Wall clock time and date at job start Mon Mar 30 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.57152 * 2 1 4 4 C 1.53092 * 109.51993 * 120.15247 * 2 1 3 5 5 O 1.42905 * 109.41139 * 177.51528 * 4 2 1 6 6 C 1.42905 * 114.09989 * 298.84204 * 5 4 2 7 7 C 1.53093 * 109.41308 * 61.16135 * 6 5 4 8 8 C 1.53170 * 109.52568 * 239.84245 * 2 1 3 9 9 H 1.09005 * 109.61682 * 303.02659 * 8 2 1 10 10 C 1.50698 * 109.54488 * 63.24571 * 8 2 1 11 11 O 1.21280 * 120.00288 * 35.65862 * 10 8 2 12 12 N 1.34778 * 120.00180 * 215.66379 * 10 8 2 13 13 C 1.46504 * 120.00271 * 176.50187 * 12 10 8 14 14 C 1.52992 * 109.47155 * 185.12424 * 13 12 10 15 15 C 1.50705 * 115.54846 * 279.84503 * 14 13 12 16 16 H 1.08002 * 119.99809 * 113.83716 * 15 14 13 17 17 C 1.37879 * 120.00237 * 293.83426 * 15 14 13 18 18 N 1.31511 * 119.99919 * 357.84739 * 17 15 14 19 19 Si 1.86799 * 119.99982 * 177.84168 * 17 15 14 20 20 H 1.48500 * 109.46939 * 60.00109 * 19 17 15 21 21 H 1.48497 * 109.46929 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47068 * 300.00476 * 19 17 15 23 23 C 1.52997 * 117.49755 * 134.14366 * 14 13 12 24 24 C 1.52993 * 117.50210 * 65.52147 * 14 13 12 25 25 H 1.08997 * 109.46956 * 180.15817 * 1 2 3 26 26 H 1.09007 * 109.47382 * 300.16115 * 1 2 3 27 27 H 1.09003 * 109.47242 * 60.15765 * 1 2 3 28 28 H 1.08996 * 109.47757 * 57.54041 * 4 2 1 29 29 H 1.09000 * 109.49393 * 297.50075 * 4 2 1 30 30 H 1.08998 * 109.48155 * 301.17924 * 6 5 4 31 31 H 1.08997 * 109.49290 * 181.14788 * 6 5 4 32 32 H 1.08996 * 109.52321 * 182.48418 * 7 6 5 33 33 H 1.08997 * 109.57734 * 62.32773 * 7 6 5 34 34 H 0.97004 * 120.00071 * 356.49970 * 12 10 8 35 35 H 1.09004 * 109.46536 * 65.12360 * 13 12 10 36 36 H 1.09001 * 109.46906 * 305.12740 * 13 12 10 37 37 H 0.97001 * 119.99889 * 185.02466 * 18 17 15 38 38 H 1.09003 * 117.49976 * 359.97438 * 23 14 13 39 39 H 1.09001 * 117.50097 * 145.02305 * 23 14 13 40 40 H 1.09006 * 117.50068 * 214.97935 * 24 14 13 41 41 H 1.09007 * 117.49895 * 359.97025 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 3.4694 -0.7742 1.2164 6 6 4.0044 -1.4816 0.0958 7 6 3.5717 -0.7871 -1.1981 8 6 2.0419 -0.7252 -1.2482 9 1 1.6368 -1.7368 -1.2757 10 6 1.6079 0.0252 -2.4809 11 8 1.5586 1.2369 -2.4673 12 7 1.2744 -0.6502 -3.5985 13 6 0.7793 0.0740 -4.7719 14 6 0.3561 -0.9275 -5.8482 15 6 1.4760 -1.5057 -6.6744 16 1 1.7115 -2.5574 -6.6042 17 6 2.2000 -0.6921 -7.5200 18 7 1.8861 0.5795 -7.6374 19 14 3.6268 -1.3962 -8.4988 20 1 3.1326 -2.4827 -9.3822 21 1 4.2367 -0.3240 -9.3255 22 1 4.6456 -1.9415 -7.5660 23 6 -0.9865 -0.6923 -6.5433 24 6 -0.8352 -1.8362 -5.5385 25 1 -0.3633 -1.0276 0.0028 26 1 -0.3634 0.5164 0.8886 27 1 -0.3634 0.5114 -0.8914 28 1 1.6432 -1.7391 1.2677 29 1 1.7159 -0.1885 2.1390 30 1 3.6316 -2.5058 0.1009 31 1 5.0926 -1.4905 0.1572 32 1 3.9417 -1.3500 -2.0549 33 1 3.9781 0.2239 -1.2235 34 1 1.3621 -1.6159 -3.6260 35 1 1.5692 0.7154 -5.1628 36 1 -0.0773 0.6849 -4.4870 37 1 2.3471 1.1351 -8.2853 38 1 -1.5684 0.1757 -6.2334 39 1 -1.0600 -0.9558 -7.5984 40 1 -0.8092 -2.8522 -5.9326 41 1 -1.3172 -1.7208 -4.5676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404077693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:43 Heat of formation + Delta-G solvation = -100.128674 kcal Electronic energy + Delta-G solvation = -21155.957634 eV Core-core repulsion = 18034.912050 eV Total energy + Delta-G solvation = -3121.045585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42346 -39.65624 -38.44092 -35.32738 -34.92235 -34.07143 -33.11971 -28.80200 -27.79811 -27.30242 -25.95908 -23.28862 -23.06053 -21.85468 -21.26677 -20.61190 -18.63183 -17.81821 -17.15774 -16.99619 -16.70092 -16.23963 -16.15443 -15.58623 -15.50370 -15.25428 -14.84997 -14.53210 -14.02820 -13.78529 -13.50982 -13.27513 -13.04315 -12.99514 -12.96416 -12.77964 -12.45861 -12.38231 -12.07558 -11.94484 -11.60383 -11.48602 -11.40851 -10.90946 -10.89903 -10.55937 -10.40844 -10.04456 -9.84967 -8.12205 -6.25374 1.42310 1.43358 1.50363 1.70433 2.33433 2.41328 2.99138 3.13912 3.49010 3.57721 3.75469 3.77448 3.93020 4.20149 4.27068 4.28531 4.45955 4.48235 4.53379 4.58944 4.62965 4.66354 4.75372 4.75754 4.82748 4.92344 4.94832 5.03543 5.09187 5.14798 5.23973 5.25922 5.34262 5.55270 5.56501 5.67381 5.80827 6.27423 6.34174 6.74415 6.83887 7.39447 7.43776 8.95089 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.005258 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.256098 B = 5323.928613 C = 6030.404135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.058 0.942 4 C 0.071 3.929 5 O -0.402 6.402 6 C 0.067 3.933 7 C -0.145 4.145 8 C -0.096 4.096 9 H 0.118 0.882 10 C 0.508 3.492 11 O -0.598 6.598 12 N -0.701 5.701 13 C 0.179 3.821 14 C 0.008 3.992 15 C -0.503 4.503 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.911 5.911 19 Si 0.950 3.050 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.270 1.270 23 C -0.179 4.179 24 C -0.169 4.169 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.037 0.963 36 H 0.025 0.975 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -8.013 15.753 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.077 0.923 4 C -0.005 4.005 5 O -0.320 6.320 6 C -0.009 4.009 7 C -0.184 4.184 8 C -0.117 4.117 9 H 0.136 0.864 10 C 0.296 3.704 11 O -0.480 6.480 12 N -0.350 5.350 13 C 0.055 3.945 14 C 0.008 3.992 15 C -0.541 4.541 16 H 0.083 0.917 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.195 1.195 23 C -0.217 4.217 24 C -0.206 4.206 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.245 0.755 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.054 -6.899 15.827 17.265 hybrid contribution 0.477 0.031 -1.627 1.695 sum 0.531 -6.868 14.200 15.783 Atomic orbital electron populations 1.21737 0.93530 1.02951 1.01805 1.21627 0.97147 0.99852 0.94185 0.92333 1.22763 0.80183 1.00767 0.96823 1.87909 1.21345 1.76981 1.45810 1.22681 1.00127 0.94962 0.83121 1.22170 0.93003 1.02204 1.00986 1.21456 0.97795 1.00901 0.91554 0.86384 1.21228 0.76118 0.87791 0.85263 1.90633 1.55761 1.16434 1.85164 1.46036 1.64809 1.11461 1.12693 1.20502 0.96287 0.93670 0.84029 1.19064 0.88096 0.96490 0.95588 1.20728 1.14889 0.94691 1.23798 0.91741 1.25724 0.99258 0.94858 0.97945 1.70076 1.43204 1.06480 1.35081 0.85731 0.79940 0.77885 0.78810 1.19330 1.21831 1.19463 1.22673 1.02953 0.99203 0.96901 1.22896 1.03504 0.95185 0.99050 0.90413 0.90638 0.95171 0.90548 0.87272 0.90409 0.87230 0.89574 0.92977 0.75483 0.94433 0.95620 0.93179 0.91345 0.91401 0.89160 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.99 71.98 0.65 -2.50 16 2 C -0.11 -2.62 2.14 -10.71 -0.02 -2.65 16 3 H 0.06 1.80 7.76 -2.39 -0.02 1.78 16 4 C 0.07 1.28 6.13 72.01 0.44 1.73 16 5 O -0.40 -8.82 10.77 -148.98 -1.60 -10.42 16 6 C 0.07 1.24 6.84 72.01 0.49 1.73 16 7 C -0.15 -3.52 5.41 30.68 0.17 -3.36 16 8 C -0.10 -2.47 2.10 -11.42 -0.02 -2.50 16 9 H 0.12 2.31 8.12 -2.38 -0.02 2.29 16 10 C 0.51 18.82 5.83 87.66 0.51 19.33 16 11 O -0.60 -27.92 15.96 -3.03 -0.05 -27.97 16 12 N -0.70 -26.63 5.52 -463.06 -2.55 -29.18 16 13 C 0.18 8.46 5.46 86.38 0.47 8.93 16 14 C 0.01 0.39 1.30 -52.93 -0.07 0.32 16 15 C -0.50 -25.62 8.83 25.60 0.23 -25.39 16 16 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.02 1.20 5.33 84.66 0.45 1.65 16 18 N -0.91 -52.12 12.32 21.45 0.26 -51.85 16 19 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.18 -7.96 9.88 30.59 0.30 -7.66 16 24 C -0.17 -6.43 9.92 30.59 0.30 -6.13 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.03 0.86 7.12 -2.39 -0.02 0.85 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 13.33 8.46 -92.71 -0.78 12.55 16 35 H 0.04 2.12 7.09 -2.38 -0.02 2.10 16 36 H 0.03 1.24 7.95 -2.39 -0.02 1.22 16 37 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 38 H 0.07 2.95 8.08 -2.39 -0.02 2.93 16 39 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 41 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -66.59 333.87 2.20 -64.39 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.22 Total: 27.38 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 3.90 Total: -16.50 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.29 Total: -81.04 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.65 Total: -38.39 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.59 2.20 -64.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404077693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.738 kcal (2) G-P(sol) polarization free energy of solvation -66.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds