Wall clock time and date at job start Mon Mar 30 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.52036 * 2 1 4 4 C 1.53089 * 109.52112 * 239.86863 * 2 1 3 5 5 O 1.43041 * 109.33910 * 182.48834 * 4 2 1 6 6 C 1.42902 * 114.13410 * 61.11996 * 5 4 2 7 7 C 1.53093 * 109.41440 * 298.83816 * 6 5 4 8 8 C 1.53172 * 109.16071 * 57.61074 * 7 6 5 9 9 H 1.09004 * 109.62077 * 62.93255 * 8 7 6 10 10 C 1.50700 * 109.54143 * 183.14998 * 8 7 6 11 11 O 1.21289 * 120.00037 * 84.26974 * 10 8 7 12 12 N 1.34778 * 120.00021 * 264.26647 * 10 8 7 13 13 C 1.47425 * 125.64728 * 184.71916 * 12 10 8 14 14 C 1.55131 * 104.72366 * 155.81738 * 13 12 10 15 15 C 1.55159 * 101.48194 * 37.29762 * 14 13 12 16 16 H 1.08997 * 110.71940 * 82.69386 * 15 14 13 17 17 C 1.50701 * 110.71454 * 205.96980 * 15 14 13 18 18 H 1.08001 * 119.99672 * 113.52093 * 17 15 14 19 19 C 1.37872 * 120.00149 * 293.51661 * 17 15 14 20 20 N 1.31517 * 120.00087 * 180.02562 * 19 17 15 21 21 Si 1.86796 * 120.00049 * 0.02562 * 19 17 15 22 22 H 1.48510 * 109.47285 * 89.99385 * 21 19 17 23 23 H 1.48495 * 109.47392 * 209.99641 * 21 19 17 24 24 H 1.48500 * 109.47194 * 330.00121 * 21 19 17 25 25 C 1.47013 * 125.64868 * 5.03033 * 12 10 8 26 26 H 1.08998 * 109.47279 * 300.00409 * 1 2 3 27 27 H 1.09006 * 109.46983 * 60.00508 * 1 2 3 28 28 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.48330 * 302.40218 * 4 2 1 30 30 H 1.08993 * 109.48154 * 62.44316 * 4 2 1 31 31 H 1.08998 * 109.47843 * 178.85607 * 6 5 4 32 32 H 1.08994 * 109.47938 * 58.82311 * 6 5 4 33 33 H 1.08996 * 109.52073 * 297.69961 * 7 6 5 34 34 H 1.08997 * 109.51930 * 177.51370 * 7 6 5 35 35 H 1.09006 * 110.36802 * 274.74926 * 13 12 10 36 36 H 1.09003 * 110.36869 * 37.07038 * 13 12 10 37 37 H 1.09000 * 111.18959 * 279.19210 * 14 13 12 38 38 H 1.08996 * 110.93893 * 155.28685 * 14 13 12 39 39 H 0.97001 * 119.99973 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.88072 * 300.43747 * 25 12 10 41 41 H 1.08998 * 109.88752 * 61.44851 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2479 5 8 3.4708 -0.7729 -1.2149 6 6 4.0057 -1.4795 -0.0939 7 6 3.5716 -0.7850 1.1996 8 6 2.0418 -0.7246 1.2488 9 1 1.6362 -1.7360 1.2755 10 6 1.6064 0.0258 2.4810 11 8 1.5496 1.2373 2.4649 12 7 1.2800 -0.6492 3.6009 13 6 0.7468 -0.0526 4.8392 14 6 -0.0211 -1.2074 5.5343 15 6 0.8893 -2.4218 5.2121 16 1 1.7179 -2.4805 5.9177 17 6 0.0926 -3.7010 5.2151 18 1 -0.0472 -4.2522 4.2970 19 6 -0.4578 -4.1676 6.3900 20 7 -1.1527 -5.2842 6.3927 21 14 -0.2166 -3.2138 7.9778 22 1 -1.3211 -2.2343 8.1397 23 1 -0.2178 -4.1554 9.1260 24 1 1.0809 -2.4930 7.9301 25 6 1.4028 -2.1017 3.7923 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6441 -1.7390 -1.2679 30 1 1.7150 -0.1882 -2.1389 31 1 5.0939 -1.4873 -0.1547 32 1 3.6338 -2.5040 -0.0989 33 1 3.9771 0.2264 1.2237 34 1 3.9417 -1.3474 2.0568 35 1 1.5615 0.2993 5.4721 36 1 0.0673 0.7665 4.6036 37 1 -1.0133 -1.3372 5.1019 38 1 -0.0846 -1.0412 6.6097 39 1 -1.5402 -5.6122 7.2192 40 1 0.7977 -2.6255 3.0524 41 1 2.4464 -2.4014 3.6968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397583650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:14 Heat of formation + Delta-G solvation = -95.727508 kcal Electronic energy + Delta-G solvation = -21465.847717 eV Core-core repulsion = 18344.992981 eV Total energy + Delta-G solvation = -3120.854736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42058 -38.74679 -36.99641 -34.34135 -33.03033 -32.31139 -30.85779 -28.85944 -27.04125 -25.91766 -24.93461 -22.43265 -22.37408 -20.37021 -19.97217 -18.70096 -17.32331 -16.83004 -16.24768 -16.06310 -15.48206 -14.82142 -14.71905 -14.48824 -14.33663 -13.71484 -13.38998 -12.98340 -12.78612 -12.67878 -12.35579 -12.15884 -12.09404 -11.91729 -11.68069 -11.42354 -11.03806 -11.01577 -10.86741 -10.66912 -10.48481 -10.27164 -10.03909 -9.83775 -9.74416 -9.26173 -9.22194 -8.69720 -8.19466 -6.21720 -4.23233 2.88339 3.18539 3.27929 3.28398 3.36104 3.76538 4.28855 4.53110 4.65325 4.67802 4.81772 5.05811 5.12163 5.15124 5.33248 5.34797 5.45390 5.49090 5.52599 5.55761 5.59640 5.69293 5.73347 5.76636 5.90315 5.97108 5.99419 6.01827 6.19128 6.24953 6.30073 6.46959 6.62907 6.71247 6.76479 7.06131 7.24541 7.54506 7.95273 8.32646 8.47829 8.79262 9.39180 10.90792 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.005044 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.369724 B = 5550.314379 C = 5825.116292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 H 0.090 0.910 4 C 0.067 3.933 5 O -0.384 6.384 6 C 0.064 3.936 7 C -0.143 4.143 8 C -0.102 4.102 9 H 0.093 0.907 10 C 0.534 3.466 11 O -0.556 6.556 12 N -0.612 5.612 13 C 0.105 3.895 14 C -0.140 4.140 15 C 0.008 3.992 16 H 0.043 0.957 17 C -0.515 4.515 18 H 0.077 0.923 19 C 0.076 3.924 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.291 1.291 24 H -0.264 1.264 25 C 0.112 3.888 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.266 0.734 40 H 0.069 0.931 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 7.398 -10.477 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 H 0.108 0.892 4 C -0.010 4.010 5 O -0.303 6.303 6 C -0.013 4.013 7 C -0.182 4.182 8 C -0.124 4.124 9 H 0.111 0.889 10 C 0.322 3.678 11 O -0.435 6.435 12 N -0.345 5.345 13 C -0.017 4.017 14 C -0.178 4.178 15 C -0.011 4.011 16 H 0.062 0.938 17 C -0.552 4.552 18 H 0.095 0.905 19 C -0.127 4.127 20 N -0.533 5.533 21 Si 0.705 3.295 22 H -0.201 1.201 23 H -0.217 1.217 24 H -0.189 1.189 25 C -0.010 4.010 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.622 8.013 -10.573 14.827 hybrid contribution -0.240 0.179 1.371 1.404 sum 6.382 8.192 -9.202 13.875 Atomic orbital electron populations 1.21778 0.94117 1.02123 1.02516 1.21643 0.96672 1.01150 0.93380 0.89153 1.22702 0.80811 0.99784 0.97682 1.87934 1.20453 1.76495 1.45370 1.22572 0.99138 0.94643 0.84940 1.22120 0.93756 1.02999 0.99285 1.21390 0.97075 1.00695 0.93207 0.88863 1.20075 0.76993 0.87381 0.83325 1.90643 1.54770 1.13959 1.84092 1.48728 1.62903 1.09708 1.13113 1.22304 0.97213 0.96949 0.85236 1.23277 1.00383 0.95159 0.98981 1.20224 0.95265 0.94434 0.91218 0.93849 1.20849 1.32469 1.05253 0.96665 0.90502 1.24944 0.94344 0.94608 0.98799 1.69882 1.34487 1.20997 1.27918 0.86932 0.79370 0.79826 0.83338 1.20108 1.21747 1.18877 1.22249 0.99779 0.78298 1.00650 0.91922 0.92255 0.92412 0.92878 0.88617 0.88547 0.92727 0.90354 0.90241 0.92325 0.91499 0.90361 0.91914 0.92426 0.91289 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.99 37.16 0.33 -1.47 16 2 C -0.11 -1.38 2.14 -90.48 -0.19 -1.57 16 3 H 0.09 1.29 7.76 -51.93 -0.40 0.88 16 4 C 0.07 0.72 6.14 37.20 0.23 0.95 16 5 O -0.38 -4.67 10.77 -35.23 -0.38 -5.05 16 6 C 0.06 0.67 6.84 37.21 0.25 0.92 16 7 C -0.14 -1.73 5.40 -26.59 -0.14 -1.88 16 8 C -0.10 -1.41 1.75 -91.59 -0.16 -1.57 16 9 H 0.09 1.24 6.90 -51.93 -0.36 0.88 16 10 C 0.53 9.17 5.86 -10.98 -0.06 9.11 16 11 O -0.56 -11.04 16.22 5.55 0.09 -10.95 16 12 N -0.61 -10.89 3.32 -170.38 -0.57 -11.46 16 13 C 0.11 1.89 6.90 -2.41 -0.02 1.87 16 14 C -0.14 -2.76 5.46 -24.46 -0.13 -2.90 16 15 C 0.01 0.17 2.32 -89.93 -0.21 -0.04 16 16 H 0.04 0.94 7.03 -51.93 -0.36 0.57 16 17 C -0.51 -13.20 9.05 -34.44 -0.31 -13.51 16 18 H 0.08 2.13 7.77 -52.49 -0.41 1.72 16 19 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 20 N -0.90 -25.89 13.96 55.43 0.77 -25.12 16 21 Si 0.88 20.28 24.81 -169.99 -4.22 16.06 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.26 -5.80 6.46 56.52 0.36 -5.43 16 25 C 0.11 2.03 5.78 -3.07 -0.02 2.02 16 26 H 0.06 0.91 7.11 -51.93 -0.37 0.54 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 37 H 0.08 1.61 8.04 -51.93 -0.42 1.19 16 38 H 0.06 1.23 5.61 -51.93 -0.29 0.94 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.07 1.26 7.12 -51.93 -0.37 0.89 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 316.99 15.07 4.78 4.78 Total: -1.00 -29.74 316.99 -6.85 -36.60 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.80 Total: 1.26 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.53 Total: -6.13 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.21 Total: -36.58 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.29 Total: -16.00 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.22 Total: 16.06 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.74 -6.85 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397583650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.130 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds