Wall clock time and date at job start Mon Mar 30 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99980 * 2 1 4 4 N 1.46497 * 109.47010 * 233.82572 * 3 2 1 5 5 C 1.46500 * 119.99970 * 265.97257 * 4 3 2 6 6 C 1.50708 * 109.47161 * 83.22516 * 5 4 3 7 7 H 1.08005 * 119.99869 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99912 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99837 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00342 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47070 * 90.00392 * 10 8 6 12 12 H 1.48498 * 109.47014 * 210.00575 * 10 8 6 13 13 H 1.48507 * 109.46865 * 330.00227 * 10 8 6 14 14 C 1.34774 * 119.99971 * 85.97266 * 4 3 2 15 15 O 1.21282 * 120.00183 * 355.21969 * 14 4 3 16 16 C 1.50698 * 119.99990 * 175.21583 * 14 4 3 17 17 H 1.08993 * 109.54473 * 53.17918 * 16 14 4 18 18 C 1.53182 * 109.54565 * 293.00304 * 16 14 4 19 19 C 1.53086 * 109.16672 * 183.15312 * 18 16 14 20 20 O 1.42911 * 109.41490 * 57.60635 * 19 18 16 21 21 C 1.42898 * 114.09744 * 298.84426 * 20 19 18 22 22 C 1.53093 * 109.41449 * 61.15653 * 21 20 19 23 23 H 1.09003 * 109.52423 * 62.30176 * 22 21 20 24 24 C 1.53000 * 109.52062 * 182.48406 * 22 21 20 25 25 H 1.08001 * 120.00282 * 354.86294 * 1 2 3 26 26 H 1.07999 * 120.00285 * 174.58500 * 1 2 3 27 27 H 1.08001 * 119.99660 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.46985 * 353.82882 * 3 2 1 29 29 H 1.08996 * 109.46837 * 113.82490 * 3 2 1 30 30 H 1.08997 * 109.46974 * 203.21935 * 5 4 3 31 31 H 1.09000 * 109.47037 * 323.22425 * 5 4 3 32 32 H 0.97000 * 119.99899 * 179.97438 * 9 8 6 33 33 H 1.09010 * 109.52088 * 303.06019 * 18 16 14 34 34 H 1.09000 * 109.52047 * 63.18413 * 18 16 14 35 35 H 1.08995 * 109.48416 * 177.58712 * 19 18 16 36 36 H 1.09001 * 109.48291 * 297.61756 * 19 18 16 37 37 H 1.09003 * 109.48398 * 181.14019 * 21 20 19 38 38 H 1.08999 * 109.48157 * 301.16360 * 21 20 19 39 39 H 1.09006 * 109.47440 * 179.68590 * 24 22 21 40 40 H 1.09000 * 109.47415 * 299.68849 * 24 22 21 41 41 H 1.09007 * 109.47507 * 59.68636 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0136 1.3204 -1.1149 5 6 4.4003 0.8987 -0.9014 6 6 4.4875 -0.6034 -0.9870 7 1 3.5987 -1.1857 -1.1806 8 6 5.7016 -1.2343 -0.8171 9 7 5.7775 -2.5452 -0.8913 10 14 7.2386 -0.2272 -0.4815 11 1 7.4057 -0.0522 0.9836 12 1 8.4229 -0.9324 -1.0340 13 1 7.1092 1.1038 -1.1275 14 6 2.6121 1.7223 -2.3371 15 8 1.4455 1.9884 -2.5350 16 6 3.6127 1.8412 -3.4577 17 1 4.1599 0.9040 -3.5588 18 6 4.5938 2.9767 -3.1504 19 6 5.5568 3.1416 -4.3289 20 8 4.8102 3.3992 -5.5200 21 6 3.9104 2.3502 -5.8830 22 6 2.8812 2.1535 -4.7667 23 1 2.2943 3.0643 -4.6478 24 6 1.9546 0.9899 -5.1249 25 1 -0.5400 0.9315 0.0837 26 1 -0.5400 -0.9311 -0.0883 27 1 1.8499 -0.9353 0.0004 28 1 1.3603 2.1306 -0.1105 29 1 2.6046 1.4122 0.9401 30 1 5.0372 1.3437 -1.6659 31 1 4.7321 1.2264 0.0838 32 1 6.6318 -2.9890 -0.7721 33 1 4.0415 3.9042 -2.9987 34 1 5.1576 2.7369 -2.2489 35 1 6.2300 3.9764 -4.1343 36 1 6.1376 2.2278 -4.4544 37 1 3.3976 2.6147 -6.8077 38 1 4.4695 1.4260 -6.0290 39 1 1.2257 0.8470 -4.3271 40 1 1.4346 1.2129 -6.0565 41 1 2.5434 0.0806 -5.2462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359399390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:52 Heat of formation + Delta-G solvation = -83.052465 kcal Electronic energy + Delta-G solvation = -21922.298275 eV Core-core repulsion = 18801.993170 eV Total energy + Delta-G solvation = -3120.305105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61510 -39.61716 -37.24606 -35.52322 -34.82179 -34.17024 -32.91301 -29.96938 -28.46999 -27.31961 -25.98055 -24.40782 -23.27569 -21.70399 -20.81235 -19.98141 -18.94067 -18.15324 -17.38696 -17.09051 -16.57088 -16.29952 -16.11459 -15.67276 -15.36946 -15.09629 -14.93153 -14.42106 -14.31016 -14.07684 -13.71381 -13.46539 -13.28180 -13.02401 -12.81339 -12.63757 -12.44773 -12.37182 -12.12918 -11.96339 -11.84402 -11.57165 -11.53658 -11.33627 -10.89501 -10.76475 -10.43804 -10.10368 -9.46055 -8.27875 -6.34641 1.26984 1.40830 1.41042 1.50770 1.74972 2.35272 2.39564 2.95293 3.05893 3.56019 3.67944 3.77085 3.94691 4.05818 4.16623 4.27994 4.30448 4.45548 4.49345 4.53991 4.61636 4.67704 4.69008 4.69875 4.75962 4.80379 4.86612 4.93783 5.04357 5.08172 5.16388 5.32693 5.38520 5.47227 5.67157 5.71847 5.86115 6.20564 6.22911 6.63792 6.72409 7.24779 7.36251 8.88207 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.009485 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.487924 B = 2951.441760 C = 4328.185740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.148 3.852 4 N -0.593 5.593 5 C 0.204 3.796 6 C -0.537 4.537 7 H 0.031 0.969 8 C 0.017 3.983 9 N -0.945 5.945 10 Si 0.936 3.064 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.227 1.227 14 C 0.520 3.480 15 O -0.578 6.578 16 C -0.105 4.105 17 H 0.088 0.912 18 C -0.149 4.149 19 C 0.062 3.938 20 O -0.393 6.393 21 C 0.068 3.932 22 C -0.098 4.098 23 H 0.074 0.926 24 C -0.145 4.145 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.267 0.733 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 11.633 -4.509 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.026 3.974 4 N -0.322 5.322 5 C 0.082 3.918 6 C -0.575 4.575 7 H 0.050 0.950 8 C -0.182 4.182 9 N -0.585 5.585 10 Si 0.758 3.242 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.149 1.149 14 C 0.310 3.690 15 O -0.459 6.459 16 C -0.126 4.126 17 H 0.106 0.894 18 C -0.187 4.187 19 C -0.015 4.015 20 O -0.312 6.312 21 C -0.008 4.008 22 C -0.117 4.117 23 H 0.093 0.907 24 C -0.202 4.202 25 H 0.126 0.874 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.134 0.866 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.502 11.808 -4.684 12.792 hybrid contribution 0.508 -1.103 0.724 1.414 sum -0.994 10.705 -3.960 11.457 Atomic orbital electron populations 1.23863 0.95133 1.02397 0.99767 1.23318 0.96681 0.98894 1.00607 1.20472 0.91967 0.95049 0.89930 1.47971 1.12129 1.63144 1.08973 1.20007 0.79334 0.93876 0.98544 1.21562 0.94758 0.91764 1.49424 0.95020 1.25805 1.02445 0.95737 0.94187 1.70064 1.26890 1.10322 1.51183 0.85891 0.78162 0.80581 0.79561 1.19289 1.21288 1.14937 1.20788 0.88962 0.75555 0.83713 1.90554 1.19704 1.52977 1.82669 1.21408 0.96325 1.01136 0.93715 0.89408 1.22377 0.97885 0.97569 1.00849 1.22704 0.92762 1.02929 0.83060 1.87877 1.56078 1.43919 1.43300 1.22757 0.90084 0.90967 0.97030 1.21507 0.96876 0.99863 0.93422 0.90740 1.21766 0.99339 0.97070 1.02058 0.87377 0.87982 0.89717 0.90022 0.88898 0.91659 0.94048 0.92445 0.90615 0.89254 0.86169 0.92578 0.86609 0.92632 0.93503 0.90486 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.67 14.31 67.78 0.97 -4.70 16 2 C -0.18 -6.72 9.65 25.65 0.25 -6.48 16 3 C 0.15 5.35 5.80 85.63 0.50 5.84 16 4 N -0.59 -23.52 2.45 -830.51 -2.04 -25.56 16 5 C 0.20 8.44 3.76 85.64 0.32 8.77 16 6 C -0.54 -27.98 9.76 25.60 0.25 -27.73 16 7 H 0.03 1.92 6.99 -2.91 -0.02 1.90 16 8 C 0.02 0.88 5.47 84.65 0.46 1.35 16 9 N -0.94 -55.60 13.96 21.45 0.30 -55.30 16 10 Si 0.94 38.47 27.47 68.60 1.88 40.35 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.23 -7.91 6.54 99.48 0.65 -7.26 16 14 C 0.52 20.50 6.55 87.66 0.57 21.08 16 15 O -0.58 -24.67 13.85 -3.04 -0.04 -24.71 16 16 C -0.10 -3.54 1.26 -11.42 -0.01 -3.56 16 17 H 0.09 3.32 7.65 -2.39 -0.02 3.30 16 18 C -0.15 -4.20 5.04 30.68 0.15 -4.05 16 19 C 0.06 1.51 6.84 72.01 0.49 2.00 16 20 O -0.39 -10.42 10.77 -148.98 -1.60 -12.03 16 21 C 0.07 1.70 6.13 72.01 0.44 2.14 16 22 C -0.10 -2.92 2.04 -10.70 -0.02 -2.94 16 23 H 0.07 2.37 7.94 -2.39 -0.02 2.35 16 24 C -0.15 -4.44 8.93 71.98 0.64 -3.80 16 25 H 0.11 3.14 7.86 -2.91 -0.02 3.11 16 26 H 0.10 3.05 8.06 -2.91 -0.02 3.03 16 27 H 0.08 3.83 7.00 -2.91 -0.02 3.80 16 28 H 0.08 2.77 7.29 -2.39 -0.02 2.75 16 29 H 0.09 3.02 7.92 -2.39 -0.02 3.00 16 30 H 0.07 2.51 3.02 -2.39 -0.01 2.50 16 31 H 0.04 1.61 7.40 -2.39 -0.02 1.60 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.09 2.52 5.45 -2.39 -0.01 2.51 16 35 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.72 6.05 -2.38 -0.01 1.71 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -64.15 322.70 4.46 -59.69 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.95 Total: 29.64 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.02 Total: -12.08 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.74 Total: -80.86 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.65 Total: -36.74 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.88 Total: 40.35 kcal Total: -64.15 4.46 -59.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.362 kcal (2) G-P(sol) polarization free energy of solvation -64.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds