Wall clock time and date at job start Mon Mar 30 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.52036 * 2 1 4 4 C 1.53089 * 109.52112 * 239.86863 * 2 1 3 5 5 O 1.43041 * 109.33910 * 182.48834 * 4 2 1 6 6 C 1.42902 * 114.13410 * 61.11996 * 5 4 2 7 7 C 1.53093 * 109.41440 * 298.83816 * 6 5 4 8 8 C 1.53172 * 109.16071 * 57.61074 * 7 6 5 9 9 H 1.09004 * 109.62077 * 62.93255 * 8 7 6 10 10 C 1.50700 * 109.54143 * 183.14998 * 8 7 6 11 11 O 1.21289 * 120.00037 * 84.26974 * 10 8 7 12 12 N 1.34778 * 120.00021 * 264.26647 * 10 8 7 13 13 C 1.47425 * 125.64728 * 184.71916 * 12 10 8 14 14 C 1.55131 * 104.72366 * 155.81738 * 13 12 10 15 15 C 1.55159 * 101.48194 * 37.29762 * 14 13 12 16 16 H 1.08997 * 110.71940 * 82.69386 * 15 14 13 17 17 C 1.50701 * 110.71454 * 205.96980 * 15 14 13 18 18 H 1.08001 * 119.99672 * 113.52093 * 17 15 14 19 19 C 1.37872 * 120.00149 * 293.51661 * 17 15 14 20 20 N 1.31517 * 120.00087 * 180.02562 * 19 17 15 21 21 Si 1.86796 * 120.00049 * 0.02562 * 19 17 15 22 22 H 1.48510 * 109.47285 * 89.99385 * 21 19 17 23 23 H 1.48495 * 109.47392 * 209.99641 * 21 19 17 24 24 H 1.48500 * 109.47194 * 330.00121 * 21 19 17 25 25 C 1.47013 * 125.64868 * 5.03033 * 12 10 8 26 26 H 1.08998 * 109.47279 * 300.00409 * 1 2 3 27 27 H 1.09006 * 109.46983 * 60.00508 * 1 2 3 28 28 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.48330 * 302.40218 * 4 2 1 30 30 H 1.08993 * 109.48154 * 62.44316 * 4 2 1 31 31 H 1.08998 * 109.47843 * 178.85607 * 6 5 4 32 32 H 1.08994 * 109.47938 * 58.82311 * 6 5 4 33 33 H 1.08996 * 109.52073 * 297.69961 * 7 6 5 34 34 H 1.08997 * 109.51930 * 177.51370 * 7 6 5 35 35 H 1.09006 * 110.36802 * 274.74926 * 13 12 10 36 36 H 1.09003 * 110.36869 * 37.07038 * 13 12 10 37 37 H 1.09000 * 111.18959 * 279.19210 * 14 13 12 38 38 H 1.08996 * 110.93893 * 155.28685 * 14 13 12 39 39 H 0.97001 * 119.99973 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.88072 * 300.43747 * 25 12 10 41 41 H 1.08998 * 109.88752 * 61.44851 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2479 5 8 3.4708 -0.7729 -1.2149 6 6 4.0057 -1.4795 -0.0939 7 6 3.5716 -0.7850 1.1996 8 6 2.0418 -0.7246 1.2488 9 1 1.6362 -1.7360 1.2755 10 6 1.6064 0.0258 2.4810 11 8 1.5496 1.2373 2.4649 12 7 1.2800 -0.6492 3.6009 13 6 0.7468 -0.0526 4.8392 14 6 -0.0211 -1.2074 5.5343 15 6 0.8893 -2.4218 5.2121 16 1 1.7179 -2.4805 5.9177 17 6 0.0926 -3.7010 5.2151 18 1 -0.0472 -4.2522 4.2970 19 6 -0.4578 -4.1676 6.3900 20 7 -1.1527 -5.2842 6.3927 21 14 -0.2166 -3.2138 7.9778 22 1 -1.3211 -2.2343 8.1397 23 1 -0.2178 -4.1554 9.1260 24 1 1.0809 -2.4930 7.9301 25 6 1.4028 -2.1017 3.7923 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6441 -1.7390 -1.2679 30 1 1.7150 -0.1882 -2.1389 31 1 5.0939 -1.4873 -0.1547 32 1 3.6338 -2.5040 -0.0989 33 1 3.9771 0.2264 1.2237 34 1 3.9417 -1.3474 2.0568 35 1 1.5615 0.2993 5.4721 36 1 0.0673 0.7665 4.6036 37 1 -1.0133 -1.3372 5.1019 38 1 -0.0846 -1.0412 6.6097 39 1 -1.5402 -5.6122 7.2192 40 1 0.7977 -2.6255 3.0524 41 1 2.4464 -2.4014 3.6968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397583650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:14 Heat of formation + Delta-G solvation = -114.976583 kcal Electronic energy + Delta-G solvation = -21466.682420 eV Core-core repulsion = 18344.992981 eV Total energy + Delta-G solvation = -3121.689438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63809 -39.90978 -38.46137 -35.38844 -34.90967 -33.36950 -32.46616 -30.39877 -28.03645 -27.15755 -26.50947 -23.84575 -23.32549 -21.74186 -21.41495 -19.99835 -19.10252 -18.23993 -17.31539 -17.17045 -16.76759 -16.38148 -15.92809 -15.67489 -15.58650 -14.86757 -14.80604 -14.67345 -14.31465 -13.90698 -13.73107 -13.39456 -13.24229 -13.05110 -13.01403 -12.83128 -12.68554 -12.41427 -12.03282 -11.93152 -11.73128 -11.60766 -11.54804 -11.41125 -11.15208 -10.93320 -10.72332 -10.38819 -9.64212 -8.28482 -6.33434 1.36219 1.39763 1.48215 1.54249 2.00041 2.35161 2.94411 3.06002 3.40000 3.56567 3.70964 3.87048 3.88384 3.96694 4.17455 4.22045 4.25560 4.38741 4.43316 4.45578 4.54452 4.57647 4.62244 4.70365 4.73957 4.79037 4.87910 4.88635 5.03554 5.04068 5.09341 5.14874 5.18780 5.19484 5.33518 5.54425 5.64408 6.23037 6.26975 6.54089 6.72376 7.10092 7.32463 8.87323 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.005044 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.369724 B = 5550.314379 C = 5825.116292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.071 0.929 4 C 0.070 3.930 5 O -0.398 6.398 6 C 0.064 3.936 7 C -0.140 4.140 8 C -0.101 4.101 9 H 0.100 0.900 10 C 0.533 3.467 11 O -0.585 6.585 12 N -0.616 5.616 13 C 0.108 3.892 14 C -0.135 4.135 15 C 0.003 3.997 16 H 0.049 0.951 17 C -0.511 4.511 18 H 0.043 0.957 19 C 0.020 3.980 20 N -0.946 5.946 21 Si 0.933 3.067 22 H -0.266 1.266 23 H -0.296 1.296 24 H -0.240 1.240 25 C 0.122 3.878 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.266 0.734 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 8.221 -10.923 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.089 0.911 4 C -0.007 4.007 5 O -0.317 6.317 6 C -0.012 4.012 7 C -0.178 4.178 8 C -0.123 4.123 9 H 0.118 0.882 10 C 0.323 3.677 11 O -0.466 6.466 12 N -0.348 5.348 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.017 4.017 16 H 0.067 0.933 17 C -0.549 4.549 18 H 0.062 0.938 19 C -0.178 4.178 20 N -0.586 5.586 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.223 1.223 24 H -0.164 1.164 25 C 0.000 4.000 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.955 8.850 -11.036 16.229 hybrid contribution -0.673 -0.093 1.443 1.595 sum 7.282 8.758 -9.593 14.891 Atomic orbital electron populations 1.21748 0.93966 1.02392 1.02095 1.21623 0.96769 1.00215 0.93928 0.91100 1.22771 0.80340 1.00447 0.97138 1.87925 1.21042 1.76846 1.45881 1.22702 1.00324 0.94733 0.83478 1.22127 0.92221 1.02686 1.00764 1.21478 0.98431 1.00460 0.91883 0.88221 1.20679 0.76035 0.87171 0.83793 1.90627 1.56010 1.15385 1.84540 1.48787 1.63065 1.09470 1.13465 1.22273 0.97534 0.96175 0.85425 1.23131 0.99534 0.95129 0.99526 1.20170 0.95129 0.92897 0.93481 0.93277 1.21102 1.32080 1.06458 0.95242 0.93845 1.25750 0.94246 0.95424 1.02392 1.70027 1.36553 1.23201 1.28821 0.86015 0.80610 0.78665 0.78850 1.19165 1.22322 1.16367 1.22065 1.00919 0.78482 0.98522 0.94776 0.90241 0.91745 0.91595 0.86907 0.86632 0.91487 0.91642 0.89469 0.90858 0.91282 0.91806 0.91274 0.92528 0.91822 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.99 71.98 0.65 -2.72 16 2 C -0.11 -2.53 2.14 -10.70 -0.02 -2.55 16 3 H 0.07 1.98 7.76 -2.39 -0.02 1.96 16 4 C 0.07 1.33 6.14 72.01 0.44 1.77 16 5 O -0.40 -8.68 10.77 -148.98 -1.60 -10.28 16 6 C 0.06 1.17 6.84 72.01 0.49 1.66 16 7 C -0.14 -3.09 5.40 30.68 0.17 -2.93 16 8 C -0.10 -2.63 1.75 -11.42 -0.02 -2.65 16 9 H 0.10 2.46 6.90 -2.38 -0.02 2.44 16 10 C 0.53 17.72 5.86 87.66 0.51 18.23 16 11 O -0.58 -22.93 16.22 -3.06 -0.05 -22.98 16 12 N -0.62 -20.94 3.32 -811.34 -2.70 -23.64 16 13 C 0.11 3.68 6.90 86.93 0.60 4.28 16 14 C -0.13 -5.12 5.46 32.06 0.18 -4.94 16 15 C 0.00 0.11 2.32 -10.35 -0.02 0.08 16 16 H 0.05 1.99 7.03 -2.39 -0.02 1.98 16 17 C -0.51 -26.32 9.05 25.60 0.23 -26.09 16 18 H 0.04 2.47 7.77 -2.91 -0.02 2.45 16 19 C 0.02 1.07 5.46 84.65 0.46 1.53 16 20 N -0.95 -55.90 13.96 21.45 0.30 -55.61 16 21 Si 0.93 41.03 24.81 68.60 1.70 42.73 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.24 -9.56 6.46 99.48 0.64 -8.92 16 25 C 0.12 4.22 5.78 86.73 0.50 4.72 16 26 H 0.03 0.98 7.11 -2.39 -0.02 0.96 16 27 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 37 H 0.06 2.59 8.04 -2.39 -0.02 2.57 16 38 H 0.07 2.53 5.61 -2.39 -0.01 2.51 16 39 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.06 2.27 7.12 -2.39 -0.02 2.25 16 41 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -64.30 316.99 2.75 -61.56 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.93 Total: 17.82 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 4.16 Total: -9.60 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -2.40 Total: -79.24 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.65 Total: -33.26 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.70 Total: 42.73 kcal Total: -64.30 2.75 -61.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397583650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.421 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds