Wall clock time and date at job start Mon Mar 30 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 119.99759 * 2 1 4 4 N 1.46493 * 109.46753 * 124.99834 * 3 2 1 5 5 C 1.46492 * 120.00391 * 264.87196 * 4 3 2 6 6 C 1.50704 * 109.47339 * 275.42051 * 5 4 3 7 7 H 1.07994 * 119.99741 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00252 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99679 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00099 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47448 * 59.99836 * 10 8 6 12 12 H 1.48503 * 109.47125 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47211 * 299.99848 * 10 8 6 14 14 C 1.34785 * 120.00033 * 84.87600 * 4 3 2 15 15 O 1.21285 * 119.99416 * 4.73071 * 14 4 3 16 16 C 1.50697 * 120.00135 * 184.73327 * 14 4 3 17 17 H 1.09000 * 109.54267 * 307.00490 * 16 14 4 18 18 C 1.53167 * 109.54741 * 67.27654 * 16 14 4 19 19 C 1.53085 * 109.16607 * 176.84578 * 18 16 14 20 20 O 1.42904 * 109.41702 * 302.39048 * 19 18 16 21 21 C 1.43033 * 114.12903 * 61.16137 * 20 19 18 22 22 C 1.53096 * 109.34216 * 298.87598 * 21 20 19 23 23 H 1.08993 * 109.52805 * 297.64748 * 22 21 20 24 24 C 1.52997 * 109.52291 * 177.51687 * 22 21 20 25 25 H 1.08002 * 119.99688 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00203 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00147 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47010 * 5.00339 * 3 2 1 29 29 H 1.08997 * 109.46837 * 244.99935 * 3 2 1 30 30 H 1.09004 * 109.47429 * 35.42439 * 5 4 3 31 31 H 1.09004 * 109.47827 * 155.42272 * 5 4 3 32 32 H 0.96997 * 119.99382 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.52237 * 296.75103 * 18 16 14 34 34 H 1.09000 * 109.52712 * 56.93676 * 18 16 14 35 35 H 1.09008 * 109.48016 * 62.37442 * 19 18 16 36 36 H 1.09003 * 109.48205 * 182.40434 * 19 18 16 37 37 H 1.08998 * 109.56871 * 178.89293 * 21 20 19 38 38 H 1.08994 * 109.47063 * 58.81123 * 21 20 19 39 39 H 1.08998 * 109.47393 * 300.13151 * 24 22 21 40 40 H 1.09007 * 109.47109 * 60.12768 * 24 22 21 41 41 H 1.09005 * 109.47386 * 180.12769 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5971 1.9663 2.3909 6 6 2.8622 3.4477 2.3127 7 1 3.2836 3.8741 1.4144 8 6 2.5659 4.2589 3.3875 9 7 2.0523 3.7396 4.4813 10 14 2.8939 6.0952 3.2903 11 1 2.1097 6.6797 2.1728 12 1 2.4920 6.7382 4.5671 13 1 4.3414 6.3277 3.0538 14 6 4.2145 0.7730 1.0136 15 8 4.5755 0.3244 -0.0539 16 6 5.1308 0.7055 2.2081 17 1 5.2380 1.6996 2.6420 18 6 4.5437 -0.2504 3.2510 19 6 5.5183 -0.3734 4.4250 20 8 6.7843 -0.8312 3.9456 21 6 7.4044 0.0467 3.0020 22 6 6.5042 0.1862 1.7715 23 1 6.3904 -0.7856 1.2914 24 6 7.1343 1.1726 0.7862 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.5345 1.7960 2.5648 31 1 3.1727 1.5370 3.2111 32 1 1.8442 4.3102 5.2376 33 1 3.5909 0.1407 3.6079 34 1 4.3902 -1.2311 2.8007 35 1 5.6399 0.6002 4.9000 36 1 5.1252 -1.0854 5.1507 37 1 8.3691 -0.3625 2.7019 38 1 7.5507 1.0257 3.4582 39 1 7.2477 2.1441 1.2672 40 1 8.1125 0.8034 0.4779 41 1 6.4916 1.2730 -0.0885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359399388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:50 Heat of formation + Delta-G solvation = -72.320692 kcal Electronic energy + Delta-G solvation = -21777.232591 eV Core-core repulsion = 18657.392851 eV Total energy + Delta-G solvation = -3119.839740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09501 -38.19967 -35.60566 -34.05728 -33.38109 -32.36220 -31.54976 -27.56418 -27.03301 -25.96643 -24.55392 -22.93947 -21.97112 -20.34244 -19.58513 -18.23433 -16.76232 -16.34295 -15.84612 -15.79384 -15.28255 -14.73731 -14.54510 -14.41974 -14.20875 -13.63019 -13.21269 -13.04001 -12.44689 -12.40082 -12.02965 -11.83945 -11.72315 -11.48360 -11.22226 -11.13832 -10.97031 -10.90341 -10.77458 -10.53736 -10.27538 -10.20785 -10.05631 -9.72094 -9.47948 -9.14041 -8.76931 -8.52255 -7.74572 -6.22904 -4.30015 2.55216 3.20399 3.25824 3.27305 3.38375 3.99278 4.11953 4.29992 4.96272 5.07378 5.11573 5.13174 5.22389 5.37191 5.50990 5.54430 5.60261 5.73849 5.81773 5.85444 5.94946 6.01700 6.03495 6.13407 6.16809 6.21294 6.33140 6.36632 6.38934 6.66381 6.69038 6.79088 6.91496 7.05061 7.17985 7.41465 7.53194 7.71721 8.01506 8.33160 8.74386 8.99905 9.37725 10.83562 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.008429 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.258065 B = 3320.910290 C = 4464.228495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C 0.144 3.856 4 N -0.591 5.591 5 C 0.227 3.773 6 C -0.540 4.540 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.524 3.476 15 O -0.570 6.570 16 C -0.100 4.100 17 H 0.106 0.894 18 C -0.152 4.152 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.066 3.934 22 C -0.103 4.103 23 H 0.081 0.919 24 C -0.149 4.149 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -5.991 -2.095 7.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C 0.021 3.979 4 N -0.320 5.320 5 C 0.108 3.892 6 C -0.578 4.578 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.723 3.277 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.313 3.687 15 O -0.451 6.451 16 C -0.122 4.122 17 H 0.124 0.876 18 C -0.189 4.189 19 C -0.012 4.012 20 O -0.307 6.307 21 C -0.011 4.011 22 C -0.123 4.123 23 H 0.100 0.900 24 C -0.206 4.206 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.126 -6.314 -2.375 7.908 hybrid contribution -0.214 1.424 0.019 1.440 sum 3.912 -4.890 -2.356 6.691 Atomic orbital electron populations 1.23765 0.95777 1.01514 1.02092 1.23393 0.96050 0.99353 0.98525 1.20385 0.92259 0.94671 0.90620 1.48203 1.13330 1.54991 1.15489 1.19712 0.96962 0.92560 0.80003 1.21465 1.43206 0.92376 1.00780 0.92212 1.24923 0.94709 0.98959 0.95120 1.69905 1.42608 1.36033 1.04305 0.86590 0.78899 0.84787 0.77418 1.20131 1.21099 1.20100 1.20360 0.81995 0.77050 0.89342 1.90553 1.75214 1.49970 1.29397 1.21316 0.94095 1.01806 0.94941 0.87607 1.22360 1.00750 0.99604 0.96223 1.22571 0.83221 1.00188 0.95257 1.87884 1.34183 1.48091 1.60582 1.22694 0.95619 0.94080 0.88664 1.21536 0.93829 1.00741 0.96146 0.90041 1.21830 1.00365 0.98160 1.00249 0.88945 0.88459 0.87912 0.89786 0.90463 0.94901 0.92892 0.92435 0.88512 0.91431 0.92575 0.88893 0.89134 0.93098 0.93068 0.93190 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 14.32 29.01 0.42 -2.40 16 2 C -0.15 -2.56 9.81 -36.02 -0.35 -2.92 16 3 C 0.14 2.69 5.86 -5.19 -0.03 2.66 16 4 N -0.59 -12.25 2.45 -176.44 -0.43 -12.68 16 5 C 0.23 5.22 4.65 -5.20 -0.02 5.20 16 6 C -0.54 -13.73 9.38 -34.44 -0.32 -14.05 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 10 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.52 10.68 6.53 -10.98 -0.07 10.61 16 15 O -0.57 -12.41 13.79 5.55 0.08 -12.33 16 16 C -0.10 -1.82 1.26 -91.59 -0.12 -1.93 16 17 H 0.11 2.08 7.67 -51.93 -0.40 1.68 16 18 C -0.15 -2.52 5.05 -26.60 -0.13 -2.65 16 19 C 0.06 0.96 6.84 37.20 0.25 1.21 16 20 O -0.39 -6.07 10.77 -35.23 -0.38 -6.45 16 21 C 0.07 0.94 6.14 37.21 0.23 1.17 16 22 C -0.10 -1.66 2.04 -90.48 -0.18 -1.85 16 23 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 24 C -0.15 -2.31 8.93 37.16 0.33 -1.98 16 25 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.10 1.37 7.84 -52.48 -0.41 0.96 16 27 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.08 1.57 7.68 -51.93 -0.40 1.17 16 29 H 0.08 1.46 7.52 -51.93 -0.39 1.07 16 30 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.05 1.22 3.97 -51.93 -0.21 1.01 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.10 1.72 5.44 -51.93 -0.28 1.44 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.08 1.38 6.06 -51.93 -0.31 1.06 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -27.65 328.87 -6.75 -34.40 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.59 Total: 5.27 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.10 Total: -5.31 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.30 Total: -35.74 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.30 Total: -18.78 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.65 -6.75 -34.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.918 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds