Wall clock time and date at job start Mon Mar 30 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50707 * 109.47009 * 184.99986 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99791 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47123 * 89.99841 * 9 7 5 11 11 H 1.48501 * 109.47190 * 209.99451 * 9 7 5 12 12 H 1.48491 * 109.47113 * 329.99424 * 9 7 5 13 13 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 14 14 C 1.47010 * 110.99939 * 296.36564 * 13 2 1 15 15 C 1.53094 * 109.26035 * 182.39495 * 14 13 2 16 16 O 1.43021 * 109.25812 * 303.15441 * 15 14 13 17 17 C 1.43015 * 113.73808 * 58.66338 * 16 15 14 18 18 H 1.08998 * 109.50321 * 61.27214 * 17 16 15 19 19 C 1.50705 * 109.50337 * 181.39576 * 17 16 15 20 20 O 1.20754 * 120.00189 * 19.78716 * 19 17 16 21 21 C 1.50703 * 119.99736 * 199.78332 * 19 17 16 22 22 C 1.52995 * 117.49730 * 223.74929 * 21 19 17 23 23 C 1.52993 * 117.49670 * 155.08872 * 21 19 17 24 24 C 1.47012 * 111.00400 * 60.00363 * 13 2 1 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 29 29 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 30 30 H 0.97003 * 120.00323 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.50977 * 302.33110 * 14 13 2 32 32 H 1.09002 * 109.51165 * 62.45967 * 14 13 2 33 33 H 1.09004 * 109.51102 * 183.21684 * 15 14 13 34 34 H 1.09006 * 109.51014 * 63.08361 * 15 14 13 35 35 H 1.09002 * 115.54692 * 9.42117 * 21 19 17 36 36 H 1.08997 * 117.50210 * 0.02562 * 22 21 19 37 37 H 1.09002 * 117.49771 * 145.02350 * 22 21 19 38 38 H 1.09001 * 117.49828 * 214.98072 * 23 21 19 39 39 H 1.09001 * 117.50097 * 359.97438 * 23 21 19 40 40 H 1.09000 * 109.50441 * 297.54467 * 24 13 2 41 41 H 1.08999 * 109.50497 * 57.66692 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3129 6 1 4.0790 -0.0862 0.5393 7 6 4.2304 -1.1935 2.3579 8 7 3.5764 -1.8377 3.2996 9 14 6.0920 -1.0611 2.4370 10 1 6.4697 0.1611 3.1913 11 1 6.6446 -2.2566 3.1230 12 1 6.6416 -0.9825 1.0598 13 7 2.0197 -0.6925 -1.1994 14 6 1.6206 -2.1074 -1.1906 15 6 2.2006 -2.8033 -2.4248 16 8 1.7571 -2.1229 -3.6020 17 6 2.1290 -0.7426 -3.6438 18 1 3.2157 -0.6581 -3.6331 19 6 1.5869 -0.1133 -4.9013 20 8 0.6749 -0.6376 -5.4942 21 6 2.1828 1.1706 -5.4187 22 6 1.2163 2.2543 -5.9004 23 6 2.0444 1.4612 -6.9144 24 6 1.5484 -0.0259 -2.4220 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 4.0607 -2.2445 4.0351 31 1 2.0018 -2.5875 -0.2893 32 1 0.5331 -2.1790 -1.2098 33 1 1.8602 -3.8385 -2.4526 34 1 3.2894 -2.7786 -2.3787 35 1 3.0987 1.4961 -4.9253 36 1 0.1494 2.0390 -5.8427 37 1 1.4964 3.2929 -5.7243 38 1 2.8691 1.9783 -7.4050 39 1 1.5227 0.7237 -7.5243 40 1 0.4598 -0.0642 -2.4609 41 1 1.8768 1.0134 -2.4195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411548282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:10 Heat of formation + Delta-G solvation = -68.088179 kcal Electronic energy + Delta-G solvation = -21208.242867 eV Core-core repulsion = 18088.586662 eV Total energy + Delta-G solvation = -3119.656205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54480 -40.16170 -37.86733 -36.98638 -34.87550 -32.92500 -32.29467 -29.42447 -28.35095 -26.20737 -24.81114 -24.73623 -23.33934 -22.37336 -20.54898 -20.16034 -18.35494 -18.07145 -17.65115 -17.09645 -16.56984 -16.32295 -16.06251 -15.79733 -15.61650 -15.15933 -14.81559 -14.76961 -14.14190 -13.96386 -13.69887 -13.49254 -13.16937 -13.01149 -12.80072 -12.60889 -12.44135 -12.38783 -12.13478 -11.94820 -11.66173 -11.53288 -11.47836 -11.15244 -11.09046 -10.75754 -10.50684 -10.46193 -9.12207 -8.08700 -6.13984 0.68734 1.44780 1.45689 1.56488 2.26274 2.49097 2.78736 2.94289 3.26354 3.35829 3.73911 3.81759 3.97488 4.00653 4.02370 4.07673 4.18190 4.24880 4.26892 4.36724 4.46256 4.53910 4.57980 4.70955 4.73249 4.85209 4.89866 4.95188 5.01369 5.04000 5.13514 5.20447 5.20922 5.48490 5.68295 5.89760 5.95687 6.19302 6.23778 6.44078 6.44983 7.00167 7.52667 9.03226 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.004857 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.558067 B = 5763.420625 C = 5972.641479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 H 0.077 0.923 4 C 0.032 3.968 5 C -0.500 4.500 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.070 3.930 16 O -0.389 6.389 17 C 0.047 3.953 18 H 0.106 0.894 19 C 0.398 3.602 20 O -0.476 6.476 21 C -0.227 4.227 22 C -0.141 4.141 23 C -0.145 4.145 24 C 0.036 3.964 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.062 0.938 28 H -0.006 1.006 29 H 0.001 0.999 30 H 0.258 0.742 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 7.118 -17.046 18.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 H 0.095 0.905 4 C -0.005 4.005 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.582 5.582 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.243 5.243 14 C -0.108 4.108 15 C -0.007 4.007 16 O -0.308 6.308 17 C -0.012 4.012 18 H 0.124 0.876 19 C 0.274 3.726 20 O -0.350 6.350 21 C -0.246 4.246 22 C -0.177 4.177 23 C -0.182 4.182 24 C -0.092 4.092 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.012 0.988 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.170 0.830 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.231 6.673 -17.356 18.728 hybrid contribution 0.064 -0.411 1.103 1.179 sum -2.167 6.262 -16.252 17.551 Atomic orbital electron populations 1.22411 0.97637 1.01371 1.02129 1.21687 0.91736 0.97904 0.89966 0.90515 1.19125 0.95514 0.94554 0.91285 1.21477 0.92931 1.32521 1.06866 0.91951 1.25825 1.02725 0.95585 0.95714 1.70092 1.37127 1.37945 1.13042 0.85592 0.80731 0.77210 0.78350 1.20303 1.21613 1.18864 1.62298 1.59043 1.01703 1.01253 1.22730 0.97891 0.90404 0.99821 1.22784 0.99281 0.96221 0.82386 1.87992 1.79237 1.21537 1.42044 1.22697 1.01209 0.82952 0.94304 0.87629 1.23983 0.80244 0.85228 0.83113 1.90364 1.25997 1.61981 1.56690 1.22789 1.04915 0.95757 1.01150 1.23092 0.96669 0.96789 1.01187 1.23094 1.03548 1.02657 0.88866 1.22552 0.97740 0.99831 0.89110 0.91771 0.93683 0.91924 0.98804 0.98081 0.93312 0.90291 0.94844 0.86720 0.91902 0.82983 0.89372 0.84853 0.84955 0.89380 0.94631 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.91 8.49 71.98 0.61 -5.29 16 2 C 0.09 3.69 2.37 44.92 0.11 3.80 16 3 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 4 C 0.03 1.61 4.14 29.85 0.12 1.73 16 5 C -0.50 -27.01 8.84 25.60 0.23 -26.78 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.52 -18.71 4.47 -870.01 -3.89 -22.60 16 14 C 0.02 0.72 4.88 86.31 0.42 1.14 16 15 C 0.07 2.19 7.01 72.01 0.50 2.69 16 16 O -0.39 -12.91 10.08 -130.71 -1.32 -14.23 16 17 C 0.05 1.33 3.15 29.88 0.09 1.42 16 18 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 19 C 0.40 10.36 6.18 29.10 0.18 10.54 16 20 O -0.48 -15.76 16.69 16.84 0.28 -15.48 16 21 C -0.23 -3.93 6.12 -11.54 -0.07 -4.00 16 22 C -0.14 -2.00 10.14 30.62 0.31 -1.69 16 23 C -0.14 -2.10 10.05 30.62 0.31 -1.79 16 24 C 0.04 1.05 4.46 86.31 0.38 1.44 16 25 H 0.06 1.86 6.46 -2.39 -0.02 1.85 16 26 H 0.04 1.56 6.54 -2.39 -0.02 1.54 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.00 0.05 6.02 -2.39 -0.01 0.04 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.08 3.33 6.00 -2.38 -0.01 3.31 16 32 H 0.03 1.20 6.52 -2.39 -0.02 1.19 16 33 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.58 7.89 -2.39 -0.02 1.56 16 40 H 0.04 1.09 6.44 -2.39 -0.02 1.08 16 41 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -67.53 328.18 2.05 -65.48 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.00 Total: 13.33 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 3.66 Total: -16.46 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -3.60 Total: -78.47 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -1.04 Total: -29.71 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.53 2.05 -65.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411548282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.606 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds