Wall clock time and date at job start Mon Mar 30 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47275 * 2 1 4 4 C 1.53002 * 109.47069 * 240.00808 * 2 1 3 5 5 C 1.50698 * 109.47338 * 176.90295 * 4 2 1 6 6 H 1.08001 * 120.00179 * 5.02805 * 5 4 2 7 7 C 1.37880 * 120.00301 * 185.03377 * 5 4 2 8 8 N 1.31514 * 120.00115 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99607 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47157 * 89.99985 * 9 7 5 11 11 H 1.48507 * 109.46647 * 210.00115 * 9 7 5 12 12 H 1.48495 * 109.47310 * 329.99698 * 9 7 5 13 13 N 1.46895 * 109.47286 * 120.00588 * 2 1 3 14 14 C 1.47014 * 111.00211 * 59.40416 * 13 2 1 15 15 C 1.53095 * 109.25984 * 177.60497 * 14 13 2 16 16 O 1.43024 * 109.25304 * 56.85133 * 15 14 13 17 17 C 1.43009 * 113.74009 * 301.32906 * 16 15 14 18 18 H 1.09007 * 109.50523 * 298.68932 * 17 16 15 19 19 C 1.50697 * 109.50682 * 178.60889 * 17 16 15 20 20 O 1.20762 * 120.00008 * 344.99846 * 19 17 16 21 21 C 1.50703 * 120.00323 * 164.99919 * 19 17 16 22 22 C 1.52995 * 117.50139 * 223.74453 * 21 19 17 23 23 C 1.52999 * 117.50042 * 155.08350 * 21 19 17 24 24 C 1.47016 * 110.99909 * 295.77135 * 13 2 1 25 25 H 1.08997 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47654 * 299.99754 * 1 2 3 27 27 H 1.09009 * 109.47607 * 59.99423 * 1 2 3 28 28 H 1.09004 * 109.47076 * 296.89886 * 4 2 1 29 29 H 1.09000 * 109.47579 * 56.89860 * 4 2 1 30 30 H 0.97003 * 119.99861 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.50586 * 297.54976 * 14 13 2 32 32 H 1.09000 * 109.50390 * 57.63142 * 14 13 2 33 33 H 1.08997 * 109.50974 * 176.78294 * 15 14 13 34 34 H 1.08991 * 109.51145 * 296.87832 * 15 14 13 35 35 H 1.08999 * 115.54617 * 9.41561 * 21 19 17 36 36 H 1.08999 * 117.49889 * 359.97438 * 22 21 19 37 37 H 1.08997 * 117.49999 * 145.01457 * 22 21 19 38 38 H 1.09004 * 117.49736 * 214.98465 * 23 21 19 39 39 H 1.09004 * 117.50088 * 359.97438 * 23 21 19 40 40 H 1.09003 * 109.50635 * 302.32844 * 24 13 2 41 41 H 1.08994 * 109.50537 * 62.45819 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5450 -0.6550 -1.2884 6 1 4.0881 -0.2213 -0.4618 7 6 4.2287 -1.1481 -2.3795 8 7 5.5421 -1.0899 -2.4137 9 14 3.2893 -1.8988 -3.8090 10 1 2.9688 -0.8410 -4.8007 11 1 4.1225 -2.9456 -4.4535 12 1 2.0301 -2.5067 -3.3092 13 7 2.0196 -0.6926 1.1993 14 6 1.5367 -2.0805 1.2403 15 6 2.1175 -2.7811 2.4714 16 8 1.7575 -2.0476 3.6453 17 6 2.2125 -0.6919 3.6391 18 1 3.3013 -0.6736 3.5901 19 6 1.7539 -0.0015 4.8977 20 8 0.8923 -0.5010 5.5808 21 6 2.3704 1.3123 5.3040 22 6 2.7384 1.4942 6.7778 23 6 1.5371 2.2395 6.1910 24 6 1.6326 0.0299 2.4198 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3635 0.5139 -0.8900 28 1 1.7227 -1.7636 -1.2221 29 1 1.6319 -0.2403 -2.1385 30 1 6.0230 -1.4365 -3.1815 31 1 0.4483 -2.0856 1.2982 32 1 1.8556 -2.6036 0.3388 33 1 1.7171 -3.7928 2.5373 34 1 3.2033 -2.8242 2.3873 35 1 3.0205 1.7759 4.5620 36 1 2.5342 0.6638 7.4538 37 1 3.6304 2.0777 7.0055 38 1 1.6392 3.3131 6.0327 39 1 0.5427 1.8995 6.4804 40 1 2.0222 1.0471 2.3796 41 1 0.5458 0.0585 2.4966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411548284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:14 Heat of formation + Delta-G solvation = -45.565325 kcal Electronic energy + Delta-G solvation = -21204.454888 eV Core-core repulsion = 18085.775348 eV Total energy + Delta-G solvation = -3118.679540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38392 -38.96178 -36.58849 -36.04294 -32.83763 -31.65152 -30.93013 -28.11170 -27.13733 -24.85024 -23.66567 -22.74981 -22.68034 -20.93829 -19.39466 -18.83042 -17.01646 -16.63724 -16.49921 -15.84216 -15.16906 -14.94727 -14.79463 -14.49884 -14.27279 -13.99565 -13.51728 -13.15467 -12.98793 -12.57794 -12.39493 -12.23837 -11.80976 -11.77828 -11.56449 -11.44876 -10.96169 -10.88285 -10.79149 -10.72483 -10.41876 -10.29419 -9.78607 -9.65323 -9.55914 -9.35647 -9.07805 -8.48951 -7.72125 -5.97520 -3.92626 1.73935 3.30034 3.30800 3.39305 3.40887 3.61463 4.14086 4.48058 4.48686 4.52789 4.66876 4.85489 5.02787 5.13375 5.21228 5.33098 5.35482 5.35867 5.50371 5.55248 5.59917 5.64036 5.74264 5.75354 5.78424 5.84013 5.84676 5.93367 6.18613 6.20229 6.38905 6.46411 6.65791 6.99787 7.16846 7.24995 7.50717 7.58731 7.64322 7.85196 8.65099 9.15973 9.65460 11.16156 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.004707 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.167357 B = 5947.783454 C = 6070.656818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.096 3.904 3 H 0.079 0.921 4 C -0.007 4.007 5 C -0.496 4.496 6 H 0.081 0.919 7 C 0.063 3.937 8 N -0.905 5.905 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.504 5.504 14 C 0.015 3.985 15 C 0.063 3.937 16 O -0.372 6.372 17 C 0.053 3.947 18 H 0.097 0.903 19 C 0.394 3.606 20 O -0.439 6.439 21 C -0.218 4.218 22 C -0.148 4.148 23 C -0.151 4.151 24 C 0.032 3.968 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 3.998 13.452 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.011 4.011 3 H 0.097 0.903 4 C -0.045 4.045 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.228 5.228 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.291 6.291 17 C -0.006 4.006 18 H 0.115 0.885 19 C 0.267 3.733 20 O -0.310 6.310 21 C -0.237 4.237 22 C -0.185 4.185 23 C -0.188 4.188 24 C -0.097 4.097 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.402 3.578 13.832 16.090 hybrid contribution -0.998 -0.306 -1.327 1.688 sum -8.399 3.272 12.505 15.415 Atomic orbital electron populations 1.22569 0.99513 1.01556 1.01182 1.21726 0.90046 0.98667 0.90706 0.90272 1.19708 0.98140 0.95178 0.91440 1.21058 0.89032 1.38794 1.04536 0.90050 1.25016 0.94661 0.95910 0.98066 1.69905 1.06411 1.47628 1.30596 0.86918 0.80267 0.79428 0.83409 1.20523 1.21561 1.19394 1.62334 1.58654 1.01201 1.00567 1.22828 0.97381 0.91064 1.00012 1.22772 1.00430 0.94568 0.83538 1.87999 1.78703 1.21399 1.40988 1.22464 1.00299 0.84148 0.93719 0.88542 1.23625 0.80017 0.85049 0.84561 1.90371 1.25431 1.63857 1.51357 1.22766 1.06612 0.97750 0.96588 1.22965 0.99810 1.03292 0.92440 1.22980 0.96781 0.97736 1.01327 1.22530 0.98398 0.98552 0.90225 0.92809 0.93608 0.92265 0.96620 0.96534 0.92982 0.94594 0.88042 0.88572 0.91625 0.85092 0.88090 0.87534 0.87648 0.87881 0.89454 0.94153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 8.49 37.15 0.32 -2.69 16 2 C 0.10 1.81 2.33 -67.72 -0.16 1.65 16 3 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 4 C -0.01 -0.16 3.28 -27.88 -0.09 -0.26 16 5 C -0.50 -13.46 9.36 -34.44 -0.32 -13.79 16 6 H 0.08 2.42 7.94 -52.49 -0.42 2.00 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.87 21.27 27.37 -169.99 -4.65 16.61 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.30 6.69 56.52 0.38 -5.92 16 13 N -0.50 -9.10 4.34 -226.34 -0.98 -10.09 16 14 C 0.02 0.26 4.87 -3.71 -0.02 0.24 16 15 C 0.06 0.99 7.01 37.21 0.26 1.25 16 16 O -0.37 -6.27 10.05 -54.70 -0.55 -6.82 16 17 C 0.05 0.79 3.15 -27.84 -0.09 0.70 16 18 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 19 C 0.39 5.44 6.21 -29.03 -0.18 5.26 16 20 O -0.44 -7.35 16.64 -13.47 -0.22 -7.57 16 21 C -0.22 -2.24 6.11 -91.77 -0.56 -2.80 16 22 C -0.15 -1.29 10.14 -26.70 -0.27 -1.56 16 23 C -0.15 -1.34 10.05 -26.70 -0.27 -1.61 16 24 C 0.03 0.49 4.55 -3.71 -0.02 0.47 16 25 H 0.05 0.85 6.45 -51.93 -0.33 0.52 16 26 H 0.04 0.66 6.56 -51.93 -0.34 0.32 16 27 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.02 0.36 5.61 -51.93 -0.29 0.07 16 29 H 0.02 0.37 7.29 -51.93 -0.38 0.00 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.04 0.60 6.43 -51.93 -0.33 0.26 16 32 H 0.10 1.90 6.13 -51.93 -0.32 1.58 16 33 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.01 7.89 -51.93 -0.41 0.60 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.63 6.54 -51.93 -0.34 0.29 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -31.85 324.85 -8.79 -40.63 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.55 Total: 0.44 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.50 Total: -11.42 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.21 Total: -36.76 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.77 Total: -14.39 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.65 Total: 16.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.85 -8.79 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411548284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.934 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds