Wall clock time and date at job start Mon Mar 30 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.43473 * 2 1 4 4 C 1.54810 * 110.48551 * 122.54555 * 2 1 3 5 5 C 1.55000 * 102.12331 * 97.77690 * 4 2 1 6 6 O 1.44470 * 103.44617 * 37.01914 * 5 4 2 7 7 C 1.43744 * 106.98570 * 319.94324 * 6 5 4 8 8 H 1.08993 * 109.88016 * 267.09220 * 7 6 5 9 9 C 1.50703 * 110.00307 * 146.00964 * 7 6 5 10 10 O 1.21294 * 119.99997 * 341.54985 * 9 7 6 11 11 N 1.34769 * 119.99849 * 161.54857 * 9 7 6 12 12 C 1.37100 * 119.99898 * 184.70609 * 11 9 7 13 13 H 1.08003 * 120.00195 * 210.23606 * 12 11 9 14 14 C 1.38949 * 120.00022 * 30.23762 * 12 11 9 15 15 N 1.31417 * 120.00021 * 16.99821 * 14 12 11 16 16 Si 1.86801 * 120.00115 * 197.00085 * 14 12 11 17 17 H 1.48507 * 109.47334 * 59.99647 * 16 14 12 18 18 H 1.48503 * 109.47173 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47101 * 299.99822 * 16 14 12 20 20 C 1.46499 * 120.00316 * 4.71145 * 11 9 7 21 21 C 1.54272 * 110.02866 * 234.53111 * 20 11 9 22 22 C 1.54964 * 104.15835 * 217.13166 * 21 20 11 23 23 C 1.54893 * 102.77689 * 37.88636 * 22 21 20 24 24 C 1.53873 * 110.03622 * 117.31286 * 20 11 9 25 25 H 1.09006 * 109.46876 * 290.48756 * 1 2 3 26 26 H 1.09002 * 109.47152 * 50.48061 * 1 2 3 27 27 H 1.08994 * 109.47451 * 170.48450 * 1 2 3 28 28 H 1.09000 * 110.90448 * 215.99077 * 4 2 1 29 29 H 1.09002 * 110.91291 * 339.55854 * 4 2 1 30 30 H 1.09000 * 110.61554 * 155.54465 * 5 4 2 31 31 H 1.08996 * 110.61498 * 278.53687 * 5 4 2 32 32 H 0.96996 * 119.99717 * 184.94778 * 15 14 12 33 33 H 1.08999 * 110.01475 * 355.91933 * 20 11 9 34 34 H 1.09000 * 110.48936 * 335.77790 * 21 20 11 35 35 H 1.09002 * 110.48842 * 98.42641 * 21 20 11 36 36 H 1.09002 * 110.72149 * 279.57915 * 22 21 20 37 37 H 1.09000 * 110.92670 * 156.29653 * 22 21 20 38 38 H 1.08993 * 110.48863 * 203.40207 * 23 22 21 39 39 H 1.09003 * 110.59737 * 80.81639 * 23 22 21 40 40 H 1.08996 * 110.03137 * 238.56652 * 24 20 11 41 41 H 1.08997 * 110.02816 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0213 0.0000 4 6 2.0718 -0.7802 1.2225 5 6 2.3778 -2.1713 0.6113 6 8 2.8753 -1.8565 -0.7080 7 6 2.0693 -0.7797 -1.2149 8 1 1.2391 -1.1802 -1.7966 9 6 2.9068 0.1297 -2.0767 10 8 4.1163 0.1030 -1.9899 11 7 2.3118 0.9727 -2.9437 12 6 3.0736 1.7301 -3.7955 13 1 2.7206 2.6979 -4.1199 14 6 4.2998 1.2526 -4.2417 15 7 4.5857 -0.0256 -4.1343 16 14 5.5419 2.4274 -4.9943 17 1 5.9031 3.4696 -3.9999 18 1 6.7605 1.6748 -5.3866 19 1 4.9499 3.0719 -6.1940 20 6 0.8511 1.0799 -2.9758 21 6 0.3343 0.8293 -4.4076 22 6 -0.8487 1.8182 -4.5621 23 6 -0.3458 3.0744 -3.8082 24 6 0.4186 2.5065 -2.5946 25 1 -0.3633 0.3597 0.9627 26 1 -0.3633 0.6540 -0.7928 27 1 -0.3634 -1.0134 -0.1699 28 1 2.9797 -0.3166 1.6084 29 1 1.3142 -0.8561 2.0025 30 1 3.1386 -2.6884 1.1959 31 1 1.4694 -2.7701 0.5462 32 1 5.4674 -0.3476 -4.3789 33 1 0.4090 0.3593 -2.2878 34 1 1.1129 1.0490 -5.1382 35 1 -0.0108 -0.1992 -4.5142 36 1 -1.7480 1.4201 -4.0923 37 1 -1.0316 2.0454 -5.6124 38 1 -1.1872 3.6835 -3.4782 39 1 0.3225 3.6591 -4.4404 40 1 -0.2341 2.4782 -1.7222 41 1 1.2956 3.1190 -2.3853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160584797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:46 Heat of formation + Delta-G solvation = -85.260568 kcal Electronic energy + Delta-G solvation = -22484.941019 eV Core-core repulsion = 19364.540164 eV Total energy + Delta-G solvation = -3120.400855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35566 -39.62247 -38.06981 -35.01367 -34.57027 -33.40614 -30.77907 -29.44897 -28.42618 -28.07324 -26.09727 -23.96622 -21.90742 -21.44951 -21.28170 -20.77770 -18.65829 -17.70415 -16.98853 -16.77332 -16.58151 -16.09505 -15.75052 -15.43422 -15.16597 -14.76587 -14.58616 -14.13924 -13.93804 -13.48041 -13.38364 -13.23609 -12.86511 -12.78233 -12.54714 -12.30508 -12.20247 -12.08030 -12.00887 -11.83959 -11.78443 -11.69632 -11.57255 -11.34592 -11.24558 -10.87247 -10.71482 -9.73862 -8.90713 -7.98692 -5.83835 1.37040 1.44521 1.48374 2.31654 2.49740 2.94941 3.29633 3.39746 3.58557 3.82531 3.85013 3.95666 4.00280 4.12270 4.29667 4.34331 4.46817 4.51211 4.58922 4.68935 4.75590 4.77980 4.82709 4.85164 4.93173 4.96740 5.01669 5.10592 5.13458 5.18360 5.21497 5.30836 5.40089 5.43680 5.57531 5.58799 5.66892 6.00094 6.23427 7.06860 7.35955 7.80486 8.53711 8.96574 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.010027 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.406111 B = 2791.717687 C = 4150.703028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.062 0.938 4 C -0.140 4.140 5 C 0.035 3.965 6 O -0.396 6.396 7 C 0.078 3.922 8 H 0.073 0.927 9 C 0.427 3.573 10 O -0.561 6.561 11 N -0.455 5.455 12 C -0.325 4.325 13 H 0.088 0.912 14 C -0.013 4.013 15 N -0.842 5.842 16 Si 0.965 3.035 17 H -0.282 1.282 18 H -0.296 1.296 19 H -0.257 1.257 20 C 0.113 3.887 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.128 4.128 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.249 0.751 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 1.492 7.464 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.080 0.920 4 C -0.177 4.177 5 C -0.041 4.041 6 O -0.315 6.315 7 C 0.017 3.983 8 H 0.091 0.909 9 C 0.215 3.785 10 O -0.440 6.440 11 N -0.177 5.177 12 C -0.453 4.453 13 H 0.106 0.894 14 C -0.219 4.219 15 N -0.480 5.480 16 Si 0.791 3.209 17 H -0.208 1.208 18 H -0.222 1.222 19 H -0.182 1.182 20 C 0.009 3.991 21 C -0.172 4.172 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.167 4.167 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.479 1.225 7.315 16.268 hybrid contribution 1.463 0.259 -0.608 1.605 sum -13.016 1.484 6.707 14.718 Atomic orbital electron populations 1.22025 0.90784 1.03210 1.03986 1.22412 0.98779 0.99002 0.92645 0.91977 1.23191 1.02158 0.94775 0.97606 1.23871 1.00331 0.97328 0.82567 1.88993 1.57813 1.51762 1.32932 1.22709 0.91883 0.87808 0.95910 0.90905 1.20413 0.88324 0.85973 0.83792 1.90474 1.16746 1.70049 1.66691 1.43636 1.04611 1.38652 1.30821 1.19198 1.02503 0.99679 1.23910 0.89447 1.25885 1.01501 0.96209 0.98274 1.70218 1.20382 1.14806 1.42628 0.85430 0.78359 0.78503 0.78630 1.20768 1.22195 1.18157 1.22266 0.81069 0.98120 0.97656 1.22688 0.98258 0.99334 0.96913 1.22420 0.96885 0.94621 1.00721 1.22275 0.99377 0.97512 0.96069 1.22483 0.99687 0.95219 0.99297 0.89201 0.91395 0.91190 0.92181 0.86102 0.88401 0.89850 0.94131 0.88720 0.93206 0.92415 0.89328 0.91122 0.89291 0.93330 0.89423 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.39 71.98 0.60 -2.43 16 2 C -0.11 -3.44 2.91 -9.80 -0.03 -3.47 16 3 H 0.06 2.25 7.70 -2.39 -0.02 2.23 16 4 C -0.14 -3.74 6.71 31.90 0.21 -3.52 16 5 C 0.03 1.05 7.73 72.67 0.56 1.61 16 6 O -0.40 -18.08 10.81 -131.05 -1.42 -19.49 16 7 C 0.08 3.35 2.69 30.22 0.08 3.43 16 8 H 0.07 2.92 6.40 -2.39 -0.02 2.90 16 9 C 0.43 23.60 5.98 87.66 0.52 24.13 16 10 O -0.56 -37.43 13.20 14.86 0.20 -37.24 16 11 N -0.46 -23.21 2.52 -609.38 -1.54 -24.75 16 12 C -0.32 -18.21 7.49 84.04 0.63 -17.58 16 13 H 0.09 4.64 7.49 -2.91 -0.02 4.62 16 14 C -0.01 -0.78 4.51 84.93 0.38 -0.40 16 15 N -0.84 -55.06 10.39 21.66 0.23 -54.84 16 16 Si 0.96 47.77 29.59 68.60 2.03 49.80 16 17 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 18 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.11 4.23 2.80 45.72 0.13 4.35 16 21 C -0.13 -4.76 6.41 31.70 0.20 -4.55 16 22 C -0.11 -2.76 6.91 31.91 0.22 -2.54 16 23 C -0.11 -3.01 6.83 31.67 0.22 -2.80 16 24 C -0.13 -4.01 6.05 31.32 0.19 -3.82 16 25 H 0.09 1.39 8.07 -2.38 -0.02 1.37 16 26 H 0.07 1.44 4.83 -2.39 -0.01 1.43 16 27 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.12 2.13 7.81 -2.39 -0.02 2.11 16 30 H 0.10 2.63 8.14 -2.39 -0.02 2.62 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.25 16.09 8.32 -92.71 -0.77 15.32 16 33 H 0.10 3.15 2.89 -2.39 -0.01 3.15 16 34 H 0.05 2.18 6.90 -2.39 -0.02 2.16 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 2.14 7.01 -2.39 -0.02 2.13 16 41 H 0.04 1.71 7.32 -2.39 -0.02 1.69 16 Total: -1.00 -81.53 311.16 4.44 -77.09 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.01 Total: 17.03 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 3.93 Total: -7.60 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.31 Total: -79.59 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -1.22 Total: -56.73 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -81.53 4.44 -77.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160584797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.168 kcal (2) G-P(sol) polarization free energy of solvation -81.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds