Wall clock time and date at job start Mon Mar 30 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99980 * 2 1 4 4 N 1.46497 * 109.47010 * 233.82572 * 3 2 1 5 5 C 1.46500 * 119.99970 * 265.97257 * 4 3 2 6 6 C 1.50708 * 109.47161 * 83.22516 * 5 4 3 7 7 H 1.08005 * 119.99869 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99912 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99837 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00342 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47070 * 90.00392 * 10 8 6 12 12 H 1.48498 * 109.47014 * 210.00575 * 10 8 6 13 13 H 1.48507 * 109.46865 * 330.00227 * 10 8 6 14 14 C 1.34774 * 119.99971 * 85.97266 * 4 3 2 15 15 O 1.21282 * 120.00183 * 355.21969 * 14 4 3 16 16 C 1.50698 * 119.99990 * 175.21583 * 14 4 3 17 17 H 1.08993 * 109.54473 * 53.17918 * 16 14 4 18 18 C 1.53182 * 109.54565 * 293.00304 * 16 14 4 19 19 C 1.53086 * 109.16672 * 183.15312 * 18 16 14 20 20 O 1.42911 * 109.41490 * 57.60635 * 19 18 16 21 21 C 1.42898 * 114.09744 * 298.84426 * 20 19 18 22 22 C 1.53093 * 109.41449 * 61.15653 * 21 20 19 23 23 H 1.09003 * 109.52423 * 62.30176 * 22 21 20 24 24 C 1.53000 * 109.52062 * 182.48406 * 22 21 20 25 25 H 1.08001 * 120.00282 * 354.86294 * 1 2 3 26 26 H 1.07999 * 120.00285 * 174.58500 * 1 2 3 27 27 H 1.08001 * 119.99660 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.46985 * 353.82882 * 3 2 1 29 29 H 1.08996 * 109.46837 * 113.82490 * 3 2 1 30 30 H 1.08997 * 109.46974 * 203.21935 * 5 4 3 31 31 H 1.09000 * 109.47037 * 323.22425 * 5 4 3 32 32 H 0.97000 * 119.99899 * 179.97438 * 9 8 6 33 33 H 1.09010 * 109.52088 * 303.06019 * 18 16 14 34 34 H 1.09000 * 109.52047 * 63.18413 * 18 16 14 35 35 H 1.08995 * 109.48416 * 177.58712 * 19 18 16 36 36 H 1.09001 * 109.48291 * 297.61756 * 19 18 16 37 37 H 1.09003 * 109.48398 * 181.14019 * 21 20 19 38 38 H 1.08999 * 109.48157 * 301.16360 * 21 20 19 39 39 H 1.09006 * 109.47440 * 179.68590 * 24 22 21 40 40 H 1.09000 * 109.47415 * 299.68849 * 24 22 21 41 41 H 1.09007 * 109.47507 * 59.68636 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0136 1.3204 -1.1149 5 6 4.4003 0.8987 -0.9014 6 6 4.4875 -0.6034 -0.9870 7 1 3.5987 -1.1857 -1.1806 8 6 5.7016 -1.2343 -0.8171 9 7 5.7775 -2.5452 -0.8913 10 14 7.2386 -0.2272 -0.4815 11 1 7.4057 -0.0522 0.9836 12 1 8.4229 -0.9324 -1.0340 13 1 7.1092 1.1038 -1.1275 14 6 2.6121 1.7223 -2.3371 15 8 1.4455 1.9884 -2.5350 16 6 3.6127 1.8412 -3.4577 17 1 4.1599 0.9040 -3.5588 18 6 4.5938 2.9767 -3.1504 19 6 5.5568 3.1416 -4.3289 20 8 4.8102 3.3992 -5.5200 21 6 3.9104 2.3502 -5.8830 22 6 2.8812 2.1535 -4.7667 23 1 2.2943 3.0643 -4.6478 24 6 1.9546 0.9899 -5.1249 25 1 -0.5400 0.9315 0.0837 26 1 -0.5400 -0.9311 -0.0883 27 1 1.8499 -0.9353 0.0004 28 1 1.3603 2.1306 -0.1105 29 1 2.6046 1.4122 0.9401 30 1 5.0372 1.3437 -1.6659 31 1 4.7321 1.2264 0.0838 32 1 6.6318 -2.9890 -0.7721 33 1 4.0415 3.9042 -2.9987 34 1 5.1576 2.7369 -2.2489 35 1 6.2300 3.9764 -4.1343 36 1 6.1376 2.2278 -4.4544 37 1 3.3976 2.6147 -6.8077 38 1 4.4695 1.4260 -6.0290 39 1 1.2257 0.8470 -4.3271 40 1 1.4346 1.2129 -6.0565 41 1 2.5434 0.0806 -5.2462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359399390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:52 Heat of formation + Delta-G solvation = -65.593717 kcal Electronic energy + Delta-G solvation = -21921.541207 eV Core-core repulsion = 18801.993170 eV Total energy + Delta-G solvation = -3119.548037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20947 -38.30982 -35.67007 -34.13372 -33.26567 -32.42669 -31.62749 -28.13908 -27.15766 -26.04978 -24.61465 -22.65754 -22.02185 -20.37627 -19.37380 -18.46950 -17.01588 -16.64300 -15.94610 -15.90614 -15.23145 -14.85520 -14.47361 -14.37411 -13.97545 -13.79722 -13.37926 -12.89293 -12.70304 -12.57703 -12.16932 -12.05397 -11.85294 -11.80231 -11.33296 -11.20030 -10.89941 -10.87037 -10.73120 -10.51373 -10.32977 -10.24929 -10.11331 -9.63036 -9.52903 -9.07013 -8.79142 -8.64774 -7.81345 -6.26011 -4.27295 2.72400 3.11959 3.17781 3.22051 3.29982 3.88528 4.02464 4.20904 4.86506 4.99190 5.00803 5.05995 5.11918 5.40650 5.45794 5.50222 5.64345 5.66026 5.78034 5.80919 5.85717 5.91583 5.95731 6.02424 6.05719 6.12165 6.25555 6.28404 6.37427 6.48841 6.62533 6.65121 6.69917 7.17487 7.21189 7.31348 7.35367 7.41142 8.08378 8.38110 8.78704 8.89608 9.33072 10.86455 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.009485 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.487924 B = 2951.441760 C = 4328.185740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C 0.151 3.849 4 N -0.588 5.588 5 C 0.196 3.804 6 C -0.539 4.539 7 H 0.081 0.919 8 C 0.076 3.924 9 N -0.890 5.890 10 Si 0.869 3.131 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.527 3.473 15 O -0.559 6.559 16 C -0.104 4.104 17 H 0.107 0.893 18 C -0.154 4.154 19 C 0.063 3.937 20 O -0.386 6.386 21 C 0.065 3.935 22 C -0.102 4.102 23 H 0.082 0.918 24 C -0.149 4.149 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 9.075 -3.991 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.167 4.167 3 C 0.028 3.972 4 N -0.317 5.317 5 C 0.075 3.925 6 C -0.578 4.578 7 H 0.099 0.901 8 C -0.128 4.128 9 N -0.528 5.528 10 Si 0.696 3.304 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.315 3.685 15 O -0.439 6.439 16 C -0.125 4.125 17 H 0.125 0.875 18 C -0.192 4.192 19 C -0.014 4.014 20 O -0.305 6.305 21 C -0.012 4.012 22 C -0.121 4.121 23 H 0.100 0.900 24 C -0.207 4.207 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.137 0.863 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.414 9.226 -4.167 10.407 hybrid contribution 0.977 -0.215 0.560 1.146 sum -1.437 9.012 -3.607 9.812 Atomic orbital electron populations 1.23647 0.95915 1.01004 1.02973 1.23495 0.95872 0.99868 0.97491 1.20342 0.91839 0.95258 0.89783 1.47894 1.12237 1.63338 1.08254 1.20127 0.78128 0.96911 0.97287 1.21410 0.96410 0.89570 1.50373 0.90142 1.24884 0.98640 0.94768 0.94484 1.69888 1.25945 1.07935 1.49007 0.86963 0.83409 0.80795 0.79266 1.19931 1.20854 1.18843 1.20286 0.88684 0.76161 0.83334 1.90575 1.18831 1.52133 1.82391 1.21367 0.96383 1.01065 0.93681 0.87494 1.22394 0.98137 0.98554 1.00097 1.22571 0.93066 1.01613 0.84144 1.87875 1.56010 1.43587 1.43042 1.22704 0.90585 0.90746 0.97122 1.21525 0.96561 1.00550 0.93482 0.89955 1.21832 0.99890 0.97015 1.01925 0.89259 0.89100 0.86256 0.91019 0.90288 0.93455 0.95603 0.92360 0.91009 0.89127 0.88863 0.92700 0.88967 0.92981 0.90419 0.93122 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.27 14.31 29.02 0.42 -2.85 16 2 C -0.15 -2.77 9.65 -36.02 -0.35 -3.11 16 3 C 0.15 2.74 5.80 -5.19 -0.03 2.71 16 4 N -0.59 -11.72 2.45 -176.44 -0.43 -12.16 16 5 C 0.20 4.16 3.76 -5.19 -0.02 4.14 16 6 C -0.54 -13.71 9.76 -34.44 -0.34 -14.05 16 7 H 0.08 2.30 6.99 -52.48 -0.37 1.93 16 8 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.89 -25.30 13.96 55.43 0.77 -24.53 16 10 Si 0.87 19.14 27.47 -169.99 -4.67 14.47 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.26 -5.32 6.54 56.52 0.37 -4.95 16 14 C 0.53 10.44 6.55 -10.99 -0.07 10.37 16 15 O -0.56 -11.96 13.85 5.56 0.08 -11.88 16 16 C -0.10 -1.80 1.26 -91.59 -0.12 -1.92 16 17 H 0.11 2.02 7.65 -51.93 -0.40 1.63 16 18 C -0.15 -2.36 5.04 -26.59 -0.13 -2.50 16 19 C 0.06 0.87 6.84 37.20 0.25 1.12 16 20 O -0.39 -5.72 10.77 -35.23 -0.38 -6.10 16 21 C 0.07 0.89 6.13 37.21 0.23 1.12 16 22 C -0.10 -1.59 2.04 -90.48 -0.18 -1.78 16 23 H 0.08 1.36 7.94 -51.93 -0.41 0.95 16 24 C -0.15 -2.32 8.93 37.16 0.33 -1.99 16 25 H 0.09 1.38 7.86 -52.49 -0.41 0.96 16 26 H 0.09 1.39 8.06 -52.49 -0.42 0.96 16 27 H 0.12 2.50 7.00 -52.49 -0.37 2.14 16 28 H 0.07 1.25 7.29 -51.93 -0.38 0.88 16 29 H 0.08 1.32 7.92 -51.93 -0.41 0.90 16 30 H 0.05 0.96 3.02 -51.93 -0.16 0.81 16 31 H 0.03 0.54 7.40 -51.93 -0.38 0.15 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.09 1.42 5.45 -51.93 -0.28 1.14 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.41 6.05 -51.93 -0.31 1.10 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -28.79 322.70 -6.31 -35.10 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.43 Total: 7.09 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -0.11 Total: -6.85 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.34 Total: -36.68 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.30 Total: -17.99 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.67 Total: 14.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.79 -6.31 -35.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.495 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds