Wall clock time and date at job start Mon Mar 30 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 119.99759 * 2 1 4 4 N 1.46493 * 109.46753 * 124.99834 * 3 2 1 5 5 C 1.46492 * 120.00391 * 264.87196 * 4 3 2 6 6 C 1.50704 * 109.47339 * 275.42051 * 5 4 3 7 7 H 1.07994 * 119.99741 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00252 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99679 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00099 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47448 * 59.99836 * 10 8 6 12 12 H 1.48503 * 109.47125 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47211 * 299.99848 * 10 8 6 14 14 C 1.34785 * 120.00033 * 84.87600 * 4 3 2 15 15 O 1.21285 * 119.99416 * 4.73071 * 14 4 3 16 16 C 1.50697 * 120.00135 * 184.73327 * 14 4 3 17 17 H 1.09000 * 109.54267 * 307.00490 * 16 14 4 18 18 C 1.53167 * 109.54741 * 67.27654 * 16 14 4 19 19 C 1.53085 * 109.16607 * 176.84578 * 18 16 14 20 20 O 1.42904 * 109.41702 * 302.39048 * 19 18 16 21 21 C 1.43033 * 114.12903 * 61.16137 * 20 19 18 22 22 C 1.53096 * 109.34216 * 298.87598 * 21 20 19 23 23 H 1.08993 * 109.52805 * 297.64748 * 22 21 20 24 24 C 1.52997 * 109.52291 * 177.51687 * 22 21 20 25 25 H 1.08002 * 119.99688 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00203 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00147 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47010 * 5.00339 * 3 2 1 29 29 H 1.08997 * 109.46837 * 244.99935 * 3 2 1 30 30 H 1.09004 * 109.47429 * 35.42439 * 5 4 3 31 31 H 1.09004 * 109.47827 * 155.42272 * 5 4 3 32 32 H 0.96997 * 119.99382 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.52237 * 296.75103 * 18 16 14 34 34 H 1.09000 * 109.52712 * 56.93676 * 18 16 14 35 35 H 1.09008 * 109.48016 * 62.37442 * 19 18 16 36 36 H 1.09003 * 109.48205 * 182.40434 * 19 18 16 37 37 H 1.08998 * 109.56871 * 178.89293 * 21 20 19 38 38 H 1.08994 * 109.47063 * 58.81123 * 21 20 19 39 39 H 1.08998 * 109.47393 * 300.13151 * 24 22 21 40 40 H 1.09007 * 109.47109 * 60.12768 * 24 22 21 41 41 H 1.09005 * 109.47386 * 180.12769 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5971 1.9663 2.3909 6 6 2.8622 3.4477 2.3127 7 1 3.2836 3.8741 1.4144 8 6 2.5659 4.2589 3.3875 9 7 2.0523 3.7396 4.4813 10 14 2.8939 6.0952 3.2903 11 1 2.1097 6.6797 2.1728 12 1 2.4920 6.7382 4.5671 13 1 4.3414 6.3277 3.0538 14 6 4.2145 0.7730 1.0136 15 8 4.5755 0.3244 -0.0539 16 6 5.1308 0.7055 2.2081 17 1 5.2380 1.6996 2.6420 18 6 4.5437 -0.2504 3.2510 19 6 5.5183 -0.3734 4.4250 20 8 6.7843 -0.8312 3.9456 21 6 7.4044 0.0467 3.0020 22 6 6.5042 0.1862 1.7715 23 1 6.3904 -0.7856 1.2914 24 6 7.1343 1.1726 0.7862 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.5345 1.7960 2.5648 31 1 3.1727 1.5370 3.2111 32 1 1.8442 4.3102 5.2376 33 1 3.5909 0.1407 3.6079 34 1 4.3902 -1.2311 2.8007 35 1 5.6399 0.6002 4.9000 36 1 5.1252 -1.0854 5.1507 37 1 8.3691 -0.3625 2.7019 38 1 7.5507 1.0257 3.4582 39 1 7.2477 2.1441 1.2672 40 1 8.1125 0.8034 0.4779 41 1 6.4916 1.2730 -0.0885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359399388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:50 Heat of formation + Delta-G solvation = -87.370630 kcal Electronic energy + Delta-G solvation = -21777.885205 eV Core-core repulsion = 18657.392851 eV Total energy + Delta-G solvation = -3120.492355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57919 -39.58926 -37.21188 -35.53551 -34.90923 -34.05000 -32.89859 -29.38216 -28.42386 -27.28242 -26.02308 -24.73387 -23.28270 -21.70439 -20.91995 -19.78740 -18.65356 -17.96034 -17.40497 -17.06429 -16.61937 -16.35794 -16.19019 -15.82032 -15.48502 -14.99553 -14.73777 -14.49764 -14.15453 -13.96192 -13.43091 -13.34036 -13.04801 -12.98430 -12.85084 -12.80679 -12.44344 -12.38715 -12.26534 -12.10022 -11.90611 -11.66415 -11.53859 -11.31235 -10.87256 -10.61032 -10.45660 -10.11825 -9.46608 -8.20909 -6.34872 1.26259 1.40815 1.42112 1.49276 1.74998 2.35269 2.49842 2.95076 3.09019 3.58445 3.69074 3.79783 3.96093 4.04460 4.16366 4.26104 4.29011 4.47622 4.52111 4.58003 4.68092 4.69799 4.73954 4.77894 4.83391 4.89124 4.96606 5.00002 5.04616 5.09647 5.32584 5.34607 5.40464 5.62297 5.64588 5.73285 5.92555 6.06094 6.22813 6.57777 6.80329 7.29378 7.40850 8.84006 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.008429 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.258065 B = 3320.910290 C = 4464.228495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.142 3.858 4 N -0.595 5.595 5 C 0.243 3.757 6 C -0.551 4.551 7 H 0.048 0.952 8 C 0.027 3.973 9 N -0.914 5.914 10 Si 0.951 3.049 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.272 1.272 14 C 0.519 3.481 15 O -0.586 6.586 16 C -0.099 4.099 17 H 0.088 0.912 18 C -0.145 4.145 19 C 0.068 3.932 20 O -0.394 6.394 21 C 0.068 3.932 22 C -0.099 4.099 23 H 0.070 0.930 24 C -0.144 4.144 25 H 0.119 0.881 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.054 0.946 32 H 0.268 0.732 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -6.149 -1.703 7.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.019 3.981 4 N -0.324 5.324 5 C 0.122 3.878 6 C -0.590 4.590 7 H 0.066 0.934 8 C -0.174 4.174 9 N -0.553 5.553 10 Si 0.777 3.223 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.198 1.198 14 C 0.308 3.692 15 O -0.468 6.468 16 C -0.120 4.120 17 H 0.106 0.894 18 C -0.183 4.183 19 C -0.009 4.009 20 O -0.313 6.313 21 C -0.009 4.009 22 C -0.118 4.118 23 H 0.089 0.911 24 C -0.201 4.201 25 H 0.137 0.863 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.627 -6.478 -1.996 8.207 hybrid contribution -0.437 1.459 -0.158 1.531 sum 4.190 -5.019 -2.154 6.884 Atomic orbital electron populations 1.24021 0.94947 1.03042 0.98362 1.23170 0.96741 0.97905 1.01935 1.20442 0.92015 0.95983 0.89611 1.48229 1.14012 1.54893 1.15298 1.19393 0.95670 0.91649 0.81070 1.21641 1.43191 0.93704 1.00424 0.93375 1.25563 0.94474 1.02589 0.94804 1.69983 1.43211 1.37322 1.04767 0.85713 0.78767 0.80358 0.77495 1.19966 1.20481 1.19769 1.20795 0.82009 0.76517 0.89865 1.90537 1.75452 1.50656 1.30197 1.21335 0.95036 1.01360 0.94270 0.89370 1.22287 1.00526 0.98945 0.96526 1.22606 0.82724 1.00883 0.94664 1.87885 1.34166 1.48557 1.60711 1.22803 0.96000 0.94625 0.87440 1.21525 0.93039 1.00037 0.97212 0.91109 1.21765 1.01103 0.98336 0.98922 0.86271 0.87913 0.88393 0.90210 0.91227 0.96769 0.92799 0.92244 0.90006 0.91371 0.92782 0.86649 0.86419 0.92494 0.92904 0.90427 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.56 14.32 67.78 0.97 -3.59 16 2 C -0.18 -5.91 9.81 25.65 0.25 -5.66 16 3 C 0.14 5.45 5.86 85.64 0.50 5.95 16 4 N -0.60 -25.31 2.45 -830.50 -2.04 -27.35 16 5 C 0.24 11.40 4.65 85.64 0.40 11.80 16 6 C -0.55 -28.40 9.38 25.60 0.24 -28.16 16 7 H 0.05 2.55 7.81 -2.91 -0.02 2.52 16 8 C 0.03 1.37 5.46 84.65 0.46 1.84 16 9 N -0.91 -48.83 13.29 21.45 0.28 -48.55 16 10 Si 0.95 41.15 29.54 68.60 2.03 43.18 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 14 C 0.52 21.60 6.53 87.65 0.57 22.17 16 15 O -0.59 -26.05 13.79 -3.04 -0.04 -26.09 16 16 C -0.10 -3.60 1.26 -11.42 -0.01 -3.61 16 17 H 0.09 3.53 7.67 -2.39 -0.02 3.51 16 18 C -0.15 -4.79 5.05 30.68 0.15 -4.63 16 19 C 0.07 1.93 6.84 72.01 0.49 2.42 16 20 O -0.39 -11.49 10.77 -148.98 -1.60 -13.09 16 21 C 0.07 1.79 6.14 72.01 0.44 2.23 16 22 C -0.10 -3.10 2.04 -10.70 -0.02 -3.12 16 23 H 0.07 2.38 7.93 -2.39 -0.02 2.36 16 24 C -0.14 -4.35 8.93 71.98 0.64 -3.71 16 25 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 26 H 0.10 2.72 7.84 -2.91 -0.02 2.70 16 27 H 0.10 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.08 3.05 7.68 -2.39 -0.02 3.03 16 29 H 0.07 2.72 7.52 -2.39 -0.02 2.70 16 30 H 0.01 0.72 8.11 -2.38 -0.02 0.70 16 31 H 0.05 2.54 3.97 -2.38 -0.01 2.53 16 32 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 33 H 0.08 2.95 5.44 -2.39 -0.01 2.93 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.12 2.75 8.14 -2.39 -0.02 2.74 16 37 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.05 1.74 6.06 -2.38 -0.01 1.73 16 Total: -1.00 -58.37 328.87 4.71 -53.66 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.99 Total: 24.32 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 5.09 Total: -6.08 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.75 Total: -75.90 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.65 Total: -39.18 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -58.37 4.71 -53.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.712 kcal (2) G-P(sol) polarization free energy of solvation -58.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds