Wall clock time and date at job start Mon Mar 30 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.57152 * 2 1 4 4 C 1.53092 * 109.51993 * 120.15247 * 2 1 3 5 5 O 1.42905 * 109.41139 * 177.51528 * 4 2 1 6 6 C 1.42905 * 114.09989 * 298.84204 * 5 4 2 7 7 C 1.53093 * 109.41308 * 61.16135 * 6 5 4 8 8 C 1.53170 * 109.52568 * 239.84245 * 2 1 3 9 9 H 1.09005 * 109.61682 * 303.02659 * 8 2 1 10 10 C 1.50698 * 109.54488 * 63.24571 * 8 2 1 11 11 O 1.21280 * 120.00288 * 35.65862 * 10 8 2 12 12 N 1.34778 * 120.00180 * 215.66379 * 10 8 2 13 13 C 1.46504 * 120.00271 * 176.50187 * 12 10 8 14 14 C 1.52992 * 109.47155 * 185.12424 * 13 12 10 15 15 C 1.50705 * 115.54846 * 279.84503 * 14 13 12 16 16 H 1.08002 * 119.99809 * 113.83716 * 15 14 13 17 17 C 1.37879 * 120.00237 * 293.83426 * 15 14 13 18 18 N 1.31511 * 119.99919 * 357.84739 * 17 15 14 19 19 Si 1.86799 * 119.99982 * 177.84168 * 17 15 14 20 20 H 1.48500 * 109.46939 * 60.00109 * 19 17 15 21 21 H 1.48497 * 109.46929 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47068 * 300.00476 * 19 17 15 23 23 C 1.52997 * 117.49755 * 134.14366 * 14 13 12 24 24 C 1.52993 * 117.50210 * 65.52147 * 14 13 12 25 25 H 1.08997 * 109.46956 * 180.15817 * 1 2 3 26 26 H 1.09007 * 109.47382 * 300.16115 * 1 2 3 27 27 H 1.09003 * 109.47242 * 60.15765 * 1 2 3 28 28 H 1.08996 * 109.47757 * 57.54041 * 4 2 1 29 29 H 1.09000 * 109.49393 * 297.50075 * 4 2 1 30 30 H 1.08998 * 109.48155 * 301.17924 * 6 5 4 31 31 H 1.08997 * 109.49290 * 181.14788 * 6 5 4 32 32 H 1.08996 * 109.52321 * 182.48418 * 7 6 5 33 33 H 1.08997 * 109.57734 * 62.32773 * 7 6 5 34 34 H 0.97004 * 120.00071 * 356.49970 * 12 10 8 35 35 H 1.09004 * 109.46536 * 65.12360 * 13 12 10 36 36 H 1.09001 * 109.46906 * 305.12740 * 13 12 10 37 37 H 0.97001 * 119.99889 * 185.02466 * 18 17 15 38 38 H 1.09003 * 117.49976 * 359.97438 * 23 14 13 39 39 H 1.09001 * 117.50097 * 145.02305 * 23 14 13 40 40 H 1.09006 * 117.50068 * 214.97935 * 24 14 13 41 41 H 1.09007 * 117.49895 * 359.97025 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 3.4694 -0.7742 1.2164 6 6 4.0044 -1.4816 0.0958 7 6 3.5717 -0.7871 -1.1981 8 6 2.0419 -0.7252 -1.2482 9 1 1.6368 -1.7368 -1.2757 10 6 1.6079 0.0252 -2.4809 11 8 1.5586 1.2369 -2.4673 12 7 1.2744 -0.6502 -3.5985 13 6 0.7793 0.0740 -4.7719 14 6 0.3561 -0.9275 -5.8482 15 6 1.4760 -1.5057 -6.6744 16 1 1.7115 -2.5574 -6.6042 17 6 2.2000 -0.6921 -7.5200 18 7 1.8861 0.5795 -7.6374 19 14 3.6268 -1.3962 -8.4988 20 1 3.1326 -2.4827 -9.3822 21 1 4.2367 -0.3240 -9.3255 22 1 4.6456 -1.9415 -7.5660 23 6 -0.9865 -0.6923 -6.5433 24 6 -0.8352 -1.8362 -5.5385 25 1 -0.3633 -1.0276 0.0028 26 1 -0.3634 0.5164 0.8886 27 1 -0.3634 0.5114 -0.8914 28 1 1.6432 -1.7391 1.2677 29 1 1.7159 -0.1885 2.1390 30 1 3.6316 -2.5058 0.1009 31 1 5.0926 -1.4905 0.1572 32 1 3.9417 -1.3500 -2.0549 33 1 3.9781 0.2239 -1.2235 34 1 1.3621 -1.6159 -3.6260 35 1 1.5692 0.7154 -5.1628 36 1 -0.0773 0.6849 -4.4870 37 1 2.3471 1.1351 -8.2853 38 1 -1.5684 0.1757 -6.2334 39 1 -1.0600 -0.9558 -7.5984 40 1 -0.8092 -2.8522 -5.9326 41 1 -1.3172 -1.7208 -4.5676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404077693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:43 Heat of formation + Delta-G solvation = -80.958358 kcal Electronic energy + Delta-G solvation = -21155.126347 eV Core-core repulsion = 18034.912050 eV Total energy + Delta-G solvation = -3120.214297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18641 -38.36866 -36.72605 -34.25804 -33.27047 -32.14843 -32.06689 -27.45145 -26.52743 -25.64130 -24.56818 -22.34127 -21.36365 -20.59257 -19.56541 -19.16259 -17.12888 -16.26337 -16.06502 -15.80711 -15.01452 -14.80501 -14.68237 -14.51099 -14.02477 -13.89278 -13.53376 -12.97518 -12.57249 -12.52152 -12.16586 -12.02210 -11.67004 -11.56346 -11.45844 -11.05235 -10.97748 -10.93385 -10.59551 -10.57004 -10.41003 -10.34897 -9.80005 -9.66055 -9.08188 -9.03004 -8.64594 -8.28054 -8.10256 -6.11424 -4.19877 3.17731 3.24523 3.31217 3.31713 3.74318 3.87048 4.32345 4.60333 4.74737 4.83819 4.91792 5.11211 5.14467 5.28255 5.33905 5.36194 5.49537 5.51699 5.59034 5.60985 5.75733 5.80119 5.96293 6.05159 6.11312 6.22777 6.27195 6.35127 6.43159 6.57851 6.61728 6.89382 7.02094 7.09619 7.25538 7.37757 7.49991 7.80605 8.28634 8.29999 8.79248 8.89603 9.46214 10.96373 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.005258 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.256098 B = 5323.928613 C = 6030.404135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 H 0.092 0.908 4 C 0.068 3.932 5 O -0.384 6.384 6 C 0.064 3.936 7 C -0.146 4.146 8 C -0.103 4.103 9 H 0.085 0.915 10 C 0.511 3.489 11 O -0.553 6.553 12 N -0.707 5.707 13 C 0.161 3.839 14 C 0.035 3.965 15 C -0.500 4.500 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.876 5.876 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.166 4.166 24 C -0.208 4.208 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -5.115 14.015 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 H 0.110 0.890 4 C -0.009 4.009 5 O -0.303 6.303 6 C -0.013 4.013 7 C -0.184 4.184 8 C -0.125 4.125 9 H 0.104 0.896 10 C 0.296 3.704 11 O -0.431 6.431 12 N -0.355 5.355 13 C 0.039 3.961 14 C 0.034 3.966 15 C -0.537 4.537 16 H 0.078 0.922 17 C -0.132 4.132 18 N -0.512 5.512 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.205 4.205 24 C -0.245 4.245 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.068 -3.953 14.074 14.619 hybrid contribution 0.502 -0.909 -1.094 1.508 sum 0.570 -4.862 12.981 13.873 Atomic orbital electron populations 1.21768 0.94271 1.01729 1.02659 1.21635 0.96526 1.01386 0.93373 0.88989 1.22671 0.80915 0.99514 0.97827 1.87919 1.20408 1.76501 1.45423 1.22578 0.99145 0.94383 0.85152 1.22147 0.93920 1.03298 0.99029 1.21387 0.97018 1.00079 0.94014 0.89622 1.20312 0.77658 0.88112 0.84359 1.90655 1.54113 1.14024 1.84347 1.46158 1.64822 1.11018 1.13498 1.21020 0.98363 0.93990 0.82763 1.19067 0.87745 0.94787 0.94994 1.20393 1.14572 0.94559 1.24186 0.92194 1.24986 0.96936 0.94626 0.96619 1.69931 1.41791 1.05214 1.34242 0.86666 0.82665 0.78666 0.80054 1.20233 1.21193 1.20168 1.22704 1.03236 0.97556 0.96988 1.22887 1.07048 0.95687 0.98903 0.92754 0.92363 0.91710 0.93177 0.88764 0.93028 0.88614 0.90029 0.90158 0.76966 0.89753 0.94492 0.92650 0.91636 0.90018 0.90390 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.99 37.16 0.33 -1.42 16 2 C -0.11 -1.41 2.14 -90.48 -0.19 -1.60 16 3 H 0.09 1.38 7.76 -51.93 -0.40 0.98 16 4 C 0.07 0.72 6.13 37.21 0.23 0.95 16 5 O -0.38 -4.74 10.77 -35.23 -0.38 -5.12 16 6 C 0.06 0.69 6.84 37.21 0.25 0.94 16 7 C -0.15 -1.86 5.41 -26.59 -0.14 -2.01 16 8 C -0.10 -1.42 2.10 -91.59 -0.19 -1.61 16 9 H 0.09 1.01 8.12 -51.93 -0.42 0.58 16 10 C 0.51 9.38 5.83 -10.99 -0.06 9.32 16 11 O -0.55 -12.32 15.96 5.56 0.09 -12.23 16 12 N -0.71 -13.51 5.52 -60.29 -0.33 -13.85 16 13 C 0.16 3.71 5.46 -4.04 -0.02 3.69 16 14 C 0.03 0.81 1.30 -155.67 -0.20 0.61 16 15 C -0.50 -12.80 8.83 -34.44 -0.30 -13.10 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.07 1.91 5.33 -17.82 -0.10 1.82 16 18 N -0.88 -24.31 12.32 55.43 0.68 -23.63 16 19 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.17 -3.72 9.88 -26.74 -0.26 -3.98 16 24 C -0.21 -4.19 9.92 -26.74 -0.27 -4.45 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.95 7.12 -51.93 -0.37 0.58 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.40 6.80 8.46 -40.82 -0.35 6.46 16 35 H 0.08 2.27 7.09 -51.93 -0.37 1.90 16 36 H 0.04 0.86 7.95 -51.93 -0.41 0.45 16 37 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 38 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 39 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -29.59 333.87 -7.80 -37.39 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.94 Total: 7.81 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.93 Total: -10.85 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.35 Total: -37.47 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.29 Total: -17.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.59 -7.80 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404077693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.570 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds