Wall clock time and date at job start Mon Mar 30 2020 04:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 110.45940 * 2 1 4 4 C 1.54512 * 110.50811 * 237.25051 * 2 1 3 5 5 C 1.54474 * 104.06131 * 241.35594 * 4 2 1 6 6 O 1.44427 * 104.80458 * 23.97905 * 5 4 2 7 7 C 1.44426 * 105.27356 * 319.48632 * 6 5 4 8 8 H 1.08994 * 110.37464 * 281.67938 * 7 6 5 9 9 C 1.50703 * 110.36934 * 159.45561 * 7 6 5 10 10 O 1.21280 * 119.99960 * 356.44785 * 9 7 6 11 11 N 1.34773 * 119.99994 * 176.45939 * 9 7 6 12 12 C 1.46932 * 120.62883 * 359.97438 * 11 9 7 13 13 C 1.53191 * 108.77708 * 233.58861 * 12 11 9 14 14 C 1.53041 * 109.31144 * 305.36560 * 13 12 11 15 15 C 1.53042 * 109.53509 * 61.36816 * 14 13 12 16 16 H 1.08995 * 109.49806 * 58.58526 * 15 14 13 17 17 C 1.50712 * 109.49403 * 178.65024 * 15 14 13 18 18 H 1.07995 * 119.99618 * 120.00056 * 17 15 14 19 19 C 1.37873 * 119.99433 * 299.99563 * 17 15 14 20 20 N 1.31507 * 120.00681 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99617 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47091 * 89.99985 * 21 19 17 23 23 H 1.48493 * 109.47306 * 210.00224 * 21 19 17 24 24 H 1.48501 * 109.47340 * 330.00210 * 21 19 17 25 25 C 1.46929 * 120.63379 * 179.71794 * 11 9 7 26 26 H 1.09007 * 109.47015 * 297.39342 * 1 2 3 27 27 H 1.09002 * 109.47423 * 57.39110 * 1 2 3 28 28 H 1.09005 * 109.47568 * 177.39508 * 1 2 3 29 29 H 1.08999 * 110.51561 * 359.97438 * 4 2 1 30 30 H 1.09000 * 110.51089 * 122.57134 * 4 2 1 31 31 H 1.09006 * 110.37557 * 265.14427 * 5 4 2 32 32 H 1.09004 * 110.37781 * 142.81270 * 5 4 2 33 33 H 1.09000 * 109.58831 * 353.37799 * 12 11 9 34 34 H 1.09003 * 109.58651 * 113.65878 * 12 11 9 35 35 H 1.09000 * 109.49428 * 65.31486 * 13 12 11 36 36 H 1.09005 * 109.49835 * 185.38225 * 13 12 11 37 37 H 1.09000 * 109.45735 * 181.38293 * 14 13 12 38 38 H 1.08999 * 109.46041 * 301.35740 * 14 13 12 39 39 H 0.97002 * 120.00731 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.58703 * 246.20214 * 25 11 9 41 41 H 1.09000 * 109.58365 * 6.62696 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0212 0.0000 4 6 2.0713 -0.7829 -1.2172 5 6 2.8755 -1.9429 -0.5897 6 8 2.3068 -2.1168 0.7264 7 6 2.0713 -0.7797 1.2188 8 1 3.0023 -0.3353 1.5705 9 6 1.0499 -0.8010 2.3267 10 8 0.5099 -1.8427 2.6337 11 7 0.7363 0.3375 2.9762 12 6 1.3822 1.6071 2.6157 13 6 1.9880 2.2280 3.8784 14 6 0.9029 2.3568 4.9498 15 6 0.3663 0.9680 5.3042 16 1 1.1842 0.3420 5.6607 17 6 -0.6788 1.0929 6.3829 18 1 -1.6869 0.7514 6.2002 19 6 -0.3476 1.6429 7.6030 20 7 0.8801 2.0582 7.8258 21 14 -1.6427 1.7970 8.9404 22 1 -1.6421 0.5680 9.7740 23 1 -1.3362 2.9735 9.7930 24 1 -2.9793 1.9719 8.3174 25 6 -0.2619 0.3338 4.0543 26 1 -0.3633 0.4729 0.9125 27 1 -0.3634 0.5538 -0.8657 28 1 -0.3634 -1.0266 -0.0467 29 1 1.2489 -1.1703 -1.8186 30 1 2.7198 -0.1487 -1.8215 31 1 3.9301 -1.6770 -0.5154 32 1 2.7533 -2.8518 -1.1790 33 1 2.1699 1.4220 1.8855 34 1 0.6425 2.2858 2.1911 35 1 2.7907 1.5900 4.2483 36 1 2.3867 3.2149 3.6432 37 1 1.3256 2.8209 5.8408 38 1 0.0890 2.9744 4.5700 39 1 1.1131 2.4455 8.6840 40 1 -1.1336 0.9115 3.7470 41 1 -0.5592 -0.6917 4.2734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397618107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:43 Heat of formation + Delta-G solvation = -106.696457 kcal Electronic energy + Delta-G solvation = -21724.573359 eV Core-core repulsion = 18603.242973 eV Total energy + Delta-G solvation = -3121.330385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82311 -39.80443 -38.21986 -35.56387 -34.43818 -33.00182 -32.13945 -30.73537 -28.23340 -26.95902 -26.06364 -23.84055 -23.31101 -22.09671 -21.21374 -19.82320 -18.52027 -18.11140 -17.57954 -17.20451 -16.67152 -16.23847 -15.70249 -15.55207 -15.10754 -14.77513 -14.66377 -14.52254 -14.15545 -13.91434 -13.63446 -13.54961 -13.49354 -12.89210 -12.70804 -12.58251 -12.35151 -12.25671 -12.05208 -11.85462 -11.79503 -11.64967 -11.56220 -11.23718 -10.92645 -10.81643 -10.53870 -10.41850 -9.50719 -8.11087 -6.26342 1.40416 1.41848 1.51386 1.56780 1.89614 2.42785 3.02793 3.15510 3.36982 3.52189 3.76606 4.02609 4.07365 4.21103 4.24743 4.30787 4.37047 4.44028 4.53196 4.59802 4.65779 4.72339 4.78944 4.85500 4.87219 4.96632 4.98264 5.06695 5.11949 5.16902 5.27223 5.30382 5.46208 5.55671 5.61183 5.80640 5.93284 6.14281 6.34217 6.51713 6.82908 7.18530 7.41844 8.92560 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.004784 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.628802 B = 5851.146216 C = 6042.351047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.140 4.140 5 C 0.031 3.969 6 O -0.388 6.388 7 C 0.060 3.940 8 H 0.112 0.888 9 C 0.512 3.488 10 O -0.589 6.589 11 N -0.601 5.601 12 C 0.107 3.893 13 C -0.129 4.129 14 C -0.105 4.105 15 C 0.041 3.959 16 H -0.017 1.017 17 C -0.539 4.539 18 H 0.051 0.949 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.281 1.281 23 H -0.279 1.279 24 H -0.267 1.267 25 C 0.132 3.868 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 2.492 -19.812 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.127 4.127 3 H 0.146 0.854 4 C -0.178 4.178 5 C -0.045 4.045 6 O -0.307 6.307 7 C -0.001 4.001 8 H 0.130 0.870 9 C 0.301 3.699 10 O -0.470 6.470 11 N -0.333 5.333 12 C -0.014 4.014 13 C -0.167 4.167 14 C -0.143 4.143 15 C 0.022 3.978 16 H 0.002 0.998 17 C -0.577 4.577 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.207 1.207 23 H -0.204 1.204 24 H -0.191 1.191 25 C 0.009 3.991 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.178 1.830 -19.418 20.180 hybrid contribution -0.696 -0.204 1.478 1.646 sum 4.481 1.626 -17.940 18.563 Atomic orbital electron populations 1.21968 0.94793 1.01277 1.02947 1.22633 0.96645 1.01234 0.92194 0.85413 1.23053 1.00919 0.96830 0.96957 1.23789 0.97979 1.00498 0.82240 1.89253 1.83549 1.24767 1.33140 1.23104 0.97285 0.85728 0.93953 0.87024 1.20852 0.83118 0.82880 0.83009 1.90646 1.55629 1.32716 1.67974 1.48268 1.41369 1.08697 1.34979 1.22127 0.98079 0.83874 0.97332 1.21938 0.97987 1.01318 0.95452 1.21416 0.96908 0.97879 0.98130 1.18959 0.94274 0.93661 0.90936 0.99845 1.21439 0.96722 1.40694 0.98882 0.93043 1.25667 0.97263 0.94889 1.00272 1.70000 1.19283 1.41845 1.24060 0.85612 0.79750 0.77546 0.79078 1.20749 1.20402 1.19115 1.21629 0.90395 1.00001 0.87033 0.93270 0.89270 0.94821 0.90220 0.86681 0.90006 0.88043 0.87079 0.89229 0.93862 0.88725 0.91931 0.94077 0.92910 0.91610 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.08 71.98 0.58 -2.81 16 2 C -0.11 -1.96 2.72 -9.78 -0.03 -1.99 16 3 H 0.13 1.44 7.03 -2.39 -0.02 1.43 16 4 C -0.14 -1.89 6.74 31.61 0.21 -1.67 16 5 C 0.03 0.55 7.63 72.48 0.55 1.11 16 6 O -0.39 -11.98 10.91 -130.63 -1.43 -13.41 16 7 C 0.06 1.64 2.65 30.35 0.08 1.72 16 8 H 0.11 2.52 7.41 -2.39 -0.02 2.50 16 9 C 0.51 19.58 5.34 87.66 0.47 20.04 16 10 O -0.59 -28.94 15.97 15.32 0.24 -28.69 16 11 N -0.60 -21.91 2.16 -818.11 -1.76 -23.67 16 12 C 0.11 2.85 5.25 86.36 0.45 3.30 16 13 C -0.13 -4.19 6.08 30.67 0.19 -4.00 16 14 C -0.11 -4.66 4.96 30.62 0.15 -4.51 16 15 C 0.04 2.09 2.26 -11.32 -0.03 2.06 16 16 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 17 C -0.54 -30.22 8.57 25.60 0.22 -30.00 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 19 C 0.02 1.02 5.30 84.65 0.45 1.47 16 20 N -0.91 -52.47 11.31 21.44 0.24 -52.23 16 21 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.13 5.92 5.68 86.50 0.49 6.41 16 26 H 0.05 1.29 5.83 -2.38 -0.01 1.27 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.08 1.09 7.73 -2.39 -0.02 1.07 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.11 2.06 4.60 -2.39 -0.01 2.05 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.06 3.20 6.04 -2.39 -0.01 3.19 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.05 2.38 7.00 -2.39 -0.02 2.37 16 Total: -1.00 -74.71 313.74 4.12 -70.58 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.01 Total: 10.31 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 3.80 Total: -8.87 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -1.52 Total: -75.90 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.18 Total: -42.10 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.71 4.12 -70.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397618107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.115 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds