Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45960 * 2 1 4 4 C 1.53041 * 109.45983 * 240.02345 * 2 1 3 5 5 C 1.53113 * 109.28254 * 299.16478 * 4 2 1 6 6 H 1.09009 * 109.52268 * 62.24762 * 5 4 2 7 7 C 1.50700 * 109.52517 * 182.43784 * 5 4 2 8 8 O 1.20830 * 119.99838 * 359.97438 * 7 5 4 9 9 O 1.34224 * 120.00030 * 180.02562 * 7 5 4 10 10 C 1.53118 * 109.16129 * 302.34407 * 5 4 2 11 11 C 1.53044 * 109.27604 * 57.65548 * 10 5 4 12 12 N 1.46849 * 109.46506 * 119.97367 * 2 1 3 13 13 C 1.46896 * 111.00229 * 294.17816 * 12 2 1 14 14 C 1.52997 * 109.47201 * 176.44830 * 13 12 2 15 15 C 1.50703 * 115.55135 * 54.39978 * 14 13 12 16 16 H 1.07999 * 119.99322 * 249.72791 * 15 14 13 17 17 C 1.37876 * 120.00190 * 69.72002 * 15 14 13 18 18 N 1.31512 * 120.00178 * 355.69288 * 17 15 14 19 19 Si 1.86798 * 119.99739 * 175.69450 * 17 15 14 20 20 H 1.48498 * 109.47449 * 90.00278 * 19 17 15 21 21 H 1.48502 * 109.47340 * 329.99797 * 19 17 15 22 22 H 1.48503 * 109.46980 * 209.99887 * 19 17 15 23 23 C 1.53008 * 117.51791 * 200.09298 * 14 13 12 24 24 C 1.52999 * 117.50147 * 268.72410 * 14 13 12 25 25 H 1.09007 * 109.46710 * 300.02484 * 1 2 3 26 26 H 1.08996 * 109.47254 * 60.02542 * 1 2 3 27 27 H 1.08994 * 109.47045 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.49949 * 59.10849 * 4 2 1 29 29 H 1.09004 * 109.50010 * 179.21714 * 4 2 1 30 30 H 0.96704 * 117.00236 * 179.97438 * 9 7 5 31 31 H 1.08996 * 109.50126 * 177.59061 * 10 5 4 32 32 H 1.08997 * 109.50552 * 297.67280 * 10 5 4 33 33 H 1.09000 * 109.45975 * 180.80555 * 11 10 5 34 34 H 1.08998 * 109.46532 * 60.83566 * 11 10 5 35 35 H 1.09004 * 109.47516 * 56.44559 * 13 12 2 36 36 H 1.08999 * 109.46731 * 296.44929 * 13 12 2 37 37 H 0.97005 * 119.99900 * 5.32432 * 18 17 15 38 38 H 1.08999 * 117.50093 * 214.97313 * 23 14 13 39 39 H 1.09000 * 117.49709 * 359.97438 * 23 14 13 40 40 H 1.09001 * 117.49646 * 359.97438 * 24 14 13 41 41 H 1.08998 * 117.49975 * 144.97331 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 6 1.5442 -2.1696 -1.2356 6 1 0.4547 -2.1822 -1.2672 7 6 2.0925 -2.9014 -2.4335 8 8 2.8063 -2.3244 -3.2193 9 8 1.7870 -4.1939 -2.6280 10 6 2.0269 -2.8532 0.0467 11 6 1.5173 -2.0705 1.2591 12 7 2.0194 -0.6917 1.1994 13 6 1.6652 0.0505 2.4166 14 6 2.1125 -0.7428 3.6460 15 6 3.5666 -1.1378 3.6709 16 1 3.8466 -2.1744 3.5539 17 6 4.5395 -0.1761 3.8428 18 7 4.2052 1.0945 3.9002 19 14 6.3324 -0.6780 3.9943 20 1 6.9532 -0.7099 2.6457 21 1 6.4188 -2.0261 4.6110 22 1 7.0508 0.3032 4.8467 23 6 1.4484 -0.4083 4.9832 24 6 1.1057 -1.7148 4.2644 25 1 -0.3633 0.5143 0.8898 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0276 0.0005 28 1 1.6636 -0.2164 -2.1400 29 1 3.1298 -0.7092 -1.2577 30 1 2.1620 -4.6207 -3.4106 31 1 1.6413 -3.8721 0.0831 32 1 3.1166 -2.8758 0.0591 33 1 1.8712 -2.5466 2.1735 34 1 0.4274 -2.0608 1.2532 35 1 0.5856 0.1970 2.4517 36 1 2.1633 1.0200 2.4087 37 1 3.2695 1.3504 3.8993 38 1 2.0632 -0.4740 5.8809 39 1 0.6929 0.3774 4.9873 40 1 0.1245 -1.7887 3.7956 41 1 1.4950 -2.6402 4.6888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235339164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = -90.448692 kcal Electronic energy + Delta-G solvation = -21850.256083 eV Core-core repulsion = 18729.630254 eV Total energy + Delta-G solvation = -3120.625829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70906 -40.36407 -38.26904 -37.09434 -34.29556 -33.90538 -32.67362 -29.03461 -27.47348 -26.91271 -25.15194 -23.96618 -22.83721 -22.22187 -21.02055 -19.57330 -19.01784 -18.51174 -17.87213 -17.00478 -16.35514 -16.14529 -15.62029 -15.42692 -15.19129 -15.07388 -14.56239 -14.33065 -14.12394 -13.98261 -13.73351 -13.27738 -12.78466 -12.70874 -12.57462 -12.54426 -12.41942 -12.30703 -12.16322 -11.96581 -11.92037 -11.60793 -11.42287 -11.25535 -11.04787 -10.39455 -10.33291 -10.08722 -8.82054 -8.34626 -6.05466 1.18749 1.56797 1.64153 1.79428 2.12265 2.65850 3.02748 3.37536 3.48123 3.59106 3.77652 3.97768 4.08112 4.21961 4.30684 4.36761 4.44449 4.47042 4.54291 4.56988 4.60147 4.64915 4.78658 4.86042 4.87343 4.93153 5.01572 5.08992 5.10943 5.16611 5.20662 5.32830 5.44028 5.49036 5.56686 5.62437 6.23969 6.38368 6.53681 6.57497 6.89449 7.00495 7.70525 9.03879 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.006592 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.708775 B = 4246.827760 C = 4828.264831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 H 0.065 0.935 4 C -0.085 4.085 5 C -0.074 4.074 6 H 0.131 0.869 7 C 0.492 3.508 8 O -0.551 6.551 9 O -0.507 6.507 10 C -0.098 4.098 11 C 0.062 3.938 12 N -0.527 5.527 13 C 0.112 3.888 14 C 0.007 3.993 15 C -0.542 4.542 16 H 0.036 0.964 17 C -0.016 4.016 18 N -0.940 5.940 19 Si 1.102 2.898 20 H -0.286 1.286 21 H -0.275 1.275 22 H -0.290 1.290 23 C -0.197 4.197 24 C -0.170 4.170 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.426 0.574 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.021 0.979 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 -8.106 -10.433 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.031 4.031 3 H 0.083 0.917 4 C -0.123 4.123 5 C -0.093 4.093 6 H 0.149 0.851 7 C 0.336 3.664 8 O -0.441 6.441 9 O -0.321 6.321 10 C -0.136 4.136 11 C -0.065 4.065 12 N -0.250 5.250 13 C -0.016 4.016 14 C 0.006 3.994 15 C -0.580 4.580 16 H 0.054 0.946 17 C -0.215 4.215 18 N -0.578 5.578 19 Si 0.927 3.073 20 H -0.212 1.212 21 H -0.201 1.201 22 H -0.216 1.216 23 C -0.235 4.235 24 C -0.207 4.207 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.288 0.712 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.572 -7.208 -10.194 14.602 hybrid contribution -1.785 -0.421 -0.302 1.859 sum -9.357 -7.629 -10.496 15.998 Atomic orbital electron populations 1.22448 0.96068 1.02873 1.02553 1.21682 0.93890 0.97488 0.90061 0.91669 1.21382 1.00840 0.92959 0.97130 1.21146 1.03289 0.94377 0.90460 0.85111 1.23599 0.76518 0.80313 0.85952 1.90706 1.37038 1.68973 1.47418 1.84505 1.70985 1.25135 1.51447 1.21526 1.01055 0.99424 0.91589 1.22041 0.96943 0.88992 0.98534 1.61820 1.59931 1.02215 1.01073 1.21430 0.94696 0.95977 0.89496 1.19176 0.92902 0.97813 0.89460 1.21299 0.90519 0.94361 1.51870 0.94576 1.26599 1.07956 0.93487 0.93462 1.70804 1.20497 1.17295 1.49191 0.83106 0.72148 0.75194 0.76803 1.21209 1.20069 1.21572 1.22855 1.03598 0.98904 0.98186 1.22846 0.99479 0.93105 1.05252 0.93316 0.90342 0.91038 0.89775 0.92999 0.71235 0.88501 0.92922 0.90831 0.93906 0.96103 0.94190 0.92527 0.92074 0.90415 0.89022 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.43 8.19 71.98 0.59 -3.84 16 2 C 0.08 2.43 2.93 44.94 0.13 2.56 16 3 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 4 C -0.09 -2.44 4.20 30.65 0.13 -2.32 16 5 C -0.07 -1.80 2.39 -11.46 -0.03 -1.82 16 6 H 0.13 2.51 6.56 -2.38 -0.02 2.50 16 7 C 0.49 12.05 7.63 71.24 0.54 12.60 16 8 O -0.55 -17.16 16.73 21.95 0.37 -16.79 16 9 O -0.51 -8.93 13.36 -51.36 -0.69 -9.61 16 10 C -0.10 -2.71 5.31 30.65 0.16 -2.55 16 11 C 0.06 2.04 4.45 86.33 0.38 2.42 16 12 N -0.53 -20.16 4.39 -871.09 -3.83 -23.99 16 13 C 0.11 4.79 4.61 86.30 0.40 5.18 16 14 C 0.01 0.33 0.15 -52.93 -0.01 0.32 16 15 C -0.54 -29.13 8.01 25.60 0.21 -28.92 16 16 H 0.04 1.98 7.82 -2.91 -0.02 1.96 16 17 C -0.02 -0.89 5.44 84.65 0.46 -0.43 16 18 N -0.94 -56.03 13.44 21.45 0.29 -55.74 16 19 Si 1.10 51.58 29.91 68.60 2.05 53.63 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 C -0.20 -8.66 9.70 30.60 0.30 -8.36 16 24 C -0.17 -6.67 8.13 30.60 0.25 -6.42 16 25 H 0.05 1.29 6.47 -2.38 -0.02 1.28 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.56 4.80 -2.39 -0.01 1.55 16 28 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16 30 H 0.43 3.80 9.10 -74.05 -0.67 3.13 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.80 5.29 -2.39 -0.01 2.78 16 34 H 0.04 1.22 6.19 -2.39 -0.01 1.21 16 35 H 0.02 0.81 6.25 -2.39 -0.01 0.80 16 36 H 0.04 1.98 6.51 -2.39 -0.02 1.96 16 37 H 0.26 15.63 5.69 -92.70 -0.53 15.10 16 38 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -67.02 316.27 2.31 -64.71 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.60 Total: 19.36 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 3.51 Total: -31.57 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.54 Total: -79.73 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.32 Total: -26.41 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -67.02 2.31 -64.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235339164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.735 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds