Wall clock time and date at job start Mon Mar 30 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.46027 * 2 1 4 4 C 1.54509 * 110.50947 * 237.23978 * 2 1 3 5 5 C 1.54480 * 104.06513 * 241.35600 * 4 2 1 6 6 O 1.44425 * 104.80174 * 23.98024 * 5 4 2 7 7 C 1.44425 * 105.27893 * 319.49032 * 6 5 4 8 8 H 1.09004 * 110.36850 * 281.68031 * 7 6 5 9 9 C 1.50694 * 110.46668 * 159.38728 * 7 6 5 10 10 O 1.21285 * 120.00326 * 358.01395 * 9 7 6 11 11 N 1.34783 * 119.99947 * 178.01215 * 9 7 6 12 12 C 1.37093 * 120.00423 * 180.02562 * 11 9 7 13 13 H 1.07998 * 120.00039 * 218.95908 * 12 11 9 14 14 C 1.38952 * 119.99650 * 38.95481 * 12 11 9 15 15 N 1.31412 * 119.99799 * 209.23945 * 14 12 11 16 16 Si 1.86802 * 120.00146 * 29.24084 * 14 12 11 17 17 H 1.48497 * 109.46863 * 95.31543 * 16 14 12 18 18 H 1.48496 * 109.46979 * 215.31440 * 16 14 12 19 19 H 1.48499 * 109.47120 * 335.31184 * 16 14 12 20 20 C 1.46499 * 119.99711 * 0.02562 * 11 9 7 21 21 C 1.54263 * 110.03475 * 236.72684 * 20 11 9 22 22 C 1.54889 * 104.19997 * 217.10876 * 21 20 11 23 23 C 1.54885 * 102.74690 * 37.93854 * 22 21 20 24 24 C 1.53877 * 110.03413 * 119.56296 * 20 11 9 25 25 H 1.08995 * 109.47466 * 297.40046 * 1 2 3 26 26 H 1.09011 * 109.47256 * 57.39812 * 1 2 3 27 27 H 1.09004 * 109.47281 * 177.39587 * 1 2 3 28 28 H 1.09001 * 110.51573 * 0.02562 * 4 2 1 29 29 H 1.09002 * 110.50810 * 122.57760 * 4 2 1 30 30 H 1.08996 * 110.36834 * 142.81340 * 5 4 2 31 31 H 1.08999 * 110.37324 * 265.04234 * 5 4 2 32 32 H 0.97003 * 119.99909 * 180.02562 * 15 14 12 33 33 H 1.09007 * 110.02049 * 358.17419 * 20 11 9 34 34 H 1.09005 * 110.48340 * 335.78926 * 21 20 11 35 35 H 1.09002 * 110.48979 * 98.42489 * 21 20 11 36 36 H 1.09000 * 110.75248 * 279.62732 * 22 21 20 37 37 H 1.09002 * 110.75476 * 156.25980 * 22 21 20 38 38 H 1.09006 * 110.48626 * 203.37885 * 23 22 21 39 39 H 1.09009 * 110.48475 * 80.73996 * 23 22 21 40 40 H 1.09000 * 110.03126 * 238.57032 * 24 20 11 41 41 H 1.08997 * 110.02891 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7831 -1.2170 5 6 2.8757 -1.9431 -0.5894 6 8 2.3069 -2.1168 0.7267 7 6 2.0712 -0.7796 1.2190 8 1 3.0023 -0.3352 1.5707 9 6 1.0488 -0.7982 2.3259 10 8 0.5278 -1.8435 2.6528 11 7 0.7133 0.3469 2.9527 12 6 -0.2164 0.3300 3.9601 13 1 -0.9346 1.1320 4.0455 14 6 -0.2346 -0.7190 4.8711 15 7 -1.3642 -1.0756 5.4401 16 14 1.3467 -1.6223 5.2871 17 1 1.9401 -1.0404 6.5177 18 1 1.0509 -3.0600 5.5122 19 1 2.3061 -1.4847 4.1620 20 6 1.3422 1.6096 2.5574 21 6 2.0250 2.2641 3.7761 22 6 1.7801 3.7809 3.5796 23 6 0.3417 3.8234 3.0067 24 6 0.2720 2.6011 2.0683 25 1 -0.3634 0.4729 0.9123 26 1 -0.3634 0.5538 -0.8658 27 1 -0.3634 -1.0266 -0.0467 28 1 1.2490 -1.1699 -1.8189 29 1 2.7200 -0.1489 -1.8213 30 1 2.7534 -2.8519 -1.1786 31 1 3.9304 -1.6778 -0.5168 32 1 -1.3768 -1.8077 6.0764 33 1 2.0740 1.4314 1.7695 34 1 1.5641 1.9200 4.7020 35 1 3.0932 2.0472 3.7771 36 1 2.4921 4.1980 2.8674 37 1 1.8321 4.3072 4.5328 38 1 0.1814 4.7445 2.4462 39 1 -0.3911 3.7312 3.8084 40 1 0.4849 2.9047 1.0433 41 1 -0.7153 2.1426 2.1245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160584669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:45 Heat of formation + Delta-G solvation = -88.722956 kcal Electronic energy + Delta-G solvation = -22728.546928 eV Core-core repulsion = 19607.995933 eV Total energy + Delta-G solvation = -3120.550996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79328 -39.72941 -38.40167 -35.37509 -34.65536 -33.71138 -30.99548 -29.50897 -28.62878 -28.19714 -26.22452 -23.81191 -22.28541 -21.44510 -21.16444 -20.92293 -18.75056 -17.86929 -17.54172 -17.14009 -16.60671 -16.16947 -15.81393 -15.75177 -15.20379 -14.92460 -14.67299 -14.46030 -14.06086 -13.80650 -13.69446 -13.50684 -13.09010 -12.67912 -12.57728 -12.46256 -12.28583 -12.15407 -11.91906 -11.79340 -11.76497 -11.65786 -11.63310 -11.32681 -11.29223 -10.81818 -10.73338 -10.15184 -9.50774 -8.47040 -6.01903 1.14073 1.32028 1.32293 1.98015 2.38277 2.48405 3.00060 3.25347 3.50860 3.68032 3.78591 3.87799 3.94262 4.12521 4.23639 4.28149 4.34217 4.42983 4.58051 4.68965 4.70260 4.75629 4.79906 4.82179 4.85001 4.96935 5.00537 5.08013 5.11593 5.19686 5.20271 5.32306 5.41067 5.45289 5.56296 5.67225 5.72035 5.82671 6.00853 6.83032 7.01397 7.42613 7.99650 8.63630 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.011376 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.588144 B = 2460.813018 C = 3573.298540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 H 0.124 0.876 4 C -0.139 4.139 5 C 0.029 3.971 6 O -0.392 6.392 7 C 0.060 3.940 8 H 0.096 0.904 9 C 0.465 3.535 10 O -0.601 6.601 11 N -0.457 5.457 12 C -0.331 4.331 13 H 0.076 0.924 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.952 3.048 17 H -0.285 1.285 18 H -0.313 1.313 19 H -0.276 1.276 20 C 0.114 3.886 21 C -0.141 4.141 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.124 4.124 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.269 0.731 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.129 10.972 -13.650 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 H 0.142 0.858 4 C -0.176 4.176 5 C -0.047 4.047 6 O -0.311 6.311 7 C -0.001 4.001 8 H 0.114 0.886 9 C 0.255 3.745 10 O -0.485 6.485 11 N -0.179 5.179 12 C -0.458 4.458 13 H 0.094 0.906 14 C -0.148 4.148 15 N -0.530 5.530 16 Si 0.782 3.218 17 H -0.213 1.213 18 H -0.242 1.242 19 H -0.201 1.201 20 C 0.011 3.989 21 C -0.179 4.179 22 C -0.145 4.145 23 C -0.155 4.155 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.703 10.164 -13.262 19.843 hybrid contribution 0.031 -1.195 0.942 1.522 sum 10.735 8.970 -12.320 18.640 Atomic orbital electron populations 1.21995 0.94997 1.00835 1.03127 1.22592 0.96539 1.00804 0.92380 0.85846 1.23051 1.00821 0.96853 0.96883 1.23780 0.97919 1.00454 0.82537 1.89250 1.83481 1.25325 1.33015 1.23068 0.97112 0.85121 0.94785 0.88621 1.20607 0.85186 0.84841 0.83850 1.90406 1.57250 1.32888 1.67983 1.43881 1.37297 1.06037 1.30688 1.18394 1.10765 1.09883 1.06730 0.90628 1.25713 0.97793 0.96180 0.95102 1.69948 1.26545 1.27528 1.28974 0.85623 0.83003 0.76990 0.76135 1.21330 1.24157 1.20150 1.22329 0.94989 0.84236 0.97376 1.22768 0.99863 0.96924 0.98393 1.22394 0.96707 0.93900 1.01488 1.22287 0.97161 0.97734 0.98361 1.22445 0.98264 0.95351 1.00177 0.92629 0.89519 0.95744 0.90400 0.86393 0.88180 0.90058 0.92150 0.87898 0.93049 0.90960 0.88792 0.91340 0.89401 0.94074 0.88829 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 8.05 71.98 0.58 -4.32 16 2 C -0.10 -2.78 2.66 -9.78 -0.03 -2.81 16 3 H 0.12 2.37 6.80 -2.39 -0.02 2.35 16 4 C -0.14 -2.81 6.74 31.61 0.21 -2.59 16 5 C 0.03 0.72 7.63 72.49 0.55 1.28 16 6 O -0.39 -15.71 10.92 -130.67 -1.43 -17.14 16 7 C 0.06 2.24 2.66 30.35 0.08 2.32 16 8 H 0.10 3.11 7.56 -2.38 -0.02 3.09 16 9 C 0.46 23.07 3.07 87.65 0.27 23.34 16 10 O -0.60 -37.01 12.74 15.27 0.19 -36.82 16 11 N -0.46 -21.33 1.31 -609.38 -0.80 -22.12 16 12 C -0.33 -18.66 7.79 84.04 0.66 -18.00 16 13 H 0.08 4.48 7.43 -2.91 -0.02 4.46 16 14 C 0.06 3.53 4.55 84.93 0.39 3.92 16 15 N -0.89 -57.59 13.96 21.66 0.30 -57.28 16 16 Si 0.95 53.52 25.79 68.60 1.77 55.28 16 17 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 18 H -0.31 -18.71 7.11 99.48 0.71 -18.00 16 19 H -0.28 -15.36 5.69 99.48 0.57 -14.79 16 20 C 0.11 3.80 2.38 45.72 0.11 3.90 16 21 C -0.14 -4.47 6.41 31.67 0.20 -4.27 16 22 C -0.11 -2.50 6.91 31.88 0.22 -2.28 16 23 C -0.12 -3.02 6.83 31.66 0.22 -2.81 16 24 C -0.12 -3.62 5.13 31.32 0.16 -3.46 16 25 H 0.05 2.11 4.05 -2.39 -0.01 2.10 16 26 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.59 7.73 -2.39 -0.02 1.57 16 29 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.27 16.59 8.31 -92.71 -0.77 15.82 16 33 H 0.10 2.78 4.23 -2.38 -0.01 2.77 16 34 H 0.05 2.06 6.99 -2.38 -0.02 2.04 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.63 6.43 -2.39 -0.02 1.61 16 Total: -1.00 -81.29 304.51 4.53 -76.76 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.87 Total: 7.08 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 3.62 Total: -5.76 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -0.50 Total: -79.41 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -1.23 Total: -53.96 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 1.77 Total: 55.28 kcal Total: -81.29 4.53 -76.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160584669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.960 kcal (2) G-P(sol) polarization free energy of solvation -81.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds