Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.41382 * 2 1 4 4 C 1.54477 * 110.37491 * 237.68924 * 2 1 3 5 5 C 1.54510 * 104.18108 * 217.25643 * 4 2 1 6 6 C 1.54478 * 104.06500 * 359.93120 * 5 4 2 7 7 H 1.09003 * 110.36949 * 265.14479 * 6 5 4 8 8 C 1.50700 * 110.37139 * 142.81210 * 6 5 4 9 9 O 1.21283 * 119.99556 * 244.99570 * 8 6 5 10 10 N 1.34779 * 119.99989 * 64.99736 * 8 6 5 11 11 C 1.46919 * 120.63161 * 359.72039 * 10 8 6 12 12 C 1.52762 * 109.00828 * 233.58317 * 11 10 8 13 13 C 1.53036 * 109.38143 * 305.58800 * 12 11 10 14 14 C 1.53041 * 109.53882 * 61.24135 * 13 12 11 15 15 H 1.09002 * 109.52335 * 58.59862 * 14 13 12 16 16 C 1.50707 * 109.49938 * 178.68036 * 14 13 12 17 17 H 1.08003 * 119.99624 * 119.83553 * 16 14 13 18 18 C 1.37871 * 119.99861 * 299.84028 * 16 14 13 19 19 N 1.31514 * 120.00208 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99920 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47068 * 59.99514 * 20 18 16 22 22 H 1.48499 * 109.47101 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46845 * 300.00027 * 20 18 16 24 24 C 1.46928 * 120.62674 * 179.97438 * 10 8 6 25 25 O 1.44415 * 104.80258 * 23.97587 * 6 5 4 26 26 H 1.09006 * 109.46669 * 182.31372 * 1 2 3 27 27 H 1.08998 * 109.47481 * 302.31188 * 1 2 3 28 28 H 1.08994 * 109.46981 * 62.31486 * 1 2 3 29 29 H 1.09002 * 110.51371 * 98.54158 * 4 2 1 30 30 H 1.08994 * 110.51108 * 335.96806 * 4 2 1 31 31 H 1.09000 * 110.51039 * 118.57850 * 5 4 2 32 32 H 1.08999 * 110.50726 * 241.28208 * 5 4 2 33 33 H 1.09000 * 109.59119 * 353.41881 * 11 10 8 34 34 H 1.09001 * 109.58806 * 113.84289 * 11 10 8 35 35 H 1.08997 * 109.56483 * 185.55281 * 12 11 10 36 36 H 1.09003 * 109.35851 * 65.49981 * 12 11 10 37 37 H 1.08998 * 109.46485 * 301.22186 * 13 12 11 38 38 H 1.09003 * 109.46019 * 181.25707 * 13 12 11 39 39 H 0.97005 * 119.99920 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.58548 * 246.15393 * 24 10 8 41 41 H 1.09003 * 109.58668 * 6.58531 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0679 -0.7740 -1.2239 5 6 3.3174 -1.5083 -0.6882 6 6 3.3901 -1.0908 0.7973 7 1 4.0571 -0.2373 0.9193 8 6 3.8551 -2.2468 1.6450 9 8 3.1101 -2.7318 2.4701 10 7 5.0986 -2.7415 1.4861 11 6 6.0103 -2.1685 0.4866 12 6 6.5240 -3.2874 -0.4177 13 6 7.1462 -4.3900 0.4421 14 6 6.0830 -4.9716 1.3766 15 1 5.2563 -5.3672 0.7865 16 6 6.6885 -6.0792 2.2000 17 1 6.7038 -6.0047 3.2773 18 6 7.2229 -7.1875 1.5779 19 7 7.2038 -7.2784 0.2660 20 14 7.9740 -8.5600 2.5984 21 1 6.9433 -9.1213 3.5082 22 1 8.4741 -9.6296 1.6978 23 1 9.1013 -8.0203 3.4004 24 6 5.5664 -3.8678 2.3055 25 8 2.0369 -0.7250 1.1444 26 1 -0.3633 -1.0269 0.0415 27 1 -0.3634 0.5493 0.8685 28 1 -0.3633 0.4774 -0.9100 29 1 2.3430 -0.0840 -2.0215 30 1 1.3268 -1.4903 -1.5786 31 1 3.1930 -2.5876 -0.7760 32 1 4.2102 -1.1812 -1.2211 33 1 5.4776 -1.4309 -0.1137 34 1 6.8524 -1.6935 0.9899 35 1 7.2759 -2.8897 -1.0993 36 1 5.6933 -3.6984 -0.9913 37 1 7.9608 -3.9728 1.0340 38 1 7.5332 -5.1787 -0.2031 39 1 7.5801 -8.0580 -0.1717 40 1 6.3717 -3.5340 2.9598 41 1 4.7407 -4.2513 2.9050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397650113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -109.461692 kcal Electronic energy + Delta-G solvation = -21410.708178 eV Core-core repulsion = 18289.257883 eV Total energy + Delta-G solvation = -3121.450295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63806 -39.86989 -38.28930 -35.47674 -33.41834 -33.22751 -32.70398 -31.64216 -28.17231 -26.90621 -25.80857 -23.45757 -23.30275 -22.01980 -21.64814 -19.82767 -18.65794 -18.09591 -17.40511 -17.29523 -16.63187 -16.42520 -15.68300 -15.39511 -15.17451 -14.80742 -14.71531 -14.56829 -14.06814 -13.79249 -13.68966 -13.41295 -13.18177 -12.87594 -12.76472 -12.67287 -12.62260 -12.45649 -11.98866 -11.88991 -11.79448 -11.66417 -11.51244 -11.21780 -10.99411 -10.83366 -10.55986 -10.41962 -9.53927 -8.11673 -6.26830 1.40777 1.42508 1.49513 1.53664 1.84260 2.42459 2.95320 3.14925 3.36537 3.57551 3.84896 3.95171 4.03918 4.16158 4.24431 4.26980 4.34643 4.45206 4.51756 4.56573 4.60784 4.76072 4.79249 4.85674 4.91333 4.95274 4.99762 5.03242 5.12828 5.18379 5.27458 5.29042 5.45491 5.55020 5.60601 5.86168 5.92562 6.13527 6.33637 6.49804 6.81857 7.15397 7.41228 8.91870 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035440 B = 0.004551 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.871881 B = 6150.685297 C = 6403.773325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 H 0.097 0.903 4 C -0.142 4.142 5 C -0.145 4.145 6 C 0.066 3.934 7 H 0.127 0.873 8 C 0.503 3.497 9 O -0.590 6.590 10 N -0.600 5.600 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.042 3.958 15 H -0.015 1.015 16 C -0.542 4.542 17 H 0.051 0.949 18 C 0.019 3.981 19 N -0.912 5.912 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.267 1.267 24 C 0.129 3.871 25 O -0.385 6.385 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.694 17.833 -7.555 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 H 0.114 0.886 4 C -0.180 4.180 5 C -0.183 4.183 6 C 0.005 3.995 7 H 0.144 0.856 8 C 0.292 3.708 9 O -0.470 6.470 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.144 4.144 14 C 0.023 3.977 15 H 0.003 0.997 16 C -0.580 4.580 17 H 0.069 0.931 18 C -0.180 4.180 19 N -0.551 5.551 20 Si 0.780 3.220 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.192 1.192 24 C 0.007 3.993 25 O -0.304 6.304 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.145 17.424 -7.076 19.498 hybrid contribution 0.374 -1.550 0.703 1.742 sum -4.771 15.875 -6.374 17.759 Atomic orbital electron populations 1.21835 0.92515 1.02294 1.03642 1.23449 0.96196 0.96234 0.84152 0.88554 1.23039 0.96347 0.99985 0.98589 1.23084 1.01684 1.01188 0.92301 1.22917 0.86965 0.95337 0.94249 0.85556 1.21115 0.81201 0.84951 0.83576 1.90649 1.55215 1.62601 1.38564 1.48273 1.13261 1.33499 1.38253 1.22149 0.93781 0.96183 0.89927 1.21838 1.00593 0.96084 0.97937 1.21422 0.97658 0.97127 0.98202 1.18875 0.93841 0.91541 0.93414 0.99734 1.21416 1.39199 1.04238 0.93174 0.93101 1.25660 0.96202 1.00146 0.96000 1.69995 1.46179 1.29872 1.09007 0.85672 0.78858 0.78847 0.78641 1.20357 1.20614 1.19202 1.21598 0.97602 0.86503 0.93635 1.89290 1.26094 1.75064 1.39972 0.93543 0.92189 0.88109 0.86527 0.90929 0.92844 0.85813 0.86496 0.89601 0.88626 0.93517 0.94257 0.91849 0.92878 0.91673 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.52 71.98 0.69 -1.81 16 2 C 0.06 1.08 3.93 31.10 0.12 1.20 16 3 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 4 C -0.14 -2.29 6.62 31.61 0.21 -2.08 16 5 C -0.14 -3.04 5.52 31.61 0.17 -2.86 16 6 C 0.07 1.79 2.77 30.35 0.08 1.87 16 7 H 0.13 2.47 7.85 -2.39 -0.02 2.46 16 8 C 0.50 19.45 7.02 87.66 0.62 20.07 16 9 O -0.59 -29.31 15.96 15.34 0.24 -29.07 16 10 N -0.60 -22.24 2.98 -819.67 -2.44 -24.68 16 11 C 0.10 2.69 5.96 86.22 0.51 3.20 16 12 C -0.13 -4.04 6.06 30.53 0.19 -3.85 16 13 C -0.11 -4.68 4.96 30.62 0.15 -4.53 16 14 C 0.04 2.17 2.25 -11.45 -0.03 2.15 16 15 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 16 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C 0.02 1.07 5.30 84.65 0.45 1.52 16 19 N -0.91 -52.17 11.32 21.45 0.24 -51.93 16 20 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.13 5.87 5.66 86.38 0.49 6.36 16 25 O -0.38 -11.84 10.61 -130.60 -1.39 -13.23 16 26 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.27 7.87 -2.39 -0.02 1.25 16 31 H 0.05 1.47 7.86 -2.39 -0.02 1.45 16 32 H 0.12 1.69 6.54 -2.39 -0.02 1.67 16 33 H 0.12 2.14 3.97 -2.39 -0.01 2.13 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 3.23 6.05 -2.39 -0.01 3.21 16 39 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.05 2.43 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -74.82 318.67 3.56 -71.26 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.00 Total: 10.73 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.87 Total: -9.02 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.20 Total: -76.61 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.14 Total: -42.29 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -74.82 3.56 -71.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397650113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.201 kcal (2) G-P(sol) polarization free energy of solvation -74.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds