Wall clock time and date at job start Mon Mar 30 2020 04:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.52168 * 2 1 4 4 C 1.53124 * 109.52173 * 239.87516 * 2 1 3 5 5 C 1.53034 * 109.27756 * 182.37558 * 4 2 1 6 6 N 1.46847 * 109.52630 * 59.17608 * 5 4 2 7 7 C 1.46898 * 111.00127 * 174.15975 * 6 5 4 8 8 C 1.52999 * 109.47224 * 307.60320 * 7 6 5 9 9 C 1.50703 * 115.55237 * 306.12880 * 8 7 6 10 10 H 1.07996 * 120.00462 * 144.32850 * 9 8 7 11 11 C 1.37885 * 119.99775 * 324.33363 * 9 8 7 12 12 N 1.31508 * 119.99722 * 348.84888 * 11 9 8 13 13 Si 1.86799 * 119.99695 * 168.84848 * 11 9 8 14 14 H 1.48503 * 109.47063 * 65.00424 * 13 11 9 15 15 H 1.48504 * 109.46878 * 185.00014 * 13 11 9 16 16 H 1.48499 * 109.47249 * 304.99897 * 13 11 9 17 17 C 1.52996 * 117.49885 * 160.46024 * 8 7 6 18 18 C 1.52996 * 117.50020 * 91.79841 * 8 7 6 19 19 C 1.46843 * 111.19964 * 298.26066 * 6 5 4 20 20 H 1.08998 * 109.46531 * 301.73270 * 19 6 5 21 21 C 1.50699 * 109.46182 * 181.75344 * 19 6 5 22 22 O 1.20821 * 120.00146 * 327.31908 * 21 19 6 23 23 O 1.34235 * 119.99603 * 147.59956 * 21 19 6 24 24 C 1.53040 * 109.52346 * 61.73691 * 19 6 5 25 25 H 1.09003 * 109.47049 * 180.12686 * 1 2 3 26 26 H 1.08997 * 109.47391 * 300.12311 * 1 2 3 27 27 H 1.08999 * 109.47592 * 60.12736 * 1 2 3 28 28 H 1.09000 * 109.50337 * 62.43428 * 4 2 1 29 29 H 1.08993 * 109.50360 * 302.31507 * 4 2 1 30 30 H 1.09000 * 109.46418 * 299.16206 * 5 4 2 31 31 H 1.08997 * 109.46393 * 179.19360 * 5 4 2 32 32 H 1.08997 * 109.46827 * 67.60677 * 7 6 5 33 33 H 1.09003 * 109.46640 * 187.60349 * 7 6 5 34 34 H 0.97006 * 119.99856 * 185.13925 * 12 11 9 35 35 H 1.09004 * 117.50077 * 359.97438 * 17 8 7 36 36 H 1.08995 * 117.50241 * 145.02188 * 17 8 7 37 37 H 1.08995 * 117.50115 * 214.98103 * 18 8 7 38 38 H 1.09005 * 117.49487 * 359.97438 * 18 8 7 39 39 H 0.96701 * 116.99354 * 179.72232 * 23 21 19 40 40 H 1.08996 * 109.50237 * 60.76411 * 24 19 6 41 41 H 1.09008 * 109.50533 * 180.87782 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5708 -0.7731 -1.2130 6 7 4.0116 -1.4766 -0.0017 7 6 5.4686 -1.6641 -0.0026 8 6 5.8973 -2.3223 -1.3155 9 6 5.1882 -3.6066 -1.6606 10 1 4.9585 -3.8367 -2.6905 11 6 4.8326 -4.4877 -0.6615 12 7 5.2980 -4.3224 0.5573 13 14 3.6898 -5.9163 -1.0393 14 1 4.3556 -6.8454 -1.9874 15 1 3.3680 -6.6385 0.2178 16 1 2.4375 -5.4007 -1.6485 17 6 7.3666 -2.1952 -1.7226 18 6 6.2931 -1.4013 -2.4713 19 6 3.5722 -0.7735 1.2103 20 1 3.9677 0.2422 1.2046 21 6 4.0809 -1.5036 2.4266 22 8 4.1982 -2.7059 2.4043 23 8 4.3983 -0.8186 3.5365 24 6 2.0430 -0.7248 1.2473 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3634 0.5157 0.8888 27 1 -0.3634 0.5118 -0.8911 28 1 1.7151 -0.1884 -2.1395 29 1 1.6456 -1.7396 -1.2679 30 1 3.9665 0.2426 -1.2073 31 1 3.9378 -1.3007 -2.0932 32 1 5.9595 -0.6959 0.0958 33 1 5.7531 -2.3025 0.8339 34 1 5.1090 -4.9827 1.2424 35 1 8.0278 -1.6422 -1.0554 36 1 7.8203 -3.0402 -2.2405 37 1 6.0409 -1.7243 -3.4813 38 1 6.2476 -0.3263 -2.2964 39 1 4.7164 -1.3308 4.2925 40 1 1.6470 -1.7400 1.2670 41 1 1.7174 -0.1892 2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129354260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:23 Heat of formation + Delta-G solvation = -58.192332 kcal Electronic energy + Delta-G solvation = -22469.213074 eV Core-core repulsion = 19349.985985 eV Total energy + Delta-G solvation = -3119.227089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99914 -38.19198 -36.43393 -35.35096 -33.38864 -31.83277 -30.72334 -28.24613 -25.38601 -24.49644 -24.02053 -22.14529 -20.98110 -20.23758 -19.15262 -18.74010 -17.31327 -16.27389 -15.78225 -15.10714 -14.68536 -14.49723 -14.26325 -13.86520 -13.59564 -13.43073 -13.08235 -12.66589 -12.33018 -12.13941 -11.90142 -11.58040 -11.24086 -11.17160 -10.87039 -10.76272 -10.73584 -10.60339 -10.40591 -10.34391 -10.27589 -9.90325 -9.77848 -9.43954 -9.16483 -8.85919 -8.46298 -7.82103 -7.23994 -5.70446 -3.72871 2.98329 3.46568 3.51941 3.53512 3.55087 4.61374 4.66608 5.09148 5.10290 5.12803 5.28899 5.57468 5.60646 5.75248 5.77555 5.84824 5.92427 5.96681 6.02003 6.08015 6.15104 6.26217 6.31599 6.37176 6.42328 6.51306 6.59666 6.72607 6.76599 6.82708 6.86817 7.01855 7.11380 7.24292 7.40418 7.70232 8.07417 8.12333 8.22958 8.66538 8.68709 9.16923 9.85880 11.31632 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.009013 C = 0.008848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.438329 B = 3105.888565 C = 3163.953998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.064 0.936 4 C -0.113 4.113 5 C 0.062 3.938 6 N -0.479 5.479 7 C 0.092 3.908 8 C 0.074 3.926 9 C -0.500 4.500 10 H 0.051 0.949 11 C 0.097 3.903 12 N -0.838 5.838 13 Si 0.886 3.114 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.278 1.278 17 C -0.209 4.209 18 C -0.222 4.222 19 C 0.103 3.897 20 H 0.050 0.950 21 C 0.456 3.544 22 O -0.437 6.437 23 O -0.536 6.536 24 C -0.098 4.098 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.012 0.988 31 H 0.103 0.897 32 H -0.019 1.019 33 H 0.125 0.875 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.400 0.600 40 H 0.078 0.922 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 9.267 2.836 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.066 4.066 6 N -0.205 5.205 7 C -0.035 4.035 8 C 0.073 3.927 9 C -0.537 4.537 10 H 0.069 0.931 11 C -0.111 4.111 12 N -0.472 5.472 13 Si 0.715 3.285 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.203 1.203 17 C -0.247 4.247 18 C -0.259 4.259 19 C -0.007 4.007 20 H 0.068 0.932 21 C 0.294 3.706 22 O -0.317 6.317 23 O -0.349 6.349 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.030 0.970 31 H 0.121 0.879 32 H -0.001 1.001 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.257 0.743 40 H 0.097 0.903 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.323 8.599 2.727 11.017 hybrid contribution 0.176 -0.221 0.285 0.401 sum -6.148 8.378 3.013 10.820 Atomic orbital electron populations 1.21792 0.95308 1.01873 1.01094 1.21152 0.95294 0.98983 0.95392 0.91726 1.21701 0.96276 1.01099 0.96006 1.22160 0.94026 0.95167 0.95228 1.61609 1.15118 1.45956 0.97774 1.22005 0.83682 0.95021 1.02775 1.18837 0.91035 0.94058 0.88748 1.20051 1.38874 1.02196 0.92555 0.93051 1.24700 0.94754 0.96954 0.94663 1.69640 1.42187 1.33596 1.01762 0.86798 0.82213 0.82509 0.77024 1.21261 1.21699 1.20325 1.23004 0.95145 1.01725 1.04856 1.23001 1.08735 0.95680 0.98489 1.21050 0.96309 0.94896 0.88443 0.93231 1.23365 0.76074 0.87450 0.83752 1.90913 1.45009 1.14572 1.81244 1.84526 1.79222 1.46449 1.24734 1.21573 0.92152 1.02110 0.97788 0.92532 0.93117 0.92815 0.92242 0.90759 0.96967 0.87879 1.00070 0.85717 0.92823 0.92265 0.90438 0.90802 0.92049 0.74251 0.90317 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.20 37.16 0.34 -1.32 16 2 C -0.09 -1.24 2.79 -90.50 -0.25 -1.49 16 3 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.11 -1.80 5.38 -26.65 -0.14 -1.95 16 5 C 0.06 1.17 4.76 -3.84 -0.02 1.15 16 6 N -0.48 -10.22 3.95 -228.09 -0.90 -11.12 16 7 C 0.09 2.17 3.70 -3.83 -0.01 2.15 16 8 C 0.07 1.82 1.06 -155.66 -0.16 1.65 16 9 C -0.50 -13.54 8.21 -34.44 -0.28 -13.83 16 10 H 0.05 1.41 7.84 -52.49 -0.41 1.00 16 11 C 0.10 2.66 5.15 -17.82 -0.09 2.56 16 12 N -0.84 -23.54 9.12 55.43 0.51 -23.03 16 13 Si 0.89 21.98 29.56 -169.99 -5.02 16.96 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.21 -4.84 9.96 -26.70 -0.27 -5.11 16 18 C -0.22 -4.81 8.18 -26.70 -0.22 -5.03 16 19 C 0.10 1.90 2.33 -68.88 -0.16 1.74 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 21 C 0.46 8.81 6.35 36.01 0.23 9.04 16 22 O -0.44 -10.16 14.51 -18.75 -0.27 -10.43 16 23 O -0.54 -8.26 13.42 -39.27 -0.53 -8.79 16 24 C -0.10 -1.54 4.64 -26.65 -0.12 -1.66 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 2.18 5.30 -51.93 -0.28 1.90 16 32 H -0.02 -0.43 8.08 -51.93 -0.42 -0.85 16 33 H 0.13 3.32 4.26 -51.93 -0.22 3.10 16 34 H 0.26 7.37 8.32 -40.82 -0.34 7.03 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.40 4.51 9.10 45.56 0.41 4.92 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -29.99 320.49 -8.52 -38.51 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.97 Total: 5.17 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.16 Total: -12.09 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.40 Total: -34.16 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.80 Total: -19.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.99 -8.52 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129354260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.678 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds