Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45960 * 2 1 4 4 C 1.53041 * 109.45983 * 240.02345 * 2 1 3 5 5 C 1.53113 * 109.28254 * 299.16478 * 4 2 1 6 6 H 1.09009 * 109.52268 * 62.24762 * 5 4 2 7 7 C 1.50700 * 109.52517 * 182.43784 * 5 4 2 8 8 O 1.20830 * 119.99838 * 359.97438 * 7 5 4 9 9 O 1.34224 * 120.00030 * 180.02562 * 7 5 4 10 10 C 1.53118 * 109.16129 * 302.34407 * 5 4 2 11 11 C 1.53044 * 109.27604 * 57.65548 * 10 5 4 12 12 N 1.46849 * 109.46506 * 119.97367 * 2 1 3 13 13 C 1.46896 * 111.00229 * 294.17816 * 12 2 1 14 14 C 1.52997 * 109.47201 * 176.44830 * 13 12 2 15 15 C 1.50703 * 115.55135 * 54.39978 * 14 13 12 16 16 H 1.07999 * 119.99322 * 249.72791 * 15 14 13 17 17 C 1.37876 * 120.00190 * 69.72002 * 15 14 13 18 18 N 1.31512 * 120.00178 * 355.69288 * 17 15 14 19 19 Si 1.86798 * 119.99739 * 175.69450 * 17 15 14 20 20 H 1.48498 * 109.47449 * 90.00278 * 19 17 15 21 21 H 1.48502 * 109.47340 * 329.99797 * 19 17 15 22 22 H 1.48503 * 109.46980 * 209.99887 * 19 17 15 23 23 C 1.53008 * 117.51791 * 200.09298 * 14 13 12 24 24 C 1.52999 * 117.50147 * 268.72410 * 14 13 12 25 25 H 1.09007 * 109.46710 * 300.02484 * 1 2 3 26 26 H 1.08996 * 109.47254 * 60.02542 * 1 2 3 27 27 H 1.08994 * 109.47045 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.49949 * 59.10849 * 4 2 1 29 29 H 1.09004 * 109.50010 * 179.21714 * 4 2 1 30 30 H 0.96704 * 117.00236 * 179.97438 * 9 7 5 31 31 H 1.08996 * 109.50126 * 177.59061 * 10 5 4 32 32 H 1.08997 * 109.50552 * 297.67280 * 10 5 4 33 33 H 1.09000 * 109.45975 * 180.80555 * 11 10 5 34 34 H 1.08998 * 109.46532 * 60.83566 * 11 10 5 35 35 H 1.09004 * 109.47516 * 56.44559 * 13 12 2 36 36 H 1.08999 * 109.46731 * 296.44929 * 13 12 2 37 37 H 0.97005 * 119.99900 * 5.32432 * 18 17 15 38 38 H 1.08999 * 117.50093 * 214.97313 * 23 14 13 39 39 H 1.09000 * 117.49709 * 359.97438 * 23 14 13 40 40 H 1.09001 * 117.49646 * 359.97438 * 24 14 13 41 41 H 1.08998 * 117.49975 * 144.97331 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 6 1.5442 -2.1696 -1.2356 6 1 0.4547 -2.1822 -1.2672 7 6 2.0925 -2.9014 -2.4335 8 8 2.8063 -2.3244 -3.2193 9 8 1.7870 -4.1939 -2.6280 10 6 2.0269 -2.8532 0.0467 11 6 1.5173 -2.0705 1.2591 12 7 2.0194 -0.6917 1.1994 13 6 1.6652 0.0505 2.4166 14 6 2.1125 -0.7428 3.6460 15 6 3.5666 -1.1378 3.6709 16 1 3.8466 -2.1744 3.5539 17 6 4.5395 -0.1761 3.8428 18 7 4.2052 1.0945 3.9002 19 14 6.3324 -0.6780 3.9943 20 1 6.9532 -0.7099 2.6457 21 1 6.4188 -2.0261 4.6110 22 1 7.0508 0.3032 4.8467 23 6 1.4484 -0.4083 4.9832 24 6 1.1057 -1.7148 4.2644 25 1 -0.3633 0.5143 0.8898 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0276 0.0005 28 1 1.6636 -0.2164 -2.1400 29 1 3.1298 -0.7092 -1.2577 30 1 2.1620 -4.6207 -3.4106 31 1 1.6413 -3.8721 0.0831 32 1 3.1166 -2.8758 0.0591 33 1 1.8712 -2.5466 2.1735 34 1 0.4274 -2.0608 1.2532 35 1 0.5856 0.1970 2.4517 36 1 2.1633 1.0200 2.4087 37 1 3.2695 1.3504 3.8993 38 1 2.0632 -0.4740 5.8809 39 1 0.6929 0.3774 4.9873 40 1 0.1245 -1.7887 3.7956 41 1 1.4950 -2.6402 4.6888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235339164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = -70.848986 kcal Electronic energy + Delta-G solvation = -21849.406176 eV Core-core repulsion = 18729.630254 eV Total energy + Delta-G solvation = -3119.775922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58985 -39.03638 -36.66789 -36.07004 -32.97831 -31.86270 -31.38433 -27.71216 -26.20480 -24.88995 -23.75048 -22.61222 -21.21759 -21.05367 -19.17992 -18.34780 -17.97862 -16.89479 -16.49263 -15.80344 -15.12402 -14.63677 -13.98228 -13.86376 -13.74686 -13.66637 -13.10621 -12.94136 -12.87227 -12.39755 -12.35007 -11.81802 -11.55872 -11.52123 -11.21915 -10.96964 -10.75927 -10.72333 -10.67574 -10.43631 -10.30863 -10.15312 -10.06261 -9.99158 -9.37593 -8.50716 -8.42056 -8.14344 -7.38527 -6.19888 -3.91393 2.23029 3.06112 3.51258 3.53739 3.68142 4.47277 4.61940 4.72756 4.93935 5.07356 5.14602 5.31539 5.43710 5.48940 5.49728 5.63231 5.69766 5.83000 5.88738 5.94585 5.97456 6.08990 6.14031 6.20665 6.29764 6.37672 6.43345 6.44458 6.47305 6.53704 6.55618 6.69448 6.82088 6.93646 7.23407 7.29349 7.87392 7.90440 7.98205 8.37884 8.53054 9.00126 9.79600 11.17965 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.006592 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.708775 B = 4246.827760 C = 4828.264831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.079 3.921 3 H 0.084 0.916 4 C -0.091 4.091 5 C -0.079 4.079 6 H 0.103 0.897 7 C 0.484 3.516 8 O -0.517 6.517 9 O -0.518 6.518 10 C -0.105 4.105 11 C 0.058 3.942 12 N -0.500 5.500 13 C 0.096 3.904 14 C 0.033 3.967 15 C -0.545 4.545 16 H 0.049 0.951 17 C 0.031 3.969 18 N -0.911 5.911 19 Si 1.065 2.935 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.288 1.288 23 C -0.191 4.191 24 C -0.201 4.201 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.405 0.595 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.022 0.978 35 H 0.004 0.996 36 H 0.076 0.924 37 H 0.271 0.729 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 -6.448 -9.273 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.030 4.030 3 H 0.102 0.898 4 C -0.129 4.129 5 C -0.098 4.098 6 H 0.121 0.879 7 C 0.326 3.674 8 O -0.405 6.405 9 O -0.329 6.329 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.223 5.223 13 C -0.031 4.031 14 C 0.033 3.967 15 C -0.582 4.582 16 H 0.067 0.933 17 C -0.173 4.173 18 N -0.547 5.547 19 Si 0.895 3.105 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.229 4.229 24 C -0.238 4.238 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.263 0.737 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.040 0.960 35 H 0.022 0.978 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.739 -5.505 -9.026 12.029 hybrid contribution -2.331 -0.865 -0.646 2.569 sum -8.069 -6.370 -9.671 14.114 Atomic orbital electron populations 1.22559 0.98695 1.01867 1.01860 1.21677 0.91825 0.98599 0.90916 0.89781 1.21493 1.02726 0.91474 0.97216 1.21227 1.01819 0.95714 0.91084 0.87902 1.23770 0.77373 0.79653 0.86578 1.90703 1.35563 1.68017 1.46201 1.84570 1.71383 1.26721 1.50234 1.21619 1.02623 0.98288 0.91799 1.22112 0.95892 0.90310 0.98627 1.61938 1.58304 1.01078 1.00945 1.21773 0.94378 0.97760 0.89228 1.19143 0.93731 0.95569 0.88285 1.21076 0.88416 0.95247 1.53506 0.93286 1.25557 1.04708 0.93603 0.93470 1.70719 1.20918 1.16438 1.46584 0.83595 0.75369 0.74810 0.76730 1.21525 1.21770 1.21368 1.22903 1.03432 0.97044 0.99523 1.22871 0.99230 0.94248 1.07434 0.92364 0.92654 0.92352 0.91384 0.89925 0.73711 0.91012 0.90337 0.88212 0.95958 0.97795 0.90574 0.91692 0.90017 0.91895 0.91811 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 8.19 37.16 0.30 -2.31 16 2 C 0.08 1.28 2.93 -67.72 -0.20 1.08 16 3 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 4 C -0.09 -1.36 4.20 -26.65 -0.11 -1.47 16 5 C -0.08 -1.07 2.39 -91.65 -0.22 -1.29 16 6 H 0.10 1.23 6.56 -51.92 -0.34 0.89 16 7 C 0.48 6.53 7.63 36.01 0.27 6.81 16 8 O -0.52 -8.44 16.73 -18.75 -0.31 -8.75 16 9 O -0.52 -5.46 13.36 -39.24 -0.52 -5.98 16 10 C -0.11 -1.57 5.31 -26.65 -0.14 -1.71 16 11 C 0.06 1.01 4.45 -3.83 -0.02 0.99 16 12 N -0.50 -9.65 4.39 -226.68 -1.00 -10.64 16 13 C 0.10 2.05 4.61 -3.83 -0.02 2.03 16 14 C 0.03 0.77 0.15 -155.66 -0.02 0.75 16 15 C -0.54 -14.41 8.01 -34.44 -0.28 -14.68 16 16 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 17 C 0.03 0.86 5.44 -17.82 -0.10 0.77 16 18 N -0.91 -26.36 13.44 55.43 0.74 -25.62 16 19 Si 1.07 25.16 29.91 -169.99 -5.08 20.08 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.19 -4.22 9.70 -26.72 -0.26 -4.48 16 24 C -0.20 -4.11 8.13 -26.73 -0.22 -4.33 16 25 H 0.06 0.85 6.47 -51.92 -0.34 0.51 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.76 4.80 -51.93 -0.25 0.51 16 28 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 30 H 0.40 2.50 9.10 45.56 0.41 2.91 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.96 5.29 -51.93 -0.27 1.68 16 34 H 0.02 0.36 6.19 -51.93 -0.32 0.04 16 35 H 0.00 0.08 6.25 -51.93 -0.32 -0.24 16 36 H 0.08 1.82 6.51 -51.93 -0.34 1.48 16 37 H 0.27 7.75 5.69 -40.82 -0.23 7.51 16 38 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -30.44 316.27 -7.84 -38.28 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.43 Total: 5.74 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.00 Total: -17.85 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.25 Total: -36.26 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.84 Total: -14.74 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.44 -7.84 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235339164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.573 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds