Wall clock time and date at job start Mon Mar 30 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99340 * 2 1 4 4 N 1.46501 * 109.47191 * 125.00039 * 3 2 1 5 5 C 1.46497 * 119.99723 * 274.76476 * 4 3 2 6 6 C 1.50702 * 109.47114 * 269.11671 * 5 4 3 7 7 H 1.08005 * 119.99836 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00076 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00214 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00164 * 359.97438 * 8 6 5 11 11 H 1.48489 * 109.46939 * 90.00008 * 10 8 6 12 12 H 1.48503 * 109.46959 * 210.00359 * 10 8 6 13 13 H 1.48503 * 109.46881 * 330.00100 * 10 8 6 14 14 C 1.34772 * 120.00173 * 94.76438 * 4 3 2 15 15 O 1.21284 * 120.00233 * 5.05785 * 14 4 3 16 16 C 1.50697 * 120.00194 * 185.06214 * 14 4 3 17 17 H 1.08997 * 109.54599 * 30.82878 * 16 14 4 18 18 C 1.53173 * 109.54709 * 151.10509 * 16 14 4 19 19 C 1.53094 * 109.16489 * 176.84713 * 18 16 14 20 20 O 1.42907 * 109.41321 * 302.39099 * 19 18 16 21 21 C 1.42904 * 114.10033 * 61.15487 * 20 19 18 22 22 C 1.53088 * 109.41595 * 298.84446 * 21 20 19 23 23 H 1.09000 * 109.52342 * 177.51510 * 22 21 20 24 24 C 1.53003 * 109.52250 * 297.69909 * 22 21 20 25 25 H 1.07995 * 119.99213 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00480 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00480 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46990 * 4.99398 * 3 2 1 29 29 H 1.09002 * 109.46676 * 244.99613 * 3 2 1 30 30 H 1.08996 * 109.47306 * 29.11318 * 5 4 3 31 31 H 1.09004 * 109.47114 * 149.11982 * 5 4 3 32 32 H 0.96999 * 119.99836 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.51876 * 296.75304 * 18 16 14 34 34 H 1.09004 * 109.52380 * 56.87625 * 18 16 14 35 35 H 1.09006 * 109.48054 * 182.40865 * 19 18 16 36 36 H 1.08997 * 109.48229 * 62.36785 * 19 18 16 37 37 H 1.09001 * 109.47625 * 58.82622 * 21 20 19 38 38 H 1.08995 * 109.48075 * 178.84973 * 21 20 19 39 39 H 1.09005 * 109.46915 * 55.27773 * 24 22 21 40 40 H 1.09003 * 109.47041 * 175.27352 * 24 22 21 41 41 H 1.08994 * 109.47280 * 295.27727 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3322 1.1314 5 6 2.5296 1.7672 2.4511 6 6 2.7396 3.2528 2.5928 7 1 3.1749 3.8165 1.7809 8 6 2.3761 3.8922 3.7589 9 7 2.5589 5.1888 3.8825 10 14 1.6226 2.9174 5.1630 11 1 2.7001 2.4279 6.0599 12 1 0.6975 3.7894 5.9306 13 1 0.8711 1.7599 4.6146 14 6 4.2764 0.9567 0.9583 15 8 4.6842 0.6845 -0.1511 16 6 5.2041 0.8748 2.1430 17 1 4.6354 0.6082 3.0338 18 6 6.2773 -0.1863 1.8813 19 6 7.2602 -0.2072 3.0548 20 8 7.8334 1.0918 3.2175 21 6 6.8820 2.1168 3.5113 22 6 5.8839 2.2310 2.3561 23 1 5.1315 2.9817 2.5977 24 6 6.6232 2.6385 1.0800 25 1 -0.5398 -0.9353 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6213 1.4027 -0.9314 30 1 1.4692 1.5385 2.5569 31 1 3.0929 1.2452 3.2246 32 1 2.3028 5.6387 4.7028 33 1 5.8062 -1.1643 1.7833 34 1 6.8112 0.0546 0.9620 35 1 8.0505 -0.9307 2.8543 36 1 6.7324 -0.4882 3.9661 37 1 6.3493 1.8661 4.4286 38 1 7.3998 3.0673 3.6398 39 1 7.4283 1.9301 0.8846 40 1 5.9273 2.6380 0.2411 41 1 7.0406 3.6375 1.2053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359399386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:46 Heat of formation + Delta-G solvation = -85.790081 kcal Electronic energy + Delta-G solvation = -22012.100685 eV Core-core repulsion = 18891.676868 eV Total energy + Delta-G solvation = -3120.423817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65114 -39.67919 -37.20432 -35.54886 -34.75516 -33.90378 -32.73560 -30.01955 -28.59193 -27.44530 -25.85996 -24.42172 -23.86389 -21.47394 -20.51624 -19.48047 -18.90510 -18.05528 -17.62555 -16.92691 -16.80504 -16.47714 -15.99827 -15.90975 -15.31240 -15.25566 -14.66498 -14.46075 -14.10764 -14.05656 -13.61482 -13.56915 -13.15473 -12.92990 -12.81249 -12.59898 -12.50367 -12.30594 -12.22187 -12.14014 -11.94897 -11.67720 -11.40596 -11.24170 -10.84363 -10.71877 -10.45691 -10.15012 -9.46061 -8.27105 -6.32702 1.25242 1.39232 1.42610 1.50430 1.71103 2.34966 2.39979 2.99752 3.06316 3.58708 3.78135 3.80674 4.01556 4.06600 4.09732 4.21540 4.26729 4.47923 4.53975 4.59227 4.67717 4.73442 4.75604 4.76525 4.80092 4.81721 4.91731 4.92987 5.03441 5.15825 5.19983 5.33069 5.44974 5.46740 5.58377 5.65085 5.87768 6.21131 6.29318 6.60609 6.71795 7.25051 7.35762 8.88365 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.009687 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.635491 B = 2889.858029 C = 4233.960288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.138 3.862 4 N -0.594 5.594 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.032 0.968 8 C 0.027 3.973 9 N -0.937 5.937 10 Si 0.929 3.071 11 H -0.258 1.258 12 H -0.288 1.288 13 H -0.243 1.243 14 C 0.523 3.477 15 O -0.587 6.587 16 C -0.098 4.098 17 H 0.095 0.905 18 C -0.134 4.134 19 C 0.062 3.938 20 O -0.392 6.392 21 C 0.076 3.924 22 C -0.121 4.121 23 H 0.086 0.914 24 C -0.129 4.129 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.268 0.732 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -11.854 0.413 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.015 3.985 4 N -0.323 5.323 5 C 0.096 3.904 6 C -0.568 4.568 7 H 0.051 0.949 8 C -0.173 4.173 9 N -0.576 5.576 10 Si 0.753 3.247 11 H -0.183 1.183 12 H -0.214 1.214 13 H -0.166 1.166 14 C 0.313 3.687 15 O -0.469 6.469 16 C -0.119 4.119 17 H 0.113 0.887 18 C -0.172 4.172 19 C -0.014 4.014 20 O -0.311 6.311 21 C -0.001 4.001 22 C -0.141 4.141 23 H 0.104 0.896 24 C -0.187 4.187 25 H 0.140 0.860 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.708 -11.796 -0.059 12.103 hybrid contribution -0.897 0.463 0.414 1.091 sum 1.811 -11.334 0.355 11.483 Atomic orbital electron populations 1.24053 0.94986 1.03140 0.98106 1.23163 0.96707 0.97718 1.02147 1.20491 0.92036 0.96227 0.89702 1.47999 1.09328 1.63498 1.11481 1.19661 0.96158 0.93871 0.80760 1.21353 1.41765 0.92532 1.01106 0.94938 1.25643 0.95357 0.95460 1.00810 1.70041 1.48781 1.10496 1.28292 0.85980 0.79595 0.79590 0.79583 1.18293 1.21364 1.16632 1.20799 0.82275 0.75166 0.90462 1.90562 1.76209 1.52878 1.27248 1.21354 0.95900 0.97907 0.96734 0.88666 1.22072 0.96521 0.98064 1.00506 1.22742 0.97272 0.84892 0.96509 1.87871 1.34066 1.17506 1.91617 1.22534 0.90423 0.91971 0.95185 1.21744 0.98678 0.96368 0.97264 0.89590 1.21652 0.99795 1.00978 0.96239 0.86046 0.88014 0.87704 0.90589 0.90924 0.94116 0.93648 0.92333 0.90003 0.91339 0.86402 0.91815 0.92338 0.88126 0.91705 0.95107 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 14.32 67.77 0.97 -3.09 16 2 C -0.18 -5.34 9.85 25.64 0.25 -5.08 16 3 C 0.14 5.04 5.93 85.63 0.51 5.55 16 4 N -0.59 -24.03 2.44 -830.50 -2.03 -26.05 16 5 C 0.22 9.16 4.12 85.63 0.35 9.52 16 6 C -0.53 -27.05 7.87 25.60 0.20 -26.85 16 7 H 0.03 1.94 8.02 -2.91 -0.02 1.92 16 8 C 0.03 1.39 5.47 84.65 0.46 1.86 16 9 N -0.94 -53.64 13.96 21.45 0.30 -53.34 16 10 Si 0.93 38.50 27.47 68.60 1.88 40.38 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 14 C 0.52 21.10 5.77 87.66 0.51 21.60 16 15 O -0.59 -25.90 14.53 -3.04 -0.04 -25.94 16 16 C -0.10 -3.41 1.74 -11.42 -0.02 -3.43 16 17 H 0.10 3.17 6.00 -2.39 -0.01 3.16 16 18 C -0.13 -3.86 4.70 30.68 0.14 -3.72 16 19 C 0.06 1.50 6.84 72.01 0.49 1.99 16 20 O -0.39 -11.47 10.11 -148.98 -1.51 -12.98 16 21 C 0.08 2.34 6.25 72.01 0.45 2.79 16 22 C -0.12 -4.45 2.78 -10.70 -0.03 -4.48 16 23 H 0.09 3.82 5.87 -2.39 -0.01 3.80 16 24 C -0.13 -4.78 8.42 71.98 0.61 -4.18 16 25 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 26 H 0.10 2.45 7.84 -2.91 -0.02 2.42 16 27 H 0.10 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.08 2.81 7.76 -2.39 -0.02 2.79 16 29 H 0.07 2.80 7.23 -2.39 -0.02 2.78 16 30 H 0.04 1.68 7.12 -2.39 -0.02 1.66 16 31 H 0.05 1.80 5.20 -2.38 -0.01 1.79 16 32 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 2.22 6.34 -2.38 -0.02 2.20 16 35 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.06 2.24 6.25 -2.38 -0.01 2.23 16 40 H 0.03 1.28 6.36 -2.39 -0.02 1.26 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -62.02 320.59 4.45 -57.57 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.95 Total: 27.86 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.90 Total: -7.51 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -1.73 Total: -79.39 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.55 Total: -38.92 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.88 Total: 40.38 kcal Total: -62.02 4.45 -57.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.220 kcal (2) G-P(sol) polarization free energy of solvation -62.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds