Wall clock time and date at job start Mon Mar 30 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.45970 * 2 1 4 4 C 1.54510 * 110.51094 * 237.24729 * 2 1 3 5 5 C 1.54486 * 104.06465 * 241.35808 * 4 2 1 6 6 O 1.44520 * 104.87299 * 23.90273 * 5 4 2 7 7 C 1.44417 * 105.22966 * 319.64141 * 6 5 4 8 8 H 1.08993 * 110.37701 * 281.47783 * 7 6 5 9 9 C 1.50702 * 110.37153 * 159.24892 * 7 6 5 10 10 O 1.21283 * 120.00262 * 357.95714 * 9 7 6 11 11 N 1.34777 * 119.99928 * 177.67620 * 9 7 6 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 7 13 13 C 1.53188 * 108.78248 * 126.36632 * 12 11 9 14 14 C 1.53041 * 109.31323 * 54.63155 * 13 12 11 15 15 C 1.53042 * 109.53960 * 298.64003 * 14 13 12 16 16 H 1.09003 * 109.49689 * 301.41711 * 15 14 13 17 17 C 1.50699 * 109.49909 * 181.31298 * 15 14 13 18 18 H 1.07997 * 120.00195 * 240.00020 * 17 15 14 19 19 C 1.37875 * 119.99513 * 60.00100 * 17 15 14 20 20 N 1.31512 * 120.00441 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99913 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47061 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47423 * 119.99657 * 21 19 17 24 24 H 1.48501 * 109.47275 * 240.00004 * 21 19 17 25 25 C 1.46929 * 120.63092 * 179.97438 * 11 9 7 26 26 H 1.08995 * 109.46766 * 297.39740 * 1 2 3 27 27 H 1.08999 * 109.46571 * 57.39285 * 1 2 3 28 28 H 1.09002 * 109.46908 * 177.39407 * 1 2 3 29 29 H 1.08998 * 110.51266 * 359.97438 * 4 2 1 30 30 H 1.08993 * 110.51327 * 122.57453 * 4 2 1 31 31 H 1.08990 * 110.37424 * 142.80891 * 5 4 2 32 32 H 1.08997 * 110.37307 * 265.03846 * 5 4 2 33 33 H 1.09001 * 109.58890 * 246.15338 * 12 11 9 34 34 H 1.08997 * 109.58518 * 6.57129 * 12 11 9 35 35 H 1.08997 * 109.49933 * 174.58934 * 13 12 11 36 36 H 1.09003 * 109.49114 * 294.65356 * 13 12 11 37 37 H 1.09004 * 109.45546 * 58.65884 * 14 13 12 38 38 H 1.08996 * 109.45855 * 178.61688 * 14 13 12 39 39 H 0.97000 * 120.00560 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.58730 * 353.42298 * 25 11 9 41 41 H 1.09003 * 109.58586 * 113.84896 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0714 -0.7829 -1.2171 5 6 2.8757 -1.9431 -0.5896 6 8 2.3090 -2.1171 0.7284 7 6 2.0713 -0.7797 1.2188 8 1 3.0013 -0.3341 1.5718 9 6 1.0479 -0.8007 2.3248 10 8 0.5282 -1.8470 2.6505 11 7 0.7142 0.3425 2.9559 12 6 1.3350 1.6178 2.5727 13 6 0.2289 2.6325 2.2667 14 6 -0.7157 2.7289 3.4669 15 6 -1.3659 1.3663 3.7173 16 1 -1.9098 1.0534 2.8259 17 6 -2.3201 1.4701 4.8791 18 1 -2.1685 0.8617 5.7584 19 6 -3.3867 2.3417 4.8193 20 7 -3.5711 3.0829 3.7486 21 14 -4.5692 2.4710 6.2596 22 1 -4.1439 1.5386 7.3345 23 1 -4.5653 3.8618 6.7800 24 1 -5.9387 2.1148 5.8093 25 6 -0.2823 0.3382 4.0356 26 1 -0.3633 0.4729 0.9124 27 1 -0.3632 0.5538 -0.8657 28 1 -0.3633 -1.0266 -0.0467 29 1 1.2491 -1.1704 -1.8185 30 1 2.7200 -0.1488 -1.8214 31 1 2.7535 -2.8518 -1.1788 32 1 3.9305 -1.6778 -0.5169 33 1 1.9512 1.9855 3.3932 34 1 1.9524 1.4719 1.6864 35 1 0.6738 3.6088 2.0745 36 1 -0.3297 2.3080 1.3887 37 1 -0.1515 3.0297 4.3497 38 1 -1.4897 3.4683 3.2614 39 1 -4.3213 3.6964 3.7067 40 1 -0.7317 -0.6518 4.1142 41 1 0.1991 0.5991 4.9781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397618105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:41 Heat of formation + Delta-G solvation = -103.929230 kcal Electronic energy + Delta-G solvation = -21972.906538 eV Core-core repulsion = 18851.696149 eV Total energy + Delta-G solvation = -3121.210389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.88236 -39.77802 -38.26122 -35.57347 -34.40531 -33.04402 -32.15277 -30.72940 -28.23851 -26.94069 -26.10619 -23.83421 -23.30647 -22.08094 -21.24684 -19.82483 -18.56728 -18.06287 -17.55762 -17.18347 -16.64168 -16.28922 -15.72126 -15.57031 -15.23761 -14.78554 -14.60985 -14.44512 -14.08761 -13.91493 -13.65572 -13.58562 -13.44732 -12.89899 -12.70362 -12.58561 -12.36912 -12.26330 -12.13253 -11.84976 -11.78838 -11.65319 -11.51537 -11.16070 -10.90773 -10.79537 -10.53659 -10.40768 -9.48771 -8.11193 -6.25794 1.38854 1.41523 1.52288 1.57955 1.87942 2.42797 3.03658 3.15545 3.37091 3.52850 3.75553 4.01408 4.06569 4.20994 4.26441 4.29913 4.35288 4.41486 4.54974 4.62507 4.65403 4.71163 4.80012 4.86661 4.89057 4.94089 4.99055 5.06664 5.12966 5.17361 5.24406 5.36102 5.47616 5.57609 5.62613 5.80353 5.95249 6.15570 6.35317 6.52439 6.83419 7.18887 7.42270 8.92551 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.005188 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.962539 B = 5395.831073 C = 5626.837196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.142 4.142 5 C 0.034 3.966 6 O -0.386 6.386 7 C 0.063 3.937 8 H 0.125 0.875 9 C 0.512 3.488 10 O -0.589 6.589 11 N -0.600 5.600 12 C 0.102 3.898 13 C -0.129 4.129 14 C -0.106 4.106 15 C 0.044 3.956 16 H -0.013 1.013 17 C -0.538 4.538 18 H 0.049 0.951 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.953 3.047 22 H -0.271 1.271 23 H -0.274 1.274 24 H -0.283 1.283 25 C 0.131 3.869 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.046 0.954 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.588 0.138 -10.784 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.127 4.127 3 H 0.146 0.854 4 C -0.179 4.179 5 C -0.042 4.042 6 O -0.305 6.305 7 C 0.002 3.998 8 H 0.142 0.858 9 C 0.301 3.699 10 O -0.470 6.470 11 N -0.333 5.333 12 C -0.020 4.020 13 C -0.167 4.167 14 C -0.144 4.144 15 C 0.024 3.976 16 H 0.005 0.995 17 C -0.577 4.577 18 H 0.067 0.933 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.779 3.221 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.209 1.209 25 C 0.008 3.992 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.171 -0.483 -10.571 18.497 hybrid contribution -1.420 -0.012 0.948 1.708 sum 13.750 -0.496 -9.623 16.790 Atomic orbital electron populations 1.22086 0.95694 1.00934 1.03050 1.22627 0.95776 1.01340 0.92941 0.85413 1.23062 1.00868 0.97078 0.96922 1.23785 0.98090 1.00175 0.82162 1.89264 1.83663 1.24636 1.32963 1.23102 0.97474 0.85648 0.93541 0.85769 1.20908 0.83153 0.83023 0.82859 1.90648 1.56482 1.32758 1.67097 1.48253 1.41307 1.07989 1.35749 1.22188 0.95437 0.82048 1.02288 1.21975 0.96804 0.99479 0.98421 1.21419 0.97539 0.99363 0.96054 1.18773 0.91549 0.92412 0.94822 0.99459 1.21460 1.10961 1.22739 1.02539 0.93255 1.25631 0.98878 0.95160 0.98267 1.69998 1.30421 1.25558 1.29032 0.85589 0.78689 0.78075 0.79794 1.19537 1.19990 1.20934 1.21467 0.89484 0.99597 0.88625 0.93010 0.90199 0.95103 0.90793 0.86498 0.88168 0.89358 0.89727 0.86778 0.88900 0.92780 0.94451 0.91831 0.92915 0.93525 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 7.95 71.98 0.57 -4.05 16 2 C -0.11 -2.24 2.67 -9.77 -0.03 -2.27 16 3 H 0.13 1.79 6.63 -2.39 -0.02 1.77 16 4 C -0.14 -2.18 6.74 31.61 0.21 -1.96 16 5 C 0.03 0.60 7.63 72.49 0.55 1.16 16 6 O -0.39 -11.69 10.92 -130.61 -1.43 -13.12 16 7 C 0.06 1.69 2.67 30.35 0.08 1.77 16 8 H 0.13 2.43 7.75 -2.39 -0.02 2.41 16 9 C 0.51 19.47 5.39 87.66 0.47 19.95 16 10 O -0.59 -28.92 15.97 15.33 0.24 -28.67 16 11 N -0.60 -21.88 2.15 -819.80 -1.76 -23.64 16 12 C 0.10 2.70 5.57 86.36 0.48 3.18 16 13 C -0.13 -4.06 5.87 30.67 0.18 -3.88 16 14 C -0.11 -4.62 4.96 30.62 0.15 -4.47 16 15 C 0.04 2.20 2.24 -11.62 -0.03 2.17 16 16 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 17 C -0.54 -30.08 8.56 25.60 0.22 -29.86 16 18 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 19 C 0.02 1.10 5.30 84.65 0.45 1.55 16 20 N -0.91 -51.77 11.31 21.45 0.24 -51.52 16 21 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 25 C 0.13 5.89 5.63 86.21 0.48 6.37 16 26 H 0.05 1.82 3.94 -2.39 -0.01 1.81 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.24 7.73 -2.39 -0.02 1.22 16 30 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 2.10 4.06 -2.39 -0.01 2.09 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 1.82 6.43 -2.39 -0.02 1.80 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 3.21 6.04 -2.39 -0.01 3.20 16 39 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.05 2.37 7.01 -2.39 -0.02 2.35 16 41 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -73.86 309.44 4.15 -69.71 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.01 Total: 11.72 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 3.81 Total: -10.34 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -1.52 Total: -75.16 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.18 Total: -41.79 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.86 4.15 -69.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397618105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.218 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds