Wall clock time and date at job start Mon Mar 30 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99340 * 2 1 4 4 N 1.46501 * 109.47191 * 125.00039 * 3 2 1 5 5 C 1.46497 * 119.99723 * 274.76476 * 4 3 2 6 6 C 1.50702 * 109.47114 * 269.11671 * 5 4 3 7 7 H 1.08005 * 119.99836 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00076 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00214 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00164 * 359.97438 * 8 6 5 11 11 H 1.48489 * 109.46939 * 90.00008 * 10 8 6 12 12 H 1.48503 * 109.46959 * 210.00359 * 10 8 6 13 13 H 1.48503 * 109.46881 * 330.00100 * 10 8 6 14 14 C 1.34772 * 120.00173 * 94.76438 * 4 3 2 15 15 O 1.21284 * 120.00233 * 5.05785 * 14 4 3 16 16 C 1.50697 * 120.00194 * 185.06214 * 14 4 3 17 17 H 1.08997 * 109.54599 * 30.82878 * 16 14 4 18 18 C 1.53173 * 109.54709 * 151.10509 * 16 14 4 19 19 C 1.53094 * 109.16489 * 176.84713 * 18 16 14 20 20 O 1.42907 * 109.41321 * 302.39099 * 19 18 16 21 21 C 1.42904 * 114.10033 * 61.15487 * 20 19 18 22 22 C 1.53088 * 109.41595 * 298.84446 * 21 20 19 23 23 H 1.09000 * 109.52342 * 177.51510 * 22 21 20 24 24 C 1.53003 * 109.52250 * 297.69909 * 22 21 20 25 25 H 1.07995 * 119.99213 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00480 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00480 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46990 * 4.99398 * 3 2 1 29 29 H 1.09002 * 109.46676 * 244.99613 * 3 2 1 30 30 H 1.08996 * 109.47306 * 29.11318 * 5 4 3 31 31 H 1.09004 * 109.47114 * 149.11982 * 5 4 3 32 32 H 0.96999 * 119.99836 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.51876 * 296.75304 * 18 16 14 34 34 H 1.09004 * 109.52380 * 56.87625 * 18 16 14 35 35 H 1.09006 * 109.48054 * 182.40865 * 19 18 16 36 36 H 1.08997 * 109.48229 * 62.36785 * 19 18 16 37 37 H 1.09001 * 109.47625 * 58.82622 * 21 20 19 38 38 H 1.08995 * 109.48075 * 178.84973 * 21 20 19 39 39 H 1.09005 * 109.46915 * 55.27773 * 24 22 21 40 40 H 1.09003 * 109.47041 * 175.27352 * 24 22 21 41 41 H 1.08994 * 109.47280 * 295.27727 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3322 1.1314 5 6 2.5296 1.7672 2.4511 6 6 2.7396 3.2528 2.5928 7 1 3.1749 3.8165 1.7809 8 6 2.3761 3.8922 3.7589 9 7 2.5589 5.1888 3.8825 10 14 1.6226 2.9174 5.1630 11 1 2.7001 2.4279 6.0599 12 1 0.6975 3.7894 5.9306 13 1 0.8711 1.7599 4.6146 14 6 4.2764 0.9567 0.9583 15 8 4.6842 0.6845 -0.1511 16 6 5.2041 0.8748 2.1430 17 1 4.6354 0.6082 3.0338 18 6 6.2773 -0.1863 1.8813 19 6 7.2602 -0.2072 3.0548 20 8 7.8334 1.0918 3.2175 21 6 6.8820 2.1168 3.5113 22 6 5.8839 2.2310 2.3561 23 1 5.1315 2.9817 2.5977 24 6 6.6232 2.6385 1.0800 25 1 -0.5398 -0.9353 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6213 1.4027 -0.9314 30 1 1.4692 1.5385 2.5569 31 1 3.0929 1.2452 3.2246 32 1 2.3028 5.6387 4.7028 33 1 5.8062 -1.1643 1.7833 34 1 6.8112 0.0546 0.9620 35 1 8.0505 -0.9307 2.8543 36 1 6.7324 -0.4882 3.9661 37 1 6.3493 1.8661 4.4286 38 1 7.3998 3.0673 3.6398 39 1 7.4283 1.9301 0.8846 40 1 5.9273 2.6380 0.2411 41 1 7.0406 3.6375 1.2053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359399386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:47 Heat of formation + Delta-G solvation = -69.165583 kcal Electronic energy + Delta-G solvation = -22011.379792 eV Core-core repulsion = 18891.676868 eV Total energy + Delta-G solvation = -3119.702924 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18267 -38.28915 -35.64292 -34.08497 -33.17317 -32.23578 -31.46013 -28.24430 -27.15286 -26.04427 -24.48118 -22.77877 -22.40813 -20.14551 -19.18805 -17.89222 -17.04766 -16.49848 -16.16735 -15.57278 -15.49457 -14.95710 -14.67479 -14.28758 -13.91270 -13.80675 -13.18205 -12.84641 -12.73557 -12.45017 -12.15404 -11.96002 -11.65525 -11.49260 -11.23561 -11.21806 -11.01914 -10.88616 -10.81409 -10.65834 -10.31290 -10.06062 -9.83475 -9.65116 -9.46539 -9.22313 -8.79086 -8.71059 -7.81180 -6.27429 -4.28317 2.44637 3.11903 3.21058 3.22835 3.29821 3.89119 4.18203 4.21065 5.01178 5.04629 5.08813 5.16257 5.27583 5.34029 5.43557 5.49840 5.55778 5.72993 5.81281 5.95048 5.97360 5.99561 6.11233 6.13948 6.22595 6.26443 6.28368 6.38440 6.51916 6.59942 6.65831 6.81387 6.81847 6.91920 6.96106 7.32402 7.39016 7.50760 8.08706 8.35876 8.76790 8.90165 9.31814 10.84484 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.009687 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.635491 B = 2889.858029 C = 4233.960288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.140 3.860 4 N -0.588 5.588 5 C 0.207 3.793 6 C -0.538 4.538 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.887 5.887 10 Si 0.866 3.134 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.529 3.471 15 O -0.566 6.566 16 C -0.098 4.098 17 H 0.089 0.911 18 C -0.140 4.140 19 C 0.064 3.936 20 O -0.385 6.385 21 C 0.069 3.931 22 C -0.124 4.124 23 H 0.123 0.877 24 C -0.138 4.138 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.267 0.733 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -9.233 -1.052 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.176 4.176 3 C 0.017 3.983 4 N -0.317 5.317 5 C 0.086 3.914 6 C -0.576 4.576 7 H 0.099 0.901 8 C -0.125 4.125 9 N -0.524 5.524 10 Si 0.692 3.308 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.189 1.189 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.119 4.119 17 H 0.107 0.893 18 C -0.178 4.178 19 C -0.013 4.013 20 O -0.304 6.304 21 C -0.007 4.007 22 C -0.142 4.142 23 H 0.140 0.860 24 C -0.196 4.196 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.107 -9.152 -1.504 9.781 hybrid contribution -0.999 -0.414 1.006 1.477 sum 2.108 -9.566 -0.498 9.808 Atomic orbital electron populations 1.23796 0.95788 1.01644 1.01763 1.23401 0.96111 0.99267 0.98842 1.20442 0.92359 0.94625 0.90849 1.47905 1.08718 1.63689 1.11413 1.19850 0.95605 0.96335 0.79604 1.21333 1.42872 0.90848 1.02575 0.90130 1.24845 0.94894 0.94699 0.98070 1.69886 1.46832 1.08376 1.27327 0.87004 0.80103 0.80641 0.83025 1.19804 1.20841 1.18881 1.20338 0.82170 0.75749 0.89974 1.90582 1.75974 1.51882 1.26217 1.21292 0.95585 0.97371 0.97667 0.89259 1.22093 0.97028 0.98395 1.00306 1.22522 0.96644 0.85417 0.96727 1.87870 1.34082 1.16755 1.91675 1.22621 0.90786 0.91145 0.96166 1.21859 0.98928 0.97031 0.96411 0.85959 1.21750 1.00303 1.00358 0.97145 0.88867 0.88333 0.87910 0.89884 0.89561 0.94869 0.95244 0.92308 0.91503 0.89688 0.89226 0.93548 0.93157 0.88720 0.92626 0.92308 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 14.32 29.01 0.42 -2.21 16 2 C -0.16 -2.46 9.85 -36.02 -0.35 -2.81 16 3 C 0.14 2.53 5.93 -5.19 -0.03 2.50 16 4 N -0.59 -11.81 2.44 -176.43 -0.43 -12.24 16 5 C 0.21 4.45 4.12 -5.19 -0.02 4.43 16 6 C -0.54 -13.43 7.87 -34.44 -0.27 -13.70 16 7 H 0.08 2.27 8.02 -52.48 -0.42 1.85 16 8 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.89 -24.70 13.96 55.43 0.77 -23.92 16 10 Si 0.87 19.19 27.47 -169.99 -4.67 14.52 16 11 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 14 C 0.53 10.59 5.77 -10.99 -0.06 10.52 16 15 O -0.57 -12.26 14.53 5.55 0.08 -12.18 16 16 C -0.10 -1.75 1.74 -91.59 -0.16 -1.90 16 17 H 0.09 1.57 6.00 -51.93 -0.31 1.26 16 18 C -0.14 -2.16 4.70 -26.59 -0.12 -2.29 16 19 C 0.06 0.87 6.84 37.21 0.25 1.13 16 20 O -0.39 -6.11 10.11 -35.23 -0.36 -6.46 16 21 C 0.07 1.12 6.25 37.20 0.23 1.35 16 22 C -0.12 -2.25 2.78 -90.48 -0.25 -2.50 16 23 H 0.12 2.61 5.87 -51.93 -0.30 2.31 16 24 C -0.14 -2.49 8.42 37.16 0.31 -2.18 16 25 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 26 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 27 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.08 1.50 7.76 -51.93 -0.40 1.09 16 29 H 0.09 1.59 7.23 -51.93 -0.38 1.22 16 30 H 0.03 0.72 7.12 -51.93 -0.37 0.35 16 31 H 0.03 0.62 5.20 -51.93 -0.27 0.35 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.43 6.34 -51.93 -0.33 1.10 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.05 0.96 6.25 -51.93 -0.32 0.64 16 40 H 0.06 1.17 6.36 -51.93 -0.33 0.84 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -28.06 320.59 -6.33 -34.38 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.40 Total: 6.81 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.16 Total: -5.73 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.34 Total: -36.17 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.28 Total: -18.64 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.67 Total: 14.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.06 -6.33 -34.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.781 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds