Wall clock time and date at job start Mon Mar 30 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.45970 * 2 1 4 4 C 1.54510 * 110.51094 * 237.24729 * 2 1 3 5 5 C 1.54486 * 104.06465 * 241.35808 * 4 2 1 6 6 O 1.44520 * 104.87299 * 23.90273 * 5 4 2 7 7 C 1.44417 * 105.22966 * 319.64141 * 6 5 4 8 8 H 1.08993 * 110.37701 * 281.47783 * 7 6 5 9 9 C 1.50702 * 110.37153 * 159.24892 * 7 6 5 10 10 O 1.21283 * 120.00262 * 357.95714 * 9 7 6 11 11 N 1.34777 * 119.99928 * 177.67620 * 9 7 6 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 7 13 13 C 1.53188 * 108.78248 * 126.36632 * 12 11 9 14 14 C 1.53041 * 109.31323 * 54.63155 * 13 12 11 15 15 C 1.53042 * 109.53960 * 298.64003 * 14 13 12 16 16 H 1.09003 * 109.49689 * 301.41711 * 15 14 13 17 17 C 1.50699 * 109.49909 * 181.31298 * 15 14 13 18 18 H 1.07997 * 120.00195 * 240.00020 * 17 15 14 19 19 C 1.37875 * 119.99513 * 60.00100 * 17 15 14 20 20 N 1.31512 * 120.00441 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99913 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47061 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47423 * 119.99657 * 21 19 17 24 24 H 1.48501 * 109.47275 * 240.00004 * 21 19 17 25 25 C 1.46929 * 120.63092 * 179.97438 * 11 9 7 26 26 H 1.08995 * 109.46766 * 297.39740 * 1 2 3 27 27 H 1.08999 * 109.46571 * 57.39285 * 1 2 3 28 28 H 1.09002 * 109.46908 * 177.39407 * 1 2 3 29 29 H 1.08998 * 110.51266 * 359.97438 * 4 2 1 30 30 H 1.08993 * 110.51327 * 122.57453 * 4 2 1 31 31 H 1.08990 * 110.37424 * 142.80891 * 5 4 2 32 32 H 1.08997 * 110.37307 * 265.03846 * 5 4 2 33 33 H 1.09001 * 109.58890 * 246.15338 * 12 11 9 34 34 H 1.08997 * 109.58518 * 6.57129 * 12 11 9 35 35 H 1.08997 * 109.49933 * 174.58934 * 13 12 11 36 36 H 1.09003 * 109.49114 * 294.65356 * 13 12 11 37 37 H 1.09004 * 109.45546 * 58.65884 * 14 13 12 38 38 H 1.08996 * 109.45855 * 178.61688 * 14 13 12 39 39 H 0.97000 * 120.00560 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.58730 * 353.42298 * 25 11 9 41 41 H 1.09003 * 109.58586 * 113.84896 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0714 -0.7829 -1.2171 5 6 2.8757 -1.9431 -0.5896 6 8 2.3090 -2.1171 0.7284 7 6 2.0713 -0.7797 1.2188 8 1 3.0013 -0.3341 1.5718 9 6 1.0479 -0.8007 2.3248 10 8 0.5282 -1.8470 2.6505 11 7 0.7142 0.3425 2.9559 12 6 1.3350 1.6178 2.5727 13 6 0.2289 2.6325 2.2667 14 6 -0.7157 2.7289 3.4669 15 6 -1.3659 1.3663 3.7173 16 1 -1.9098 1.0534 2.8259 17 6 -2.3201 1.4701 4.8791 18 1 -2.1685 0.8617 5.7584 19 6 -3.3867 2.3417 4.8193 20 7 -3.5711 3.0829 3.7486 21 14 -4.5692 2.4710 6.2596 22 1 -4.1439 1.5386 7.3345 23 1 -4.5653 3.8618 6.7800 24 1 -5.9387 2.1148 5.8093 25 6 -0.2823 0.3382 4.0356 26 1 -0.3633 0.4729 0.9124 27 1 -0.3632 0.5538 -0.8657 28 1 -0.3633 -1.0266 -0.0467 29 1 1.2491 -1.1704 -1.8185 30 1 2.7200 -0.1488 -1.8214 31 1 2.7535 -2.8518 -1.1788 32 1 3.9305 -1.6778 -0.5169 33 1 1.9512 1.9855 3.3932 34 1 1.9524 1.4719 1.6864 35 1 0.6738 3.6088 2.0745 36 1 -0.3297 2.3080 1.3887 37 1 -0.1515 3.0297 4.3497 38 1 -1.4897 3.4683 3.2614 39 1 -4.3213 3.6964 3.7067 40 1 -0.7317 -0.6518 4.1142 41 1 0.1991 0.5991 4.9781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397618105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:41 Heat of formation + Delta-G solvation = -84.851954 kcal Electronic energy + Delta-G solvation = -21972.079285 eV Core-core repulsion = 18851.696149 eV Total energy + Delta-G solvation = -3120.383137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61379 -38.51337 -36.64882 -33.94500 -33.07095 -31.37218 -30.66433 -29.54811 -26.97614 -25.08757 -24.64611 -22.77298 -21.70810 -20.97353 -19.74968 -18.33012 -17.10434 -16.55721 -16.20641 -15.83485 -15.09932 -14.80061 -14.38564 -14.23189 -13.87114 -13.40765 -13.21411 -12.80854 -12.71608 -12.49041 -12.44941 -12.04241 -11.98904 -11.50594 -11.19088 -11.06470 -10.94350 -10.87042 -10.81618 -10.68701 -10.21338 -9.98893 -9.85622 -9.79660 -9.43464 -9.16404 -8.81977 -8.40391 -7.89538 -6.03660 -4.10428 3.00747 3.20498 3.28143 3.36709 3.41572 4.08118 4.39730 4.41847 4.61091 4.69299 4.96372 5.03603 5.15172 5.25401 5.29093 5.42058 5.49942 5.57410 5.61926 5.66768 5.77447 5.86331 5.98920 6.07381 6.11096 6.26857 6.36442 6.46139 6.49969 6.65527 6.67848 6.82504 6.97578 7.14848 7.31253 7.67742 7.88879 7.98563 8.05908 8.36093 8.65012 8.93473 9.54735 11.01913 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.005188 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.962539 B = 5395.831073 C = 5626.837196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.151 4.151 5 C 0.041 3.959 6 O -0.344 6.344 7 C 0.059 3.941 8 H 0.088 0.912 9 C 0.520 3.480 10 O -0.531 6.531 11 N -0.602 5.602 12 C 0.102 3.898 13 C -0.137 4.137 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.513 4.513 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.118 3.882 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 -1.355 -9.436 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.132 4.132 3 H 0.111 0.889 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.262 6.262 7 C -0.002 4.002 8 H 0.106 0.894 9 C 0.307 3.693 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.021 4.021 13 C -0.175 4.175 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.551 4.551 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.002 4.002 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.470 -2.006 -9.202 15.627 hybrid contribution -0.534 0.497 0.553 0.915 sum 11.936 -1.510 -8.649 14.818 Atomic orbital electron populations 1.22137 0.93023 1.02995 1.03795 1.22543 0.98203 0.99461 0.92946 0.88936 1.23060 1.00590 0.97287 0.97894 1.23467 0.96673 0.99164 0.84281 1.89290 1.82885 1.23695 1.30343 1.22978 0.97738 0.85057 0.94425 0.89449 1.19923 0.82951 0.84020 0.82439 1.90686 1.54156 1.30604 1.65288 1.48232 1.42233 1.06322 1.36786 1.21899 0.95927 0.84601 0.99652 1.22074 0.97215 0.96876 1.01381 1.21632 0.97414 1.02375 0.93623 1.18897 0.91299 0.90167 0.97567 0.95256 1.21110 1.09556 1.22611 1.01870 0.92409 1.24923 0.97458 0.95489 0.95880 1.69873 1.29997 1.25279 1.27646 0.86531 0.80961 0.77787 0.82705 1.19713 1.21055 1.21033 1.21920 0.89067 1.02270 0.86958 0.89954 0.92105 0.92067 0.90197 0.90329 0.88894 0.92251 0.91833 0.91007 0.92458 0.91929 0.94555 0.88587 0.93041 0.90270 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 7.95 37.16 0.30 -2.10 16 2 C -0.11 -1.37 2.67 -89.05 -0.24 -1.61 16 3 H 0.09 0.94 6.63 -51.93 -0.34 0.59 16 4 C -0.15 -1.47 6.74 -25.16 -0.17 -1.64 16 5 C 0.04 0.44 7.63 37.94 0.29 0.73 16 6 O -0.34 -5.48 10.92 -54.44 -0.59 -6.07 16 7 C 0.06 0.87 2.67 -27.10 -0.07 0.80 16 8 H 0.09 1.07 7.75 -51.93 -0.40 0.67 16 9 C 0.52 9.87 5.39 -10.98 -0.06 9.81 16 10 O -0.53 -12.38 15.97 -13.65 -0.22 -12.60 16 11 N -0.60 -11.05 2.15 -173.05 -0.37 -11.42 16 12 C 0.10 1.52 5.57 -3.71 -0.02 1.50 16 13 C -0.14 -2.31 5.87 -26.61 -0.16 -2.47 16 14 C -0.11 -2.44 4.96 -26.69 -0.13 -2.57 16 15 C 0.04 0.96 2.24 -91.89 -0.21 0.75 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.51 -13.75 8.56 -34.44 -0.29 -14.04 16 18 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.60 11.31 55.43 0.63 -23.97 16 21 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.12 2.56 5.63 -3.95 -0.02 2.54 16 26 H 0.08 1.44 3.94 -51.93 -0.20 1.23 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.79 7.73 -51.93 -0.40 0.38 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.86 4.06 -51.93 -0.21 0.64 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 2.38 6.04 -51.93 -0.31 2.06 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.08 1.86 7.01 -51.93 -0.36 1.50 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -30.99 309.44 -8.14 -39.13 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.34 Total: 0.98 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.88 Total: -6.67 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.26 Total: -35.39 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.81 Total: -18.67 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.99 -8.14 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397618105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.725 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds