Wall clock time and date at job start Mon Mar 30 2020 04:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.27559 * 2 1 4 4 C 1.54946 * 110.31448 * 237.91046 * 2 1 3 5 5 C 1.55303 * 100.94243 * 204.64467 * 4 2 1 6 6 C 1.54373 * 102.25536 * 34.12697 * 5 4 2 7 7 H 1.09000 * 109.82775 * 98.25270 * 6 5 4 8 8 C 1.50705 * 109.83096 * 219.12821 * 6 5 4 9 9 O 1.21280 * 119.99552 * 115.00339 * 8 6 5 10 10 N 1.34771 * 120.00245 * 295.00650 * 8 6 5 11 11 C 1.46927 * 120.63019 * 359.71491 * 10 8 6 12 12 C 1.52763 * 109.00796 * 233.58592 * 11 10 8 13 13 C 1.53042 * 109.38444 * 305.58635 * 12 11 10 14 14 C 1.53048 * 109.53438 * 61.24404 * 13 12 11 15 15 H 1.08995 * 109.52321 * 58.60126 * 14 13 12 16 16 C 1.50698 * 109.49588 * 178.68549 * 14 13 12 17 17 H 1.07995 * 120.00104 * 119.83615 * 16 14 13 18 18 C 1.37878 * 119.99675 * 299.83606 * 16 14 13 19 19 N 1.31516 * 120.00411 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99999 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46991 * 59.99461 * 20 18 16 22 22 H 1.48495 * 109.46906 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46927 * 299.99621 * 20 18 16 24 24 C 1.46924 * 120.63170 * 180.02562 * 10 8 6 25 25 O 1.43370 * 107.61551 * 338.56468 * 6 5 4 26 26 H 1.09002 * 109.47153 * 180.69964 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.70155 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.70136 * 1 2 3 29 29 H 1.09000 * 111.11792 * 322.55883 * 4 2 1 30 30 H 1.08996 * 111.12455 * 86.71860 * 4 2 1 31 31 H 1.08999 * 110.85116 * 152.32722 * 5 4 2 32 32 H 1.09005 * 110.84143 * 275.93493 * 5 4 2 33 33 H 1.09004 * 109.58786 * 353.42082 * 11 10 8 34 34 H 1.09000 * 109.58641 * 113.84611 * 11 10 8 35 35 H 1.09005 * 109.56455 * 185.55559 * 12 11 10 36 36 H 1.08995 * 109.38476 * 65.51897 * 12 11 10 37 37 H 1.08992 * 109.46004 * 301.22318 * 13 12 11 38 38 H 1.08994 * 109.44856 * 181.25514 * 13 12 11 39 39 H 0.97001 * 120.00578 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.58793 * 246.15464 * 24 10 8 41 41 H 1.09003 * 109.58595 * 6.57584 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0679 -0.7719 -1.2311 5 6 3.4699 -1.2019 -0.7199 6 6 3.2112 -1.4426 0.7828 7 1 3.0640 -2.5068 0.9668 8 6 4.3813 -0.9416 1.5898 9 8 4.2366 -0.0112 2.3542 10 7 5.5883 -1.5273 1.4619 11 6 5.7776 -2.6592 0.5445 12 6 6.4009 -3.8233 1.3126 13 6 7.6836 -3.3496 1.9999 14 6 7.3496 -2.2357 2.9950 15 1 6.6359 -2.6064 3.7306 16 6 8.6085 -1.7921 3.6946 17 1 8.9403 -0.7678 3.6112 18 6 9.3366 -2.6941 4.4411 19 7 8.9323 -3.9414 4.5431 20 14 10.8968 -2.1441 5.3090 21 1 10.5722 -1.0609 6.2715 22 1 11.4884 -3.2938 6.0392 23 1 11.8695 -1.6404 4.3064 24 6 6.7383 -1.0504 2.2421 25 8 2.0286 -0.7157 1.1414 26 1 -0.3633 -1.0276 0.0125 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 0.5247 0.8837 29 1 1.4471 -1.6402 -1.4522 30 1 2.1497 -0.1184 -2.0995 31 1 3.7967 -2.1194 -1.2092 32 1 4.1974 -0.4033 -0.8653 33 1 4.8136 -2.9657 0.1384 34 1 6.4415 -2.3640 -0.2680 35 1 6.6363 -4.6325 0.6212 36 1 5.6961 -4.1799 2.0636 37 1 8.3785 -2.9707 1.2506 38 1 8.1411 -4.1848 2.5300 39 1 9.4443 -4.5759 5.0686 40 1 7.4823 -0.6210 1.5713 41 1 6.4079 -0.2956 2.9558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397650116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:51 Heat of formation + Delta-G solvation = -92.447070 kcal Electronic energy + Delta-G solvation = -21328.166802 eV Core-core repulsion = 18207.454316 eV Total energy + Delta-G solvation = -3120.712485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40202 -38.59522 -36.60374 -33.64734 -32.41102 -31.98070 -31.20455 -30.09170 -26.97905 -25.06574 -24.37614 -22.24289 -21.72397 -21.36584 -19.80835 -18.41665 -17.46443 -16.44134 -16.14180 -15.96376 -15.15787 -14.69607 -14.32114 -14.06800 -13.71579 -13.34047 -13.29584 -13.00026 -12.74883 -12.57888 -12.28138 -12.08756 -12.03475 -11.90818 -11.54643 -11.12346 -11.03504 -10.95334 -10.82275 -10.73750 -10.30126 -10.05755 -9.95137 -9.78637 -9.44398 -8.99869 -8.77285 -8.38312 -7.89616 -6.01688 -4.08884 2.98079 3.30956 3.31997 3.36213 3.40172 3.85570 4.28783 4.42840 4.53827 4.64576 4.92183 4.99369 5.14013 5.19918 5.28274 5.33849 5.42983 5.47026 5.51766 5.60671 5.66497 5.76559 5.80619 5.93396 6.02687 6.08368 6.31715 6.38514 6.47107 6.65429 6.78474 6.89895 7.01631 7.16518 7.32700 7.68804 7.91356 8.00944 8.07179 8.37581 8.67022 8.94556 9.55951 11.03867 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041120 B = 0.004363 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.776831 B = 6415.648630 C = 6754.591594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.150 4.150 5 C -0.146 4.146 6 C 0.067 3.933 7 H 0.103 0.897 8 C 0.496 3.504 9 O -0.535 6.535 10 N -0.601 5.601 11 C 0.107 3.893 12 C -0.137 4.137 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.117 3.883 25 O -0.349 6.349 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.261 0.739 40 H 0.055 0.945 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 1.638 -14.102 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.089 0.911 4 C -0.188 4.188 5 C -0.183 4.183 6 C 0.005 3.995 7 H 0.121 0.879 8 C 0.282 3.718 9 O -0.411 6.411 10 N -0.335 5.335 11 C -0.016 4.016 12 C -0.175 4.175 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.048 0.952 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.003 4.003 25 O -0.267 6.267 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.182 1.981 -13.396 18.215 hybrid contribution 1.089 0.077 0.296 1.131 sum -11.094 2.058 -13.100 17.289 Atomic orbital electron populations 1.21863 0.93559 1.02783 1.02388 1.23025 0.94891 0.95984 0.84729 0.91124 1.23337 0.95882 1.01014 0.98546 1.23180 0.98345 1.03491 0.93320 1.22635 0.85691 0.97145 0.93998 0.87926 1.20799 0.83905 0.83582 0.83468 1.90669 1.83574 1.28918 1.37960 1.48285 1.09721 1.32772 1.42747 1.21764 1.00259 0.87349 0.92237 1.21950 1.00337 0.95991 0.99239 1.21623 0.93594 1.02340 0.97414 1.18967 0.95643 0.90356 0.92983 0.95233 1.21040 1.08057 0.96194 1.30069 0.92529 1.24934 0.97765 0.94910 0.96161 1.69862 1.39288 1.03080 1.40561 0.86635 0.83297 0.78123 0.79816 1.20213 1.21308 1.20261 1.21991 0.84850 0.99359 0.94145 1.88568 1.39713 1.64605 1.33798 0.91904 0.91294 0.91742 0.89988 0.89715 0.88896 0.89923 0.91195 0.91837 0.92374 0.92337 0.94563 0.88632 0.92915 0.92687 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.62 37.16 0.36 -0.99 16 2 C 0.07 0.82 4.07 -25.71 -0.10 0.72 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.15 -1.32 6.57 -24.48 -0.16 -1.48 16 5 C -0.15 -1.53 5.37 -24.79 -0.13 -1.66 16 6 C 0.07 0.97 3.07 -27.16 -0.08 0.88 16 7 H 0.10 1.34 7.48 -51.93 -0.39 0.96 16 8 C 0.50 9.49 6.97 -10.99 -0.08 9.41 16 9 O -0.53 -12.56 15.93 -14.13 -0.23 -12.78 16 10 N -0.60 -11.24 2.98 -173.05 -0.52 -11.75 16 11 C 0.11 1.61 5.68 -3.93 -0.02 1.58 16 12 C -0.14 -2.39 6.06 -26.83 -0.16 -2.55 16 13 C -0.11 -2.48 4.96 -26.68 -0.13 -2.62 16 14 C 0.04 0.98 2.25 -91.67 -0.21 0.78 16 15 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.12 2.58 5.66 -3.73 -0.02 2.56 16 25 O -0.35 -5.53 10.25 -54.92 -0.56 -6.09 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.76 6.96 -51.93 -0.36 0.40 16 32 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 33 H 0.07 0.82 4.47 -51.93 -0.23 0.59 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 2.41 6.05 -51.93 -0.31 2.10 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.88 7.01 -51.93 -0.36 1.52 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -31.84 318.98 -8.70 -40.55 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.68 Total: -0.45 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.14 Total: -6.05 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.11 Total: -36.15 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.79 Total: -18.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.84 -8.70 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397650116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.899 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds