Wall clock time and date at job start Mon Mar 30 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.43473 * 2 1 4 4 C 1.54810 * 110.48551 * 122.54555 * 2 1 3 5 5 C 1.55000 * 102.12331 * 97.77690 * 4 2 1 6 6 O 1.44470 * 103.44617 * 37.01914 * 5 4 2 7 7 C 1.43744 * 106.98570 * 319.94324 * 6 5 4 8 8 H 1.08993 * 109.88016 * 267.09220 * 7 6 5 9 9 C 1.50703 * 110.00307 * 146.00964 * 7 6 5 10 10 O 1.21294 * 119.99997 * 341.54985 * 9 7 6 11 11 N 1.34769 * 119.99849 * 161.54857 * 9 7 6 12 12 C 1.37100 * 119.99898 * 184.70609 * 11 9 7 13 13 H 1.08003 * 120.00195 * 210.23606 * 12 11 9 14 14 C 1.38949 * 120.00022 * 30.23762 * 12 11 9 15 15 N 1.31417 * 120.00021 * 16.99821 * 14 12 11 16 16 Si 1.86801 * 120.00115 * 197.00085 * 14 12 11 17 17 H 1.48507 * 109.47334 * 59.99647 * 16 14 12 18 18 H 1.48503 * 109.47173 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47101 * 299.99822 * 16 14 12 20 20 C 1.46499 * 120.00316 * 4.71145 * 11 9 7 21 21 C 1.54272 * 110.02866 * 234.53111 * 20 11 9 22 22 C 1.54964 * 104.15835 * 217.13166 * 21 20 11 23 23 C 1.54893 * 102.77689 * 37.88636 * 22 21 20 24 24 C 1.53873 * 110.03622 * 117.31286 * 20 11 9 25 25 H 1.09006 * 109.46876 * 290.48756 * 1 2 3 26 26 H 1.09002 * 109.47152 * 50.48061 * 1 2 3 27 27 H 1.08994 * 109.47451 * 170.48450 * 1 2 3 28 28 H 1.09000 * 110.90448 * 215.99077 * 4 2 1 29 29 H 1.09002 * 110.91291 * 339.55854 * 4 2 1 30 30 H 1.09000 * 110.61554 * 155.54465 * 5 4 2 31 31 H 1.08996 * 110.61498 * 278.53687 * 5 4 2 32 32 H 0.96996 * 119.99717 * 184.94778 * 15 14 12 33 33 H 1.08999 * 110.01475 * 355.91933 * 20 11 9 34 34 H 1.09000 * 110.48936 * 335.77790 * 21 20 11 35 35 H 1.09002 * 110.48842 * 98.42641 * 21 20 11 36 36 H 1.09002 * 110.72149 * 279.57915 * 22 21 20 37 37 H 1.09000 * 110.92670 * 156.29653 * 22 21 20 38 38 H 1.08993 * 110.48863 * 203.40207 * 23 22 21 39 39 H 1.09003 * 110.59737 * 80.81639 * 23 22 21 40 40 H 1.08996 * 110.03137 * 238.56652 * 24 20 11 41 41 H 1.08997 * 110.02816 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0213 0.0000 4 6 2.0718 -0.7802 1.2225 5 6 2.3778 -2.1713 0.6113 6 8 2.8753 -1.8565 -0.7080 7 6 2.0693 -0.7797 -1.2149 8 1 1.2391 -1.1802 -1.7966 9 6 2.9068 0.1297 -2.0767 10 8 4.1163 0.1030 -1.9899 11 7 2.3118 0.9727 -2.9437 12 6 3.0736 1.7301 -3.7955 13 1 2.7206 2.6979 -4.1199 14 6 4.2998 1.2526 -4.2417 15 7 4.5857 -0.0256 -4.1343 16 14 5.5419 2.4274 -4.9943 17 1 5.9031 3.4696 -3.9999 18 1 6.7605 1.6748 -5.3866 19 1 4.9499 3.0719 -6.1940 20 6 0.8511 1.0799 -2.9758 21 6 0.3343 0.8293 -4.4076 22 6 -0.8487 1.8182 -4.5621 23 6 -0.3458 3.0744 -3.8082 24 6 0.4186 2.5065 -2.5946 25 1 -0.3633 0.3597 0.9627 26 1 -0.3633 0.6540 -0.7928 27 1 -0.3634 -1.0134 -0.1699 28 1 2.9797 -0.3166 1.6084 29 1 1.3142 -0.8561 2.0025 30 1 3.1386 -2.6884 1.1959 31 1 1.4694 -2.7701 0.5462 32 1 5.4674 -0.3476 -4.3789 33 1 0.4090 0.3593 -2.2878 34 1 1.1129 1.0490 -5.1382 35 1 -0.0108 -0.1992 -4.5142 36 1 -1.7480 1.4201 -4.0923 37 1 -1.0316 2.0454 -5.6124 38 1 -1.1872 3.6835 -3.4782 39 1 0.3225 3.6591 -4.4404 40 1 -0.2341 2.4782 -1.7222 41 1 1.2956 3.1190 -2.3853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160584797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:47 Heat of formation + Delta-G solvation = -63.311073 kcal Electronic energy + Delta-G solvation = -22483.989218 eV Core-core repulsion = 19364.540164 eV Total energy + Delta-G solvation = -3119.449054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.74344 -38.08278 -36.31677 -33.30814 -32.90683 -31.47638 -29.35433 -28.10406 -26.93546 -26.52832 -24.34272 -22.50082 -20.39377 -20.17292 -19.77602 -19.07063 -16.86437 -15.92572 -15.44117 -15.42798 -14.77531 -14.56913 -14.12196 -13.94252 -13.35833 -13.32736 -12.94909 -12.81275 -12.36856 -12.28296 -12.13369 -11.41704 -11.20420 -10.99481 -10.92301 -10.68741 -10.64717 -10.57388 -10.49364 -10.45893 -10.42047 -10.23177 -10.10552 -10.03234 -9.78430 -9.22683 -8.80623 -7.72365 -6.82157 -5.82544 -3.66710 3.39201 3.46323 3.47492 4.09253 4.43513 4.63636 4.84988 4.99793 5.13967 5.18977 5.22646 5.32254 5.41054 5.46951 5.55895 5.60816 5.70438 5.78254 5.86547 5.99396 6.02389 6.05312 6.10669 6.13257 6.16911 6.21738 6.27659 6.29150 6.36426 6.41846 6.44351 6.57597 6.63743 6.78873 6.96093 7.13897 7.44424 7.70392 8.35056 9.17376 9.37355 9.83432 10.54101 11.13400 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.010027 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.406111 B = 2791.717687 C = 4150.703028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 H 0.086 0.914 4 C -0.148 4.148 5 C 0.044 3.956 6 O -0.346 6.346 7 C 0.073 3.927 8 H 0.065 0.935 9 C 0.446 3.554 10 O -0.496 6.496 11 N -0.447 5.447 12 C -0.325 4.325 13 H 0.081 0.919 14 C 0.044 3.956 15 N -0.799 5.799 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.280 1.280 20 C 0.122 3.878 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.134 4.134 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 0.713 6.150 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 H 0.105 0.895 4 C -0.186 4.186 5 C -0.034 4.034 6 O -0.264 6.264 7 C 0.011 3.989 8 H 0.083 0.917 9 C 0.232 3.768 10 O -0.370 6.370 11 N -0.170 5.170 12 C -0.452 4.452 13 H 0.099 0.901 14 C -0.166 4.166 15 N -0.435 5.435 16 Si 0.733 3.267 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.206 1.206 20 C 0.017 3.983 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.172 4.172 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.752 0.415 6.015 12.327 hybrid contribution 0.375 0.518 -0.254 0.688 sum -10.377 0.933 5.761 11.906 Atomic orbital electron populations 1.22045 0.94514 1.02041 1.02117 1.22436 0.95882 1.01009 0.94066 0.89521 1.23182 1.01524 0.96359 0.97511 1.23503 0.98694 0.96047 0.85132 1.89048 1.56271 1.51381 1.29661 1.22789 0.93170 0.88199 0.94726 0.91739 1.19324 0.88243 0.85501 0.83731 1.90528 1.13883 1.68111 1.64454 1.43368 1.02142 1.39517 1.31933 1.18908 1.02206 0.99304 1.24799 0.90087 1.25001 0.99260 0.94972 0.97389 1.70055 1.20881 1.12786 1.39766 0.86366 0.80828 0.80658 0.78806 1.20529 1.21407 1.20627 1.21878 0.84434 0.95644 0.96345 1.22717 0.97574 0.97697 0.98824 1.22454 0.97780 0.96281 0.99539 1.22272 0.98811 0.97181 0.97325 1.22534 0.99998 0.97743 0.96941 0.92397 0.91355 0.92637 0.90582 0.90679 0.89565 0.92932 0.92830 0.90629 0.89107 0.92854 0.92453 0.92265 0.92819 0.91636 0.92778 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.39 37.16 0.31 -1.62 16 2 C -0.11 -1.91 2.91 -89.09 -0.26 -2.17 16 3 H 0.09 1.59 7.70 -51.93 -0.40 1.19 16 4 C -0.15 -2.16 6.71 -24.72 -0.17 -2.33 16 5 C 0.04 0.69 7.73 38.21 0.30 0.99 16 6 O -0.35 -7.76 10.81 -53.98 -0.58 -8.35 16 7 C 0.07 1.55 2.69 -27.31 -0.07 1.48 16 8 H 0.06 1.31 6.40 -51.93 -0.33 0.98 16 9 C 0.45 11.83 5.98 -10.99 -0.07 11.76 16 10 O -0.50 -15.58 13.20 -13.21 -0.17 -15.76 16 11 N -0.45 -11.05 2.52 -106.54 -0.27 -11.31 16 12 C -0.33 -8.78 7.49 -14.93 -0.11 -8.89 16 13 H 0.08 2.09 7.49 -52.48 -0.39 1.69 16 14 C 0.04 1.27 4.51 -17.47 -0.08 1.19 16 15 N -0.80 -24.60 10.39 55.50 0.58 -24.03 16 16 Si 0.91 22.31 29.59 -169.99 -5.03 17.28 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.12 2.35 2.80 -66.81 -0.19 2.16 16 21 C -0.13 -2.37 6.41 -25.03 -0.16 -2.53 16 22 C -0.12 -1.77 6.91 -24.70 -0.17 -1.94 16 23 C -0.12 -1.74 6.83 -25.07 -0.17 -1.91 16 24 C -0.13 -2.23 6.05 -25.62 -0.15 -2.38 16 25 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 26 H 0.07 0.88 4.83 -51.93 -0.25 0.63 16 27 H 0.05 0.67 8.04 -51.93 -0.42 0.25 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.85 7.81 -51.93 -0.41 0.45 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.87 8.32 -40.82 -0.34 7.53 16 33 H 0.08 1.33 2.89 -51.93 -0.15 1.18 16 34 H 0.09 1.94 6.90 -51.93 -0.36 1.59 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.77 7.01 -51.93 -0.36 0.41 16 41 H 0.08 1.44 7.32 -51.93 -0.38 1.06 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -33.95 311.16 -8.17 -42.12 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.39 Total: 1.54 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.99 Total: -6.19 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.31 Total: -35.34 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.76 Total: -24.11 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.95 -8.17 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160584797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.190 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds