Wall clock time and date at job start Mon Mar 30 2020 04:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.27559 * 2 1 4 4 C 1.54946 * 110.31448 * 237.91046 * 2 1 3 5 5 C 1.55303 * 100.94243 * 204.64467 * 4 2 1 6 6 C 1.54373 * 102.25536 * 34.12697 * 5 4 2 7 7 H 1.09000 * 109.82775 * 98.25270 * 6 5 4 8 8 C 1.50705 * 109.83096 * 219.12821 * 6 5 4 9 9 O 1.21280 * 119.99552 * 115.00339 * 8 6 5 10 10 N 1.34771 * 120.00245 * 295.00650 * 8 6 5 11 11 C 1.46927 * 120.63019 * 359.71491 * 10 8 6 12 12 C 1.52763 * 109.00796 * 233.58592 * 11 10 8 13 13 C 1.53042 * 109.38444 * 305.58635 * 12 11 10 14 14 C 1.53048 * 109.53438 * 61.24404 * 13 12 11 15 15 H 1.08995 * 109.52321 * 58.60126 * 14 13 12 16 16 C 1.50698 * 109.49588 * 178.68549 * 14 13 12 17 17 H 1.07995 * 120.00104 * 119.83615 * 16 14 13 18 18 C 1.37878 * 119.99675 * 299.83606 * 16 14 13 19 19 N 1.31516 * 120.00411 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99999 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46991 * 59.99461 * 20 18 16 22 22 H 1.48495 * 109.46906 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46927 * 299.99621 * 20 18 16 24 24 C 1.46924 * 120.63170 * 180.02562 * 10 8 6 25 25 O 1.43370 * 107.61551 * 338.56468 * 6 5 4 26 26 H 1.09002 * 109.47153 * 180.69964 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.70155 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.70136 * 1 2 3 29 29 H 1.09000 * 111.11792 * 322.55883 * 4 2 1 30 30 H 1.08996 * 111.12455 * 86.71860 * 4 2 1 31 31 H 1.08999 * 110.85116 * 152.32722 * 5 4 2 32 32 H 1.09005 * 110.84143 * 275.93493 * 5 4 2 33 33 H 1.09004 * 109.58786 * 353.42082 * 11 10 8 34 34 H 1.09000 * 109.58641 * 113.84611 * 11 10 8 35 35 H 1.09005 * 109.56455 * 185.55559 * 12 11 10 36 36 H 1.08995 * 109.38476 * 65.51897 * 12 11 10 37 37 H 1.08992 * 109.46004 * 301.22318 * 13 12 11 38 38 H 1.08994 * 109.44856 * 181.25514 * 13 12 11 39 39 H 0.97001 * 120.00578 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.58793 * 246.15464 * 24 10 8 41 41 H 1.09003 * 109.58595 * 6.57584 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0679 -0.7719 -1.2311 5 6 3.4699 -1.2019 -0.7199 6 6 3.2112 -1.4426 0.7828 7 1 3.0640 -2.5068 0.9668 8 6 4.3813 -0.9416 1.5898 9 8 4.2366 -0.0112 2.3542 10 7 5.5883 -1.5273 1.4619 11 6 5.7776 -2.6592 0.5445 12 6 6.4009 -3.8233 1.3126 13 6 7.6836 -3.3496 1.9999 14 6 7.3496 -2.2357 2.9950 15 1 6.6359 -2.6064 3.7306 16 6 8.6085 -1.7921 3.6946 17 1 8.9403 -0.7678 3.6112 18 6 9.3366 -2.6941 4.4411 19 7 8.9323 -3.9414 4.5431 20 14 10.8968 -2.1441 5.3090 21 1 10.5722 -1.0609 6.2715 22 1 11.4884 -3.2938 6.0392 23 1 11.8695 -1.6404 4.3064 24 6 6.7383 -1.0504 2.2421 25 8 2.0286 -0.7157 1.1414 26 1 -0.3633 -1.0276 0.0125 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 0.5247 0.8837 29 1 1.4471 -1.6402 -1.4522 30 1 2.1497 -0.1184 -2.0995 31 1 3.7967 -2.1194 -1.2092 32 1 4.1974 -0.4033 -0.8653 33 1 4.8136 -2.9657 0.1384 34 1 6.4415 -2.3640 -0.2680 35 1 6.6363 -4.6325 0.6212 36 1 5.6961 -4.1799 2.0636 37 1 8.3785 -2.9707 1.2506 38 1 8.1411 -4.1848 2.5300 39 1 9.4443 -4.5759 5.0686 40 1 7.4823 -0.6210 1.5713 41 1 6.4079 -0.2956 2.9558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397650116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:50 Heat of formation + Delta-G solvation = -112.355008 kcal Electronic energy + Delta-G solvation = -21329.030075 eV Core-core repulsion = 18207.454316 eV Total energy + Delta-G solvation = -3121.575758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66610 -39.87076 -38.23779 -35.47485 -33.48441 -33.23701 -32.63124 -31.69051 -28.14099 -26.90278 -25.82269 -23.39077 -23.22191 -22.28339 -21.37073 -19.90832 -18.77205 -18.28816 -17.41580 -17.09249 -16.68576 -16.54032 -15.65417 -15.22001 -15.11868 -14.89464 -14.63399 -14.32986 -14.17019 -13.80369 -13.59596 -13.41598 -13.01445 -12.93664 -12.83514 -12.68458 -12.64101 -12.53731 -12.00090 -11.87943 -11.86270 -11.71224 -11.56317 -11.26075 -11.15042 -10.83929 -10.45765 -10.24685 -9.52238 -8.11837 -6.27416 1.40310 1.42310 1.49401 1.55658 1.95940 2.42222 2.84546 3.14495 3.36888 3.54232 3.76757 4.01953 4.04592 4.16220 4.24378 4.31538 4.36584 4.46184 4.52777 4.58924 4.69733 4.74533 4.78941 4.85712 4.88659 4.94999 5.01169 5.03088 5.11558 5.21911 5.28016 5.31933 5.46182 5.55383 5.60065 5.92065 5.97735 6.13638 6.33104 6.53155 6.81670 7.18778 7.40711 8.91706 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041120 B = 0.004363 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.776831 B = 6415.648630 C = 6754.591594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 H 0.054 0.946 4 C -0.135 4.135 5 C -0.141 4.141 6 C 0.069 3.931 7 H 0.124 0.876 8 C 0.486 3.514 9 O -0.593 6.593 10 N -0.602 5.602 11 C 0.106 3.894 12 C -0.130 4.130 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.018 1.018 16 C -0.541 4.541 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.956 3.044 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.266 1.266 24 C 0.129 3.871 25 O -0.384 6.384 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 0.731 -17.279 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.002 4.002 3 H 0.072 0.928 4 C -0.172 4.172 5 C -0.178 4.178 6 C 0.008 3.992 7 H 0.141 0.859 8 C 0.275 3.725 9 O -0.474 6.474 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.168 4.168 13 C -0.143 4.143 14 C 0.021 3.979 15 H 0.001 0.999 16 C -0.580 4.580 17 H 0.070 0.930 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.781 3.219 21 H -0.203 1.203 22 H -0.206 1.206 23 H -0.191 1.191 24 C 0.007 3.993 25 O -0.303 6.303 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.786 1.053 -16.612 20.990 hybrid contribution 1.250 0.390 1.347 1.879 sum -11.536 1.443 -15.266 19.189 Atomic orbital electron populations 1.21860 0.91800 1.03372 1.03034 1.23336 0.96356 0.95356 0.85181 0.92809 1.23338 0.94565 1.01740 0.97571 1.23264 0.99379 1.04992 0.90193 1.22781 0.83258 0.97454 0.95705 0.85902 1.21905 0.84957 0.82664 0.82997 1.90631 1.84517 1.31655 1.40582 1.48354 1.08747 1.33704 1.42634 1.22082 1.03129 0.84813 0.91457 1.21876 0.97356 0.98068 0.99531 1.21415 0.96186 0.99953 0.96776 1.18875 0.93778 0.92262 0.92953 0.99947 1.21414 1.09287 0.96159 1.31124 0.93039 1.25690 1.00736 0.94962 0.96759 1.70000 1.40335 1.03883 1.40925 0.85653 0.79768 0.77696 0.78784 1.20341 1.20648 1.19098 1.21547 0.86277 0.97475 0.94036 1.88550 1.39974 1.65141 1.36624 0.91216 0.88550 0.93298 0.87758 0.87347 0.85266 0.90919 0.86734 0.89211 0.88609 0.93936 0.94086 0.91957 0.92877 0.91663 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.62 71.98 0.69 -1.62 16 2 C 0.05 1.17 4.07 31.26 0.13 1.30 16 3 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.13 -1.78 6.57 32.05 0.21 -1.57 16 5 C -0.14 -2.38 5.37 31.85 0.17 -2.21 16 6 C 0.07 1.87 3.07 30.32 0.09 1.96 16 7 H 0.12 2.81 7.48 -2.39 -0.02 2.79 16 8 C 0.49 18.68 6.97 87.66 0.61 19.29 16 9 O -0.59 -29.29 15.93 15.79 0.25 -29.04 16 10 N -0.60 -22.22 2.98 -819.82 -2.44 -24.67 16 11 C 0.11 2.83 5.68 86.22 0.49 3.32 16 12 C -0.13 -4.27 6.06 30.53 0.19 -4.08 16 13 C -0.11 -4.70 4.96 30.62 0.15 -4.54 16 14 C 0.04 2.09 2.25 -11.47 -0.03 2.07 16 15 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 16 C -0.54 -30.61 8.56 25.60 0.22 -30.39 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C 0.02 1.00 5.30 84.65 0.45 1.45 16 19 N -0.91 -52.75 11.32 21.45 0.24 -52.50 16 20 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.13 5.89 5.66 86.35 0.49 6.37 16 25 O -0.38 -11.94 10.25 -130.16 -1.33 -13.27 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.10 0.98 8.06 -2.39 -0.02 0.96 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.13 1.27 6.96 -2.39 -0.02 1.25 16 32 H 0.07 1.41 7.84 -2.38 -0.02 1.39 16 33 H 0.11 2.08 4.47 -2.38 -0.01 2.07 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 3.21 6.05 -2.39 -0.01 3.20 16 39 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.05 2.35 7.01 -2.39 -0.02 2.34 16 Total: -1.00 -75.67 318.98 3.61 -72.07 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.00 Total: 9.96 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 3.86 Total: -8.67 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -2.20 Total: -77.17 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.08 Total: -42.32 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.67 3.61 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397650116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.289 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds