Wall clock time and date at job start Mon Mar 30 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.57391 * 2 1 4 4 C 1.53096 * 109.52452 * 239.84659 * 2 1 3 5 5 O 1.42907 * 109.40877 * 297.70024 * 4 2 1 6 6 C 1.42902 * 114.09926 * 298.83857 * 5 4 2 7 7 C 1.53107 * 109.48416 * 61.11402 * 6 5 4 8 8 C 1.53177 * 109.15709 * 302.52270 * 7 6 5 9 9 H 1.09000 * 109.54822 * 296.93780 * 8 7 6 10 10 C 1.50697 * 109.53980 * 176.76071 * 8 7 6 11 11 O 1.21286 * 120.00081 * 239.88785 * 10 8 7 12 12 N 1.34780 * 120.00308 * 59.88849 * 10 8 7 13 13 C 1.47020 * 125.65177 * 175.39554 * 12 10 8 14 14 C 1.54319 * 107.40281 * 181.10299 * 13 12 10 15 15 C 1.55157 * 102.94185 * 22.11561 * 14 13 12 16 16 H 1.08997 * 111.00248 * 82.61435 * 15 14 13 17 17 C 1.50696 * 111.00136 * 206.42358 * 15 14 13 18 18 H 1.08000 * 119.99998 * 118.55088 * 17 15 14 19 19 C 1.37878 * 120.00412 * 298.54374 * 17 15 14 20 20 N 1.31521 * 119.99641 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00458 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46967 * 59.99842 * 21 19 17 23 23 H 1.48494 * 109.47322 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46852 * 300.00042 * 21 19 17 25 25 C 1.47747 * 125.81950 * 355.30315 * 12 10 8 26 26 H 1.09010 * 109.47320 * 299.84077 * 1 2 3 27 27 H 1.08996 * 109.47494 * 59.84238 * 1 2 3 28 28 H 1.09001 * 109.47094 * 179.84592 * 1 2 3 29 29 H 1.08996 * 109.47650 * 57.67740 * 4 2 1 30 30 H 1.08996 * 109.48000 * 177.70757 * 4 2 1 31 31 H 1.09002 * 109.47921 * 181.14312 * 6 5 4 32 32 H 1.08997 * 109.47857 * 301.18156 * 6 5 4 33 33 H 1.08996 * 109.59366 * 182.57802 * 7 6 5 34 34 H 1.08993 * 109.45321 * 62.38531 * 7 6 5 35 35 H 1.09004 * 109.87721 * 61.60805 * 13 12 10 36 36 H 1.09003 * 109.88266 * 300.60168 * 13 12 10 37 37 H 1.08995 * 110.72049 * 140.48334 * 14 13 12 38 38 H 1.08997 * 110.71770 * 263.57556 * 14 13 12 39 39 H 0.96994 * 119.99842 * 179.97438 * 20 19 17 40 40 H 1.09004 * 110.28946 * 37.02538 * 25 12 10 41 41 H 1.09000 * 110.52763 * 274.75880 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 1.6098 -2.0867 -1.2163 6 6 2.0971 -2.8277 -0.0958 7 6 1.5895 -2.1879 1.1993 8 6 2.0419 -0.7252 1.2483 9 1 3.1307 -0.6809 1.2749 10 6 1.4803 -0.0649 2.4809 11 8 0.7496 0.8972 2.3740 12 7 1.7899 -0.5434 3.7023 13 6 1.3924 0.0572 4.9840 14 6 1.9931 -0.8134 6.1077 15 6 3.1671 -1.5370 5.3967 16 1 4.0524 -0.9024 5.3602 17 6 3.4756 -2.8517 6.0656 18 1 3.3793 -3.7745 5.5128 19 6 3.8809 -2.8765 7.3832 20 7 3.9978 -1.7527 8.0565 21 14 4.2641 -4.5060 8.2121 22 1 5.3669 -5.1841 7.4847 23 1 4.6744 -4.2618 9.6182 24 1 3.0547 -5.3678 8.1925 25 6 2.5829 -1.7589 3.9792 26 1 -0.3634 0.5114 0.8915 27 1 -0.3634 0.5162 -0.8885 28 1 -0.3633 -1.0277 -0.0028 29 1 1.6452 -0.2382 -2.1388 30 1 3.1308 -0.6890 -1.2678 31 1 1.7407 -3.8560 -0.1572 32 1 3.1870 -2.8195 -0.1008 33 1 1.9973 -2.7241 2.0562 34 1 0.5009 -2.2334 1.2243 35 1 0.3055 0.0702 5.0659 36 1 1.7815 1.0730 5.0539 37 1 2.3610 -0.1907 6.9231 38 1 1.2589 -1.5312 6.4735 39 1 4.2826 -1.7702 8.9835 40 1 3.3863 -1.8605 3.2495 41 1 1.9451 -2.6427 3.9657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397583655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:16 Heat of formation + Delta-G solvation = -107.248866 kcal Electronic energy + Delta-G solvation = -21541.522667 eV Core-core repulsion = 18420.168328 eV Total energy + Delta-G solvation = -3121.354339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73243 -39.84427 -38.39099 -35.16645 -34.93840 -33.11640 -31.83149 -30.19189 -28.11741 -26.97946 -26.53792 -24.08715 -23.74422 -21.68097 -20.81816 -19.78611 -18.51781 -18.00492 -17.49211 -16.92569 -16.67986 -16.43854 -16.21807 -15.91357 -15.05927 -15.00646 -14.58144 -14.40306 -14.22281 -13.96642 -13.58198 -13.28232 -13.00050 -12.93494 -12.82973 -12.59708 -12.47805 -12.35257 -12.18885 -11.98637 -11.63481 -11.48797 -11.30846 -11.29495 -10.92729 -10.83320 -10.49036 -10.22252 -9.55164 -8.12671 -6.23242 1.48003 1.48677 1.55549 1.59588 2.06791 2.46260 3.00929 3.20275 3.45280 3.63483 3.76675 3.99797 4.07049 4.14818 4.23521 4.25803 4.29521 4.49673 4.53884 4.60067 4.64238 4.65668 4.71197 4.78930 4.81578 4.88451 4.94388 5.05476 5.12208 5.20599 5.23331 5.30915 5.40037 5.52984 5.58877 5.74081 5.89204 6.27172 6.29905 6.63687 6.85304 7.16818 7.45776 8.96342 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028247 B = 0.004995 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.033612 B = 5603.727764 C = 6356.135640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 H 0.079 0.921 4 C 0.068 3.932 5 O -0.394 6.394 6 C 0.065 3.935 7 C -0.153 4.153 8 C -0.096 4.096 9 H 0.109 0.891 10 C 0.524 3.476 11 O -0.578 6.578 12 N -0.615 5.615 13 C 0.110 3.890 14 C -0.098 4.098 15 C 0.036 3.964 16 H 0.011 0.989 17 C -0.529 4.529 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.918 5.918 21 Si 0.955 3.045 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.271 1.271 25 C 0.115 3.885 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 -1.200 -15.126 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 H 0.098 0.902 4 C -0.008 4.008 5 O -0.313 6.313 6 C -0.011 4.011 7 C -0.191 4.191 8 C -0.117 4.117 9 H 0.127 0.873 10 C 0.315 3.685 11 O -0.459 6.459 12 N -0.347 5.347 13 C -0.013 4.013 14 C -0.137 4.137 15 C 0.017 3.983 16 H 0.029 0.971 17 C -0.567 4.567 18 H 0.085 0.915 19 C -0.182 4.182 20 N -0.557 5.557 21 Si 0.781 3.219 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.196 1.196 25 C -0.006 4.006 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.748 -0.684 -15.220 15.481 hybrid contribution 0.342 -0.227 1.476 1.532 sum -2.406 -0.911 -13.744 13.983 Atomic orbital electron populations 1.21978 0.94812 1.01580 1.02478 1.21544 0.97324 0.99683 0.93654 0.90241 1.22730 0.99222 0.81651 0.97211 1.87903 1.74685 1.23006 1.45707 1.22668 0.99005 0.95885 0.83582 1.22388 1.02220 0.93466 1.01042 1.21367 1.01977 0.96776 0.91599 0.87333 1.20850 0.80239 0.83400 0.84050 1.90553 1.38854 1.30046 1.86497 1.48875 1.52876 1.27740 1.05184 1.21947 0.98710 0.96826 0.83800 1.22372 0.98064 0.97514 0.95724 1.19779 0.92786 0.95442 0.90291 0.97107 1.21266 1.45749 0.92929 0.96768 0.91450 1.25709 0.95066 0.99277 0.98152 1.70069 1.47656 1.27739 1.10210 0.85660 0.78867 0.80226 0.77193 1.19359 1.21695 1.19576 1.22647 0.93931 0.85794 0.98232 0.92284 0.92101 0.93094 0.87229 0.91514 0.87106 0.91415 0.89150 0.91653 0.92541 0.93066 0.92262 0.93174 0.93025 0.89982 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.43 71.98 0.61 -3.40 16 2 C -0.10 -2.44 2.44 -10.70 -0.03 -2.47 16 3 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.07 1.28 6.25 72.01 0.45 1.73 16 5 O -0.39 -8.50 10.19 -148.98 -1.52 -10.02 16 6 C 0.07 1.22 6.84 72.02 0.49 1.72 16 7 C -0.15 -3.55 4.76 30.69 0.15 -3.40 16 8 C -0.10 -2.50 1.75 -11.42 -0.02 -2.52 16 9 H 0.11 2.54 7.97 -2.39 -0.02 2.52 16 10 C 0.52 18.15 6.93 87.66 0.61 18.76 16 11 O -0.58 -23.16 13.82 -3.05 -0.04 -23.20 16 12 N -0.61 -22.52 3.34 -810.97 -2.71 -25.23 16 13 C 0.11 4.33 6.86 86.73 0.60 4.93 16 14 C -0.10 -4.36 5.64 31.78 0.18 -4.18 16 15 C 0.04 1.65 2.96 -10.15 -0.03 1.62 16 16 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 17 C -0.53 -26.18 8.55 25.60 0.22 -25.96 16 18 H 0.07 3.16 7.79 -2.91 -0.02 3.13 16 19 C 0.02 0.90 5.34 84.65 0.45 1.36 16 20 N -0.92 -50.24 12.13 21.45 0.26 -49.98 16 21 Si 0.95 40.60 29.54 68.60 2.03 42.62 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 C 0.12 4.15 4.56 86.79 0.40 4.55 16 26 H 0.06 1.93 5.28 -2.38 -0.01 1.92 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.35 6.15 -2.39 -0.01 1.33 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 2.11 4.90 -2.39 -0.01 2.10 16 34 H 0.06 1.68 6.64 -2.39 -0.02 1.66 16 35 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.88 7.55 -2.39 -0.02 2.86 16 38 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 39 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 40 H 0.08 2.57 7.07 -2.38 -0.02 2.56 16 41 H 0.07 2.52 7.24 -2.39 -0.02 2.50 16 Total: -1.00 -59.41 311.86 3.10 -56.32 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.01 Total: 16.76 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.07 Total: -7.28 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -2.45 Total: -75.20 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.56 Total: -33.22 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -59.41 3.10 -56.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397583655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.931 kcal (2) G-P(sol) polarization free energy of solvation -59.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds