Wall clock time and date at job start Mon Mar 30 2020 04:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.52168 * 2 1 4 4 C 1.53124 * 109.52173 * 239.87516 * 2 1 3 5 5 C 1.53034 * 109.27756 * 182.37558 * 4 2 1 6 6 N 1.46847 * 109.52630 * 59.17608 * 5 4 2 7 7 C 1.46898 * 111.00127 * 174.15975 * 6 5 4 8 8 C 1.52999 * 109.47224 * 307.60320 * 7 6 5 9 9 C 1.50703 * 115.55237 * 306.12880 * 8 7 6 10 10 H 1.07996 * 120.00462 * 144.32850 * 9 8 7 11 11 C 1.37885 * 119.99775 * 324.33363 * 9 8 7 12 12 N 1.31508 * 119.99722 * 348.84888 * 11 9 8 13 13 Si 1.86799 * 119.99695 * 168.84848 * 11 9 8 14 14 H 1.48503 * 109.47063 * 65.00424 * 13 11 9 15 15 H 1.48504 * 109.46878 * 185.00014 * 13 11 9 16 16 H 1.48499 * 109.47249 * 304.99897 * 13 11 9 17 17 C 1.52996 * 117.49885 * 160.46024 * 8 7 6 18 18 C 1.52996 * 117.50020 * 91.79841 * 8 7 6 19 19 C 1.46843 * 111.19964 * 298.26066 * 6 5 4 20 20 H 1.08998 * 109.46531 * 301.73270 * 19 6 5 21 21 C 1.50699 * 109.46182 * 181.75344 * 19 6 5 22 22 O 1.20821 * 120.00146 * 327.31908 * 21 19 6 23 23 O 1.34235 * 119.99603 * 147.59956 * 21 19 6 24 24 C 1.53040 * 109.52346 * 61.73691 * 19 6 5 25 25 H 1.09003 * 109.47049 * 180.12686 * 1 2 3 26 26 H 1.08997 * 109.47391 * 300.12311 * 1 2 3 27 27 H 1.08999 * 109.47592 * 60.12736 * 1 2 3 28 28 H 1.09000 * 109.50337 * 62.43428 * 4 2 1 29 29 H 1.08993 * 109.50360 * 302.31507 * 4 2 1 30 30 H 1.09000 * 109.46418 * 299.16206 * 5 4 2 31 31 H 1.08997 * 109.46393 * 179.19360 * 5 4 2 32 32 H 1.08997 * 109.46827 * 67.60677 * 7 6 5 33 33 H 1.09003 * 109.46640 * 187.60349 * 7 6 5 34 34 H 0.97006 * 119.99856 * 185.13925 * 12 11 9 35 35 H 1.09004 * 117.50077 * 359.97438 * 17 8 7 36 36 H 1.08995 * 117.50241 * 145.02188 * 17 8 7 37 37 H 1.08995 * 117.50115 * 214.98103 * 18 8 7 38 38 H 1.09005 * 117.49487 * 359.97438 * 18 8 7 39 39 H 0.96701 * 116.99354 * 179.72232 * 23 21 19 40 40 H 1.08996 * 109.50237 * 60.76411 * 24 19 6 41 41 H 1.09008 * 109.50533 * 180.87782 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5708 -0.7731 -1.2130 6 7 4.0116 -1.4766 -0.0017 7 6 5.4686 -1.6641 -0.0026 8 6 5.8973 -2.3223 -1.3155 9 6 5.1882 -3.6066 -1.6606 10 1 4.9585 -3.8367 -2.6905 11 6 4.8326 -4.4877 -0.6615 12 7 5.2980 -4.3224 0.5573 13 14 3.6898 -5.9163 -1.0393 14 1 4.3556 -6.8454 -1.9874 15 1 3.3680 -6.6385 0.2178 16 1 2.4375 -5.4007 -1.6485 17 6 7.3666 -2.1952 -1.7226 18 6 6.2931 -1.4013 -2.4713 19 6 3.5722 -0.7735 1.2103 20 1 3.9677 0.2422 1.2046 21 6 4.0809 -1.5036 2.4266 22 8 4.1982 -2.7059 2.4043 23 8 4.3983 -0.8186 3.5365 24 6 2.0430 -0.7248 1.2473 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3634 0.5157 0.8888 27 1 -0.3634 0.5118 -0.8911 28 1 1.7151 -0.1884 -2.1395 29 1 1.6456 -1.7396 -1.2679 30 1 3.9665 0.2426 -1.2073 31 1 3.9378 -1.3007 -2.0932 32 1 5.9595 -0.6959 0.0958 33 1 5.7531 -2.3025 0.8339 34 1 5.1090 -4.9827 1.2424 35 1 8.0278 -1.6422 -1.0554 36 1 7.8203 -3.0402 -2.2405 37 1 6.0409 -1.7243 -3.4813 38 1 6.2476 -0.3263 -2.2964 39 1 4.7164 -1.3308 4.2925 40 1 1.6470 -1.7400 1.2670 41 1 1.7174 -0.1892 2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129354260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:23 Heat of formation + Delta-G solvation = -76.800718 kcal Electronic energy + Delta-G solvation = -22470.019994 eV Core-core repulsion = 19349.985985 eV Total energy + Delta-G solvation = -3120.034009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47123 -39.67359 -38.08236 -36.79071 -34.80314 -33.90602 -32.10841 -29.57994 -27.38112 -25.92928 -25.52651 -23.64869 -22.68227 -21.55172 -20.67712 -20.46210 -18.74920 -18.09499 -17.33050 -16.54419 -16.48353 -16.18976 -15.70003 -15.33762 -15.28118 -14.77286 -14.56381 -14.20385 -13.73758 -13.63779 -13.30130 -13.12437 -12.77763 -12.73566 -12.64178 -12.35463 -12.30853 -12.20324 -12.12643 -11.94949 -11.68290 -11.49623 -11.20522 -11.02004 -10.96310 -10.74763 -10.32948 -9.80038 -8.80932 -7.78069 -5.84555 1.44493 1.49506 1.50094 1.53603 2.18756 2.56815 3.08391 3.37959 3.79225 3.88431 3.94179 3.99984 4.21723 4.26648 4.42071 4.49141 4.60308 4.65233 4.73741 4.78540 4.81415 4.84508 4.93440 4.96364 4.98365 5.08946 5.15782 5.17488 5.25512 5.33600 5.42833 5.51806 5.57687 5.61641 5.71674 5.87089 6.13189 6.44808 6.51421 6.69294 7.06636 7.30976 7.74475 9.18946 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.009013 C = 0.008848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.438329 B = 3105.888565 C = 3163.953998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.108 4.108 5 C 0.063 3.937 6 N -0.501 5.501 7 C 0.104 3.896 8 C 0.047 3.953 9 C -0.508 4.508 10 H 0.039 0.961 11 C 0.061 3.939 12 N -0.849 5.849 13 Si 0.929 3.071 14 H -0.282 1.282 15 H -0.297 1.297 16 H -0.277 1.277 17 C -0.214 4.214 18 C -0.191 4.191 19 C 0.098 3.902 20 H 0.066 0.934 21 C 0.460 3.540 22 O -0.485 6.485 23 O -0.523 6.523 24 C -0.093 4.093 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.077 0.923 32 H -0.015 1.015 33 H 0.094 0.906 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.419 0.581 40 H 0.052 0.948 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 11.467 2.714 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.065 4.065 6 N -0.227 5.227 7 C -0.023 4.023 8 C 0.046 3.954 9 C -0.546 4.546 10 H 0.057 0.943 11 C -0.144 4.144 12 N -0.483 5.483 13 Si 0.757 3.243 14 H -0.208 1.208 15 H -0.224 1.224 16 H -0.202 1.202 17 C -0.253 4.253 18 C -0.229 4.229 19 C -0.012 4.012 20 H 0.084 0.916 21 C 0.299 3.701 22 O -0.369 6.369 23 O -0.337 6.337 24 C -0.131 4.131 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.003 0.997 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.279 0.721 40 H 0.071 0.929 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.453 10.821 2.611 13.396 hybrid contribution 0.575 -0.866 0.348 1.096 sum -6.878 9.955 2.959 12.457 Atomic orbital electron populations 1.21748 0.93330 1.01718 1.02764 1.21140 0.96849 0.99129 0.93030 0.89814 1.21668 0.94051 1.00403 0.98490 1.22127 0.96011 0.95057 0.93256 1.61465 1.13610 1.47943 0.99686 1.21662 0.85501 0.94251 1.00875 1.18898 0.91606 0.94273 0.90609 1.20187 1.39113 1.03425 0.91826 0.94308 1.25173 0.95818 0.98691 0.94758 1.69801 1.42939 1.33638 1.01904 0.86108 0.80998 0.80711 0.76442 1.20797 1.22370 1.20237 1.23000 0.94869 1.02076 1.05352 1.22934 1.06066 0.96317 0.97538 1.21229 0.98086 0.94906 0.86949 0.91618 1.23631 0.74948 0.86904 0.84621 1.90904 1.47216 1.16589 1.82203 1.84467 1.78576 1.45989 1.24627 1.21588 0.90007 1.01358 1.00099 0.93638 0.91379 0.91251 0.89732 0.93382 0.95512 0.90511 0.99693 0.88845 0.93903 0.91234 0.91421 0.90572 0.89937 0.72077 0.92903 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.20 71.98 0.66 -2.08 16 2 C -0.08 -2.04 2.79 -10.72 -0.03 -2.07 16 3 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.11 -3.25 5.38 30.65 0.16 -3.08 16 5 C 0.06 2.29 4.76 86.32 0.41 2.70 16 6 N -0.50 -21.16 3.95 -875.53 -3.46 -24.62 16 7 C 0.10 4.93 3.70 86.30 0.32 5.25 16 8 C 0.05 2.30 1.06 -52.93 -0.06 2.24 16 9 C -0.51 -27.94 8.21 25.60 0.21 -27.73 16 10 H 0.04 2.17 7.84 -2.91 -0.02 2.15 16 11 C 0.06 3.41 5.15 84.66 0.44 3.85 16 12 N -0.85 -48.93 9.12 21.45 0.20 -48.73 16 13 Si 0.93 45.99 29.56 68.60 2.03 48.02 16 14 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 15 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 16 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 17 C -0.21 -9.85 9.96 30.62 0.30 -9.54 16 18 C -0.19 -8.05 8.18 30.62 0.25 -7.80 16 19 C 0.10 3.47 2.33 44.19 0.10 3.58 16 20 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 21 C 0.46 17.50 6.35 71.24 0.45 17.95 16 22 O -0.49 -23.00 14.51 21.98 0.32 -22.68 16 23 O -0.52 -15.23 13.42 -51.47 -0.69 -15.92 16 24 C -0.09 -2.71 4.64 30.65 0.14 -2.57 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 3.19 5.30 -2.39 -0.01 3.18 16 32 H -0.01 -0.66 8.08 -2.39 -0.02 -0.68 16 33 H 0.09 5.06 4.26 -2.39 -0.01 5.05 16 34 H 0.25 14.64 8.32 -92.70 -0.77 13.87 16 35 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 36 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 39 H 0.42 8.83 9.10 -74.06 -0.67 8.16 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -65.51 320.49 2.10 -63.41 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.34 Total: 19.82 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 3.37 Total: -19.29 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -3.26 Total: -73.35 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.37 Total: -38.60 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -65.51 2.10 -63.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129354260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.392 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds