Wall clock time and date at job start Mon Mar 30 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.46027 * 2 1 4 4 C 1.54509 * 110.50947 * 237.23978 * 2 1 3 5 5 C 1.54480 * 104.06513 * 241.35600 * 4 2 1 6 6 O 1.44425 * 104.80174 * 23.98024 * 5 4 2 7 7 C 1.44425 * 105.27893 * 319.49032 * 6 5 4 8 8 H 1.09004 * 110.36850 * 281.68031 * 7 6 5 9 9 C 1.50694 * 110.46668 * 159.38728 * 7 6 5 10 10 O 1.21285 * 120.00326 * 358.01395 * 9 7 6 11 11 N 1.34783 * 119.99947 * 178.01215 * 9 7 6 12 12 C 1.37093 * 120.00423 * 180.02562 * 11 9 7 13 13 H 1.07998 * 120.00039 * 218.95908 * 12 11 9 14 14 C 1.38952 * 119.99650 * 38.95481 * 12 11 9 15 15 N 1.31412 * 119.99799 * 209.23945 * 14 12 11 16 16 Si 1.86802 * 120.00146 * 29.24084 * 14 12 11 17 17 H 1.48497 * 109.46863 * 95.31543 * 16 14 12 18 18 H 1.48496 * 109.46979 * 215.31440 * 16 14 12 19 19 H 1.48499 * 109.47120 * 335.31184 * 16 14 12 20 20 C 1.46499 * 119.99711 * 0.02562 * 11 9 7 21 21 C 1.54263 * 110.03475 * 236.72684 * 20 11 9 22 22 C 1.54889 * 104.19997 * 217.10876 * 21 20 11 23 23 C 1.54885 * 102.74690 * 37.93854 * 22 21 20 24 24 C 1.53877 * 110.03413 * 119.56296 * 20 11 9 25 25 H 1.08995 * 109.47466 * 297.40046 * 1 2 3 26 26 H 1.09011 * 109.47256 * 57.39812 * 1 2 3 27 27 H 1.09004 * 109.47281 * 177.39587 * 1 2 3 28 28 H 1.09001 * 110.51573 * 0.02562 * 4 2 1 29 29 H 1.09002 * 110.50810 * 122.57760 * 4 2 1 30 30 H 1.08996 * 110.36834 * 142.81340 * 5 4 2 31 31 H 1.08999 * 110.37324 * 265.04234 * 5 4 2 32 32 H 0.97003 * 119.99909 * 180.02562 * 15 14 12 33 33 H 1.09007 * 110.02049 * 358.17419 * 20 11 9 34 34 H 1.09005 * 110.48340 * 335.78926 * 21 20 11 35 35 H 1.09002 * 110.48979 * 98.42489 * 21 20 11 36 36 H 1.09000 * 110.75248 * 279.62732 * 22 21 20 37 37 H 1.09002 * 110.75476 * 156.25980 * 22 21 20 38 38 H 1.09006 * 110.48626 * 203.37885 * 23 22 21 39 39 H 1.09009 * 110.48475 * 80.73996 * 23 22 21 40 40 H 1.09000 * 110.03126 * 238.57032 * 24 20 11 41 41 H 1.08997 * 110.02891 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7831 -1.2170 5 6 2.8757 -1.9431 -0.5894 6 8 2.3069 -2.1168 0.7267 7 6 2.0712 -0.7796 1.2190 8 1 3.0023 -0.3352 1.5707 9 6 1.0488 -0.7982 2.3259 10 8 0.5278 -1.8435 2.6528 11 7 0.7133 0.3469 2.9527 12 6 -0.2164 0.3300 3.9601 13 1 -0.9346 1.1320 4.0455 14 6 -0.2346 -0.7190 4.8711 15 7 -1.3642 -1.0756 5.4401 16 14 1.3467 -1.6223 5.2871 17 1 1.9401 -1.0404 6.5177 18 1 1.0509 -3.0600 5.5122 19 1 2.3061 -1.4847 4.1620 20 6 1.3422 1.6096 2.5574 21 6 2.0250 2.2641 3.7761 22 6 1.7801 3.7809 3.5796 23 6 0.3417 3.8234 3.0067 24 6 0.2720 2.6011 2.0683 25 1 -0.3634 0.4729 0.9123 26 1 -0.3634 0.5538 -0.8658 27 1 -0.3634 -1.0266 -0.0467 28 1 1.2490 -1.1699 -1.8189 29 1 2.7200 -0.1489 -1.8213 30 1 2.7534 -2.8519 -1.1786 31 1 3.9304 -1.6778 -0.5168 32 1 -1.3768 -1.8077 6.0764 33 1 2.0740 1.4314 1.7695 34 1 1.5641 1.9200 4.7020 35 1 3.0932 2.0472 3.7771 36 1 2.4921 4.1980 2.8674 37 1 1.8321 4.3072 4.5328 38 1 0.1814 4.7445 2.4462 39 1 -0.3911 3.7312 3.8084 40 1 0.4849 2.9047 1.0433 41 1 -0.7153 2.1426 2.1245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160584669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:45 Heat of formation + Delta-G solvation = -66.353106 kcal Electronic energy + Delta-G solvation = -22727.576899 eV Core-core repulsion = 19607.995933 eV Total energy + Delta-G solvation = -3119.580966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22795 -38.29939 -36.76194 -33.62299 -33.06562 -31.80595 -29.69263 -28.24441 -27.13646 -26.72080 -24.43945 -22.44945 -20.92389 -20.21949 -19.68430 -19.23201 -17.01590 -16.35410 -16.03740 -15.31613 -15.10442 -14.88186 -14.35384 -14.08748 -13.69718 -13.17329 -13.11476 -12.89345 -12.59975 -12.24037 -12.16713 -11.94061 -11.38735 -11.25918 -11.12746 -10.86794 -10.71203 -10.65004 -10.62003 -10.55705 -10.45723 -10.19878 -10.13745 -9.97166 -9.64611 -9.45689 -8.60890 -8.22460 -7.51913 -6.21269 -3.82014 3.27936 3.57173 3.59541 3.89645 3.99896 4.59625 4.63806 4.74860 4.95820 5.02252 5.06967 5.14743 5.22287 5.34319 5.39875 5.49153 5.62687 5.72757 5.74611 5.81986 5.86715 5.93638 6.02327 6.07079 6.09062 6.11192 6.12393 6.25000 6.32847 6.33937 6.41513 6.47056 6.71152 6.75757 6.89025 6.95911 7.10491 7.87828 8.07620 8.85957 9.04697 9.51256 9.95302 10.85198 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.011376 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.588144 B = 2460.813018 C = 3573.298540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.150 4.150 5 C 0.040 3.960 6 O -0.343 6.343 7 C 0.061 3.939 8 H 0.074 0.926 9 C 0.475 3.525 10 O -0.537 6.537 11 N -0.453 5.453 12 C -0.354 4.354 13 H 0.096 0.904 14 C 0.104 3.896 15 N -0.847 5.847 16 Si 0.911 3.089 17 H -0.303 1.303 18 H -0.289 1.289 19 H -0.275 1.275 20 C 0.122 3.878 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.129 4.129 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.271 0.729 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 8.106 -10.517 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 H 0.103 0.897 4 C -0.188 4.188 5 C -0.038 4.038 6 O -0.261 6.261 7 C -0.001 4.001 8 H 0.092 0.908 9 C 0.263 3.737 10 O -0.418 6.418 11 N -0.176 5.176 12 C -0.479 4.479 13 H 0.113 0.887 14 C -0.107 4.107 15 N -0.480 5.480 16 Si 0.742 3.258 17 H -0.233 1.233 18 H -0.215 1.215 19 H -0.200 1.200 20 C 0.017 3.983 21 C -0.173 4.173 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.167 4.167 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.671 7.234 -10.116 14.612 hybrid contribution 0.990 -0.317 0.087 1.043 sum 8.660 6.917 -10.029 14.948 Atomic orbital electron populations 1.22044 0.93203 1.02963 1.02996 1.22513 0.98175 0.99064 0.93244 0.89672 1.23053 1.00370 0.97405 0.97991 1.23406 0.96496 0.98840 0.85025 1.89287 1.82565 1.24458 1.29779 1.23031 0.97995 0.84091 0.94950 0.90820 1.19539 0.85067 0.85726 0.83320 1.90446 1.54768 1.30483 1.66068 1.43737 1.37775 1.04047 1.31996 1.18503 1.10594 1.11654 1.07132 0.88661 1.25183 0.96448 0.94977 0.94093 1.69870 1.25350 1.26021 1.26804 0.86252 0.84597 0.79101 0.75891 1.23252 1.21527 1.20011 1.21919 0.93850 0.86533 0.95989 1.22739 0.99336 0.94295 1.00930 1.22412 0.96725 0.96574 1.00107 1.22282 0.97161 0.97076 0.99089 1.22477 1.01003 0.95569 0.97686 0.89733 0.93102 0.92100 0.90477 0.90800 0.89288 0.92716 0.91896 0.91027 0.88950 0.92755 0.92352 0.92039 0.92678 0.91272 0.92639 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.05 37.16 0.30 -2.33 16 2 C -0.11 -1.71 2.66 -89.05 -0.24 -1.95 16 3 H 0.09 1.12 6.80 -51.93 -0.35 0.76 16 4 C -0.15 -1.91 6.74 -25.16 -0.17 -2.07 16 5 C 0.04 0.56 7.63 37.93 0.29 0.85 16 6 O -0.34 -7.09 10.92 -54.38 -0.59 -7.68 16 7 C 0.06 1.20 2.66 -27.11 -0.07 1.13 16 8 H 0.07 1.34 7.56 -51.93 -0.39 0.94 16 9 C 0.48 11.71 3.07 -10.99 -0.03 11.67 16 10 O -0.54 -15.89 12.74 -13.60 -0.17 -16.07 16 11 N -0.45 -10.50 1.31 -106.54 -0.14 -10.64 16 12 C -0.35 -9.57 7.79 -14.93 -0.12 -9.68 16 13 H 0.10 2.66 7.43 -52.49 -0.39 2.27 16 14 C 0.10 3.03 4.55 -17.47 -0.08 2.95 16 15 N -0.85 -25.79 13.96 55.50 0.77 -25.01 16 16 Si 0.91 24.97 25.79 -169.99 -4.38 20.59 16 17 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 18 H -0.29 -8.26 7.11 56.52 0.40 -7.86 16 19 H -0.27 -7.56 5.69 56.52 0.32 -7.24 16 20 C 0.12 2.18 2.38 -66.81 -0.16 2.02 16 21 C -0.13 -2.29 6.41 -25.07 -0.16 -2.45 16 22 C -0.12 -1.64 6.91 -24.74 -0.17 -1.81 16 23 C -0.12 -1.69 6.83 -25.08 -0.17 -1.86 16 24 C -0.13 -2.05 5.13 -25.62 -0.13 -2.18 16 25 H 0.08 1.64 4.05 -51.93 -0.21 1.43 16 26 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.27 7.85 8.31 -40.82 -0.34 7.51 16 33 H 0.07 1.14 4.23 -51.92 -0.22 0.92 16 34 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.50 6.43 -51.93 -0.33 1.16 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -33.60 304.51 -7.37 -40.97 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.53 Total: -1.04 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.91 Total: -5.70 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.63 Total: -35.66 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.77 Total: -23.75 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -4.38 Total: 20.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.60 -7.37 -40.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160584669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.380 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds