Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.41382 * 2 1 4 4 C 1.54477 * 110.37491 * 237.68924 * 2 1 3 5 5 C 1.54510 * 104.18108 * 217.25643 * 4 2 1 6 6 C 1.54478 * 104.06500 * 359.93120 * 5 4 2 7 7 H 1.09003 * 110.36949 * 265.14479 * 6 5 4 8 8 C 1.50700 * 110.37139 * 142.81210 * 6 5 4 9 9 O 1.21283 * 119.99556 * 244.99570 * 8 6 5 10 10 N 1.34779 * 119.99989 * 64.99736 * 8 6 5 11 11 C 1.46919 * 120.63161 * 359.72039 * 10 8 6 12 12 C 1.52762 * 109.00828 * 233.58317 * 11 10 8 13 13 C 1.53036 * 109.38143 * 305.58800 * 12 11 10 14 14 C 1.53041 * 109.53882 * 61.24135 * 13 12 11 15 15 H 1.09002 * 109.52335 * 58.59862 * 14 13 12 16 16 C 1.50707 * 109.49938 * 178.68036 * 14 13 12 17 17 H 1.08003 * 119.99624 * 119.83553 * 16 14 13 18 18 C 1.37871 * 119.99861 * 299.84028 * 16 14 13 19 19 N 1.31514 * 120.00208 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99920 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47068 * 59.99514 * 20 18 16 22 22 H 1.48499 * 109.47101 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46845 * 300.00027 * 20 18 16 24 24 C 1.46928 * 120.62674 * 179.97438 * 10 8 6 25 25 O 1.44415 * 104.80258 * 23.97587 * 6 5 4 26 26 H 1.09006 * 109.46669 * 182.31372 * 1 2 3 27 27 H 1.08998 * 109.47481 * 302.31188 * 1 2 3 28 28 H 1.08994 * 109.46981 * 62.31486 * 1 2 3 29 29 H 1.09002 * 110.51371 * 98.54158 * 4 2 1 30 30 H 1.08994 * 110.51108 * 335.96806 * 4 2 1 31 31 H 1.09000 * 110.51039 * 118.57850 * 5 4 2 32 32 H 1.08999 * 110.50726 * 241.28208 * 5 4 2 33 33 H 1.09000 * 109.59119 * 353.41881 * 11 10 8 34 34 H 1.09001 * 109.58806 * 113.84289 * 11 10 8 35 35 H 1.08997 * 109.56483 * 185.55281 * 12 11 10 36 36 H 1.09003 * 109.35851 * 65.49981 * 12 11 10 37 37 H 1.08998 * 109.46485 * 301.22186 * 13 12 11 38 38 H 1.09003 * 109.46019 * 181.25707 * 13 12 11 39 39 H 0.97005 * 119.99920 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.58548 * 246.15393 * 24 10 8 41 41 H 1.09003 * 109.58668 * 6.58531 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0679 -0.7740 -1.2239 5 6 3.3174 -1.5083 -0.6882 6 6 3.3901 -1.0908 0.7973 7 1 4.0571 -0.2373 0.9193 8 6 3.8551 -2.2468 1.6450 9 8 3.1101 -2.7318 2.4701 10 7 5.0986 -2.7415 1.4861 11 6 6.0103 -2.1685 0.4866 12 6 6.5240 -3.2874 -0.4177 13 6 7.1462 -4.3900 0.4421 14 6 6.0830 -4.9716 1.3766 15 1 5.2563 -5.3672 0.7865 16 6 6.6885 -6.0792 2.2000 17 1 6.7038 -6.0047 3.2773 18 6 7.2229 -7.1875 1.5779 19 7 7.2038 -7.2784 0.2660 20 14 7.9740 -8.5600 2.5984 21 1 6.9433 -9.1213 3.5082 22 1 8.4741 -9.6296 1.6978 23 1 9.1013 -8.0203 3.4004 24 6 5.5664 -3.8678 2.3055 25 8 2.0369 -0.7250 1.1444 26 1 -0.3633 -1.0269 0.0415 27 1 -0.3634 0.5493 0.8685 28 1 -0.3633 0.4774 -0.9100 29 1 2.3430 -0.0840 -2.0215 30 1 1.3268 -1.4903 -1.5786 31 1 3.1930 -2.5876 -0.7760 32 1 4.2102 -1.1812 -1.2211 33 1 5.4776 -1.4309 -0.1137 34 1 6.8524 -1.6935 0.9899 35 1 7.2759 -2.8897 -1.0993 36 1 5.6933 -3.6984 -0.9913 37 1 7.9608 -3.9728 1.0340 38 1 7.5332 -5.1787 -0.2031 39 1 7.5801 -8.0580 -0.1717 40 1 6.3717 -3.5340 2.9598 41 1 4.7407 -4.2513 2.9050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397650113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -89.843327 kcal Electronic energy + Delta-G solvation = -21409.857462 eV Core-core repulsion = 18289.257883 eV Total energy + Delta-G solvation = -3120.599579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35000 -38.61638 -36.65224 -33.64617 -32.35516 -31.91489 -31.27092 -30.06309 -26.97491 -25.07690 -24.35471 -22.37857 -21.71272 -21.16544 -20.01024 -18.28634 -17.20051 -16.50498 -16.13347 -16.00530 -15.16021 -14.72329 -14.23358 -14.08451 -13.94474 -13.60198 -13.28048 -12.77163 -12.67856 -12.53436 -12.41247 -12.15322 -12.04276 -11.76934 -11.45002 -11.03400 -10.97309 -10.85201 -10.83142 -10.73823 -10.27779 -9.99128 -9.92836 -9.79412 -9.46106 -9.17130 -8.83671 -8.39326 -7.91471 -6.02857 -4.09875 2.99444 3.16351 3.31441 3.35686 3.39566 4.00670 4.41780 4.43372 4.55566 4.73133 4.86598 5.00994 5.11998 5.20722 5.26814 5.32862 5.36190 5.51745 5.60677 5.65215 5.71658 5.79241 5.90087 5.97105 6.01564 6.07670 6.30301 6.36818 6.45685 6.64523 6.70382 6.81743 6.97389 7.14931 7.31276 7.67687 7.89309 7.98540 8.05860 8.36432 8.64265 8.93469 9.55076 11.02716 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035440 B = 0.004551 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.871881 B = 6150.685297 C = 6403.773325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.069 0.931 4 C -0.149 4.149 5 C -0.146 4.146 6 C 0.061 3.939 7 H 0.089 0.911 8 C 0.514 3.486 9 O -0.531 6.531 10 N -0.600 5.600 11 C 0.102 3.898 12 C -0.135 4.135 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.118 3.882 25 O -0.343 6.343 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.261 0.739 40 H 0.056 0.944 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 15.171 -5.942 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.087 0.913 4 C -0.187 4.187 5 C -0.184 4.184 6 C -0.001 4.001 7 H 0.107 0.893 8 C 0.300 3.700 9 O -0.407 6.407 10 N -0.334 5.334 11 C -0.021 4.021 12 C -0.173 4.173 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.003 4.003 25 O -0.261 6.261 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.073 14.734 -5.431 16.837 hybrid contribution 0.710 -0.696 0.199 1.014 sum -5.364 14.038 -5.233 15.913 Atomic orbital electron populations 1.21783 0.93030 1.03249 1.02200 1.23083 0.95585 0.95307 0.85262 0.91298 1.23018 0.97705 0.99771 0.98226 1.23039 0.98912 1.02714 0.93741 1.22813 0.86554 0.96536 0.94161 0.89321 1.20064 0.81916 0.84144 0.83906 1.90687 1.53701 1.60458 1.35881 1.48213 1.12508 1.34605 1.38055 1.21843 0.93276 0.96414 0.90608 1.21928 1.00290 0.97073 0.98005 1.21628 0.98416 0.96311 0.98670 1.18978 0.94608 0.91070 0.93200 0.95257 1.21044 1.38614 1.02658 0.93046 0.92499 1.24925 0.95849 0.98039 0.94922 1.69861 1.45806 1.29354 1.07800 0.86635 0.79589 0.81603 0.80053 1.20207 1.21312 1.20246 1.22034 0.98686 0.85696 0.93866 1.89310 1.25377 1.74100 1.37332 0.91532 0.91852 0.91183 0.90320 0.90268 0.89717 0.89310 0.90861 0.91855 0.92385 0.92356 0.94530 0.88618 0.92926 0.92548 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.52 37.16 0.35 -1.03 16 2 C 0.07 0.72 3.93 -25.95 -0.10 0.62 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.48 6.62 -25.16 -0.17 -1.64 16 5 C -0.15 -1.76 5.52 -25.16 -0.14 -1.90 16 6 C 0.06 0.89 2.77 -27.11 -0.08 0.82 16 7 H 0.09 1.08 7.85 -51.93 -0.41 0.67 16 8 C 0.51 9.89 7.02 -10.98 -0.08 9.81 16 9 O -0.53 -12.56 15.96 -13.66 -0.22 -12.78 16 10 N -0.60 -11.22 2.98 -173.01 -0.52 -11.74 16 11 C 0.10 1.52 5.96 -3.94 -0.02 1.50 16 12 C -0.13 -2.30 6.06 -26.83 -0.16 -2.46 16 13 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 14 C 0.04 0.99 2.25 -91.63 -0.21 0.79 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -13.94 8.56 -34.44 -0.29 -14.24 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 20 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.12 2.58 5.66 -3.69 -0.02 2.56 16 25 O -0.34 -5.47 10.61 -54.45 -0.58 -6.05 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 31 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 32 H 0.09 0.85 6.54 -51.93 -0.34 0.52 16 33 H 0.07 0.86 3.97 -51.93 -0.21 0.66 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 2.39 6.05 -51.93 -0.31 2.08 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.89 7.00 -51.93 -0.36 1.52 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -31.53 318.67 -8.68 -40.21 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.64 Total: -0.22 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.14 Total: -6.12 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.11 Total: -35.92 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.80 Total: -18.82 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.53 -8.68 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397650113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.630 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds