Wall clock time and date at job start Mon Mar 30 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50707 * 109.47009 * 184.99986 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99791 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47123 * 89.99841 * 9 7 5 11 11 H 1.48501 * 109.47190 * 209.99451 * 9 7 5 12 12 H 1.48491 * 109.47113 * 329.99424 * 9 7 5 13 13 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 14 14 C 1.47010 * 110.99939 * 296.36564 * 13 2 1 15 15 C 1.53094 * 109.26035 * 182.39495 * 14 13 2 16 16 O 1.43021 * 109.25812 * 303.15441 * 15 14 13 17 17 C 1.43015 * 113.73808 * 58.66338 * 16 15 14 18 18 H 1.08998 * 109.50321 * 61.27214 * 17 16 15 19 19 C 1.50705 * 109.50337 * 181.39576 * 17 16 15 20 20 O 1.20754 * 120.00189 * 19.78716 * 19 17 16 21 21 C 1.50703 * 119.99736 * 199.78332 * 19 17 16 22 22 C 1.52995 * 117.49730 * 223.74929 * 21 19 17 23 23 C 1.52993 * 117.49670 * 155.08872 * 21 19 17 24 24 C 1.47012 * 111.00400 * 60.00363 * 13 2 1 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 29 29 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 30 30 H 0.97003 * 120.00323 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.50977 * 302.33110 * 14 13 2 32 32 H 1.09002 * 109.51165 * 62.45967 * 14 13 2 33 33 H 1.09004 * 109.51102 * 183.21684 * 15 14 13 34 34 H 1.09006 * 109.51014 * 63.08361 * 15 14 13 35 35 H 1.09002 * 115.54692 * 9.42117 * 21 19 17 36 36 H 1.08997 * 117.50210 * 0.02562 * 22 21 19 37 37 H 1.09002 * 117.49771 * 145.02350 * 22 21 19 38 38 H 1.09001 * 117.49828 * 214.98072 * 23 21 19 39 39 H 1.09001 * 117.50097 * 359.97438 * 23 21 19 40 40 H 1.09000 * 109.50441 * 297.54467 * 24 13 2 41 41 H 1.08999 * 109.50497 * 57.66692 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3129 6 1 4.0790 -0.0862 0.5393 7 6 4.2304 -1.1935 2.3579 8 7 3.5764 -1.8377 3.2996 9 14 6.0920 -1.0611 2.4370 10 1 6.4697 0.1611 3.1913 11 1 6.6446 -2.2566 3.1230 12 1 6.6416 -0.9825 1.0598 13 7 2.0197 -0.6925 -1.1994 14 6 1.6206 -2.1074 -1.1906 15 6 2.2006 -2.8033 -2.4248 16 8 1.7571 -2.1229 -3.6020 17 6 2.1290 -0.7426 -3.6438 18 1 3.2157 -0.6581 -3.6331 19 6 1.5869 -0.1133 -4.9013 20 8 0.6749 -0.6376 -5.4942 21 6 2.1828 1.1706 -5.4187 22 6 1.2163 2.2543 -5.9004 23 6 2.0444 1.4612 -6.9144 24 6 1.5484 -0.0259 -2.4220 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 4.0607 -2.2445 4.0351 31 1 2.0018 -2.5875 -0.2893 32 1 0.5331 -2.1790 -1.2098 33 1 1.8602 -3.8385 -2.4526 34 1 3.2894 -2.7786 -2.3787 35 1 3.0987 1.4961 -4.9253 36 1 0.1494 2.0390 -5.8427 37 1 1.4964 3.2929 -5.7243 38 1 2.8691 1.9783 -7.4050 39 1 1.5227 0.7237 -7.5243 40 1 0.4598 -0.0642 -2.4609 41 1 1.8768 1.0134 -2.4195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411548282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:10 Heat of formation + Delta-G solvation = -49.115976 kcal Electronic energy + Delta-G solvation = -21207.420171 eV Core-core repulsion = 18088.586662 eV Total energy + Delta-G solvation = -3118.833508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37442 -38.92013 -36.52965 -36.03536 -32.89063 -31.56563 -30.74336 -27.66106 -27.00284 -24.86091 -23.58636 -22.97389 -22.69570 -20.99199 -19.45324 -18.74483 -16.99857 -16.50669 -16.21191 -15.77233 -15.20468 -14.88705 -14.70212 -14.54714 -14.33527 -13.89891 -13.46897 -13.24864 -12.99130 -12.46290 -12.23592 -11.87322 -11.81690 -11.67359 -11.45024 -11.19983 -10.92265 -10.87807 -10.74912 -10.67761 -10.48872 -10.32862 -10.01679 -9.57682 -9.49206 -9.13733 -9.03070 -8.32408 -7.66188 -5.95339 -3.94275 1.72656 3.31952 3.34579 3.41407 3.45400 3.59008 4.20596 4.49946 4.50625 4.53164 4.65262 4.83745 5.05765 5.13287 5.22407 5.33754 5.40208 5.42509 5.54681 5.59535 5.66149 5.70065 5.73641 5.81496 5.82802 5.88958 5.94617 6.00103 6.25401 6.33150 6.53504 6.63349 6.86005 7.19980 7.40316 7.50790 7.55159 7.76425 7.87576 8.05132 8.49205 9.12078 9.68324 11.16368 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.004857 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.558067 B = 5763.420625 C = 5972.641479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.073 0.927 4 C 0.027 3.973 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.506 5.506 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.373 6.373 17 C 0.054 3.946 18 H 0.093 0.907 19 C 0.393 3.607 20 O -0.438 6.438 21 C -0.218 4.218 22 C -0.148 4.148 23 C -0.151 4.151 24 C 0.030 3.970 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.258 0.742 31 H 0.109 0.891 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 5.449 -15.362 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 H 0.092 0.908 4 C -0.010 4.010 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.230 5.230 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.292 6.292 17 C -0.006 4.006 18 H 0.111 0.889 19 C 0.267 3.733 20 O -0.309 6.309 21 C -0.237 4.237 22 C -0.185 4.185 23 C -0.188 4.188 24 C -0.098 4.098 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.344 4.986 -15.658 16.769 hybrid contribution 0.442 0.107 0.591 0.746 sum -2.902 5.093 -15.066 16.166 Atomic orbital electron populations 1.22531 0.99614 1.01451 1.00882 1.21956 0.90199 0.98599 0.91308 0.90842 1.19273 0.96518 0.95417 0.89835 1.21164 0.91648 1.33324 1.07225 0.92058 1.25005 0.98083 0.95749 0.95921 1.69959 1.35332 1.36704 1.12284 0.86632 0.86253 0.77292 0.78028 1.20953 1.21533 1.19896 1.62379 1.58508 1.01520 1.00625 1.22849 0.98036 0.90345 1.00082 1.22795 0.99438 0.95533 0.83513 1.87996 1.78928 1.20256 1.42008 1.22457 1.00368 0.83940 0.93801 0.88926 1.23627 0.81172 0.84405 0.84096 1.90370 1.24218 1.60610 1.55712 1.22760 1.03782 0.97259 0.99885 1.22965 0.97561 0.95936 1.02075 1.22979 1.02907 1.03070 0.89839 1.22529 0.98065 0.98878 0.90377 0.93963 0.92920 0.92288 0.96110 0.96058 0.93221 0.87340 0.94699 0.88551 0.91900 0.85214 0.88085 0.87539 0.87694 0.87839 0.94065 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 8.49 37.16 0.32 -2.86 16 2 C 0.09 1.71 2.37 -67.71 -0.16 1.55 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.03 0.65 4.14 -27.88 -0.12 0.53 16 5 C -0.50 -13.31 8.84 -34.44 -0.30 -13.61 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.51 -9.33 4.47 -226.34 -1.01 -10.35 16 14 C 0.01 0.27 4.88 -3.72 -0.02 0.25 16 15 C 0.06 1.02 7.01 37.21 0.26 1.28 16 16 O -0.37 -6.36 10.08 -54.34 -0.55 -6.91 16 17 C 0.05 0.80 3.15 -27.84 -0.09 0.71 16 18 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 19 C 0.39 5.43 6.18 -29.03 -0.18 5.25 16 20 O -0.44 -7.37 16.69 -13.11 -0.22 -7.59 16 21 C -0.22 -2.20 6.12 -91.78 -0.56 -2.76 16 22 C -0.15 -1.28 10.14 -26.70 -0.27 -1.55 16 23 C -0.15 -1.31 10.05 -26.70 -0.27 -1.58 16 24 C 0.03 0.47 4.46 -3.72 -0.02 0.46 16 25 H 0.04 0.65 6.46 -51.93 -0.34 0.32 16 26 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.55 6.02 -51.93 -0.31 0.23 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 31 H 0.11 2.20 6.00 -51.93 -0.31 1.89 16 32 H 0.03 0.62 6.52 -51.93 -0.34 0.28 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.00 7.89 -51.93 -0.41 0.59 16 40 H 0.04 0.67 6.44 -51.93 -0.33 0.33 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -31.09 328.18 -9.20 -40.29 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.57 Total: -0.07 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.50 Total: -10.99 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.28 Total: -36.04 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.77 Total: -14.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.09 -9.20 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411548282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.826 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds