.38157 1.01046 1.42737 0.86730 0.81646 0.76800 0.83035 1.20880 1.21594 1.20150 1.22977 1.00259 1.06664 0.94832 1.22927 0.95718 0.98999 1.07820 1.23125 0.97746 0.93747 0.94065 1.21971 0.98879 0.93183 0.96779 0.89246 1.21782 0.99783 1.02107 0.95761 0.92123 0.92078 0.88227 0.95122 0.88901 0.99125 0.86466 0.93262 0.92118 0.90485 0.90873 0.92021 0.89514 0.95249 0.92461 0.93501 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.99 10.56 -39.25 -0.41 -5.41 16 3 C 0.47 7.38 7.12 36.00 0.26 7.64 16 4 O -0.51 -8.89 15.00 -18.75 -0.28 -9.17 16 5 C -0.09 -1.36 3.21 -90.40 -0.29 -1.65 16 6 H 0.12 1.70 7.72 -51.92 -0.40 1.30 16 7 C 0.05 0.94 5.64 -2.19 -0.01 0.93 16 8 N -0.46 -9.58 4.85 -230.00 -1.12 -10.69 16 9 C 0.09 2.11 3.94 -3.82 -0.02 2.10 16 10 C 0.07 1.69 1.88 -155.66 -0.29 1.40 16 11 C -0.47 -12.51 8.72 -34.44 -0.30 -12.81 16 12 H 0.05 1.44 7.83 -52.49 -0.41 1.02 16 13 C 0.09 2.36 5.15 -17.82 -0.09 2.27 16 14 N -0.88 -23.38 10.74 55.43 0.60 -22.79 16 15 Si 0.89 20.91 29.55 -169.99 -5.02 15.89 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.21 -4.74 9.96 -26.69 -0.27 -5.00 16 20 C -0.22 -4.70 9.73 -26.69 -0.26 -4.96 16 21 C 0.04 0.77 5.96 -2.20 -0.01 0.76 16 22 C -0.09 -1.44 3.24 -89.27 -0.29 -1.73 16 23 H 0.09 1.46 6.46 -51.93 -0.34 1.12 16 24 C -0.14 -2.01 8.90 37.16 0.33 -1.68 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.56 7.39 -51.93 -0.38 0.18 16 29 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 30 H -0.01 -0.21 7.58 -51.93 -0.39 -0.60 16 31 H 0.12 2.96 5.90 -51.93 -0.31 2.66 16 32 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 35 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.70 7.86 -51.93 -0.41 1.29 16 38 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -28.16 332.62 -8.24 -36.40 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.84 Total: 2.10 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.18 Total: -11.33 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: -0.52 Total: -33.48 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.70 Total: -14.58 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.16 -8.24 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095019619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.445 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds