Wall clock time and date at job start Mon Mar 30 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47275 * 2 1 4 4 C 1.53002 * 109.47069 * 240.00808 * 2 1 3 5 5 C 1.50698 * 109.47338 * 176.90295 * 4 2 1 6 6 H 1.08001 * 120.00179 * 5.02805 * 5 4 2 7 7 C 1.37880 * 120.00301 * 185.03377 * 5 4 2 8 8 N 1.31514 * 120.00115 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99607 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47157 * 89.99985 * 9 7 5 11 11 H 1.48507 * 109.46647 * 210.00115 * 9 7 5 12 12 H 1.48495 * 109.47310 * 329.99698 * 9 7 5 13 13 N 1.46895 * 109.47286 * 120.00588 * 2 1 3 14 14 C 1.47014 * 111.00211 * 59.40416 * 13 2 1 15 15 C 1.53095 * 109.25984 * 177.60497 * 14 13 2 16 16 O 1.43024 * 109.25304 * 56.85133 * 15 14 13 17 17 C 1.43009 * 113.74009 * 301.32906 * 16 15 14 18 18 H 1.09007 * 109.50523 * 298.68932 * 17 16 15 19 19 C 1.50697 * 109.50682 * 178.60889 * 17 16 15 20 20 O 1.20762 * 120.00008 * 344.99846 * 19 17 16 21 21 C 1.50703 * 120.00323 * 164.99919 * 19 17 16 22 22 C 1.52995 * 117.50139 * 223.74453 * 21 19 17 23 23 C 1.52999 * 117.50042 * 155.08350 * 21 19 17 24 24 C 1.47016 * 110.99909 * 295.77135 * 13 2 1 25 25 H 1.08997 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47654 * 299.99754 * 1 2 3 27 27 H 1.09009 * 109.47607 * 59.99423 * 1 2 3 28 28 H 1.09004 * 109.47076 * 296.89886 * 4 2 1 29 29 H 1.09000 * 109.47579 * 56.89860 * 4 2 1 30 30 H 0.97003 * 119.99861 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.50586 * 297.54976 * 14 13 2 32 32 H 1.09000 * 109.50390 * 57.63142 * 14 13 2 33 33 H 1.08997 * 109.50974 * 176.78294 * 15 14 13 34 34 H 1.08991 * 109.51145 * 296.87832 * 15 14 13 35 35 H 1.08999 * 115.54617 * 9.41561 * 21 19 17 36 36 H 1.08999 * 117.49889 * 359.97438 * 22 21 19 37 37 H 1.08997 * 117.49999 * 145.01457 * 22 21 19 38 38 H 1.09004 * 117.49736 * 214.98465 * 23 21 19 39 39 H 1.09004 * 117.50088 * 359.97438 * 23 21 19 40 40 H 1.09003 * 109.50635 * 302.32844 * 24 13 2 41 41 H 1.08994 * 109.50537 * 62.45819 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5450 -0.6550 -1.2884 6 1 4.0881 -0.2213 -0.4618 7 6 4.2287 -1.1481 -2.3795 8 7 5.5421 -1.0899 -2.4137 9 14 3.2893 -1.8988 -3.8090 10 1 2.9688 -0.8410 -4.8007 11 1 4.1225 -2.9456 -4.4535 12 1 2.0301 -2.5067 -3.3092 13 7 2.0196 -0.6926 1.1993 14 6 1.5367 -2.0805 1.2403 15 6 2.1175 -2.7811 2.4714 16 8 1.7575 -2.0476 3.6453 17 6 2.2125 -0.6919 3.6391 18 1 3.3013 -0.6736 3.5901 19 6 1.7539 -0.0015 4.8977 20 8 0.8923 -0.5010 5.5808 21 6 2.3704 1.3123 5.3040 22 6 2.7384 1.4942 6.7778 23 6 1.5371 2.2395 6.1910 24 6 1.6326 0.0299 2.4198 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3635 0.5139 -0.8900 28 1 1.7227 -1.7636 -1.2221 29 1 1.6319 -0.2403 -2.1385 30 1 6.0230 -1.4365 -3.1815 31 1 0.4483 -2.0856 1.2982 32 1 1.8556 -2.6036 0.3388 33 1 1.7171 -3.7928 2.5373 34 1 3.2033 -2.8242 2.3873 35 1 3.0205 1.7759 4.5620 36 1 2.5342 0.6638 7.4538 37 1 3.6304 2.0777 7.0055 38 1 1.6392 3.3131 6.0327 39 1 0.5427 1.8995 6.4804 40 1 2.0222 1.0471 2.3796 41 1 0.5458 0.0585 2.4966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411548284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:14 Heat of formation + Delta-G solvation = -65.800029 kcal Electronic energy + Delta-G solvation = -21205.332331 eV Core-core repulsion = 18085.775348 eV Total energy + Delta-G solvation = -3119.556983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55331 -40.17696 -37.89562 -36.99521 -34.81635 -33.05709 -32.41155 -29.82709 -28.39749 -26.12667 -24.81950 -24.47771 -23.35805 -22.32846 -20.51480 -20.19010 -18.74847 -18.10670 -17.68884 -17.11766 -16.54082 -16.20065 -16.07185 -15.84836 -15.58194 -15.27730 -14.87680 -14.62323 -14.38050 -14.02185 -13.96706 -13.48123 -13.32922 -13.02149 -12.84028 -12.61382 -12.44859 -12.19896 -12.12245 -11.70042 -11.62053 -11.56614 -11.49674 -11.35525 -11.18029 -10.77832 -10.65577 -10.53431 -9.09216 -8.15705 -6.14689 0.68111 1.38322 1.40600 1.50346 2.23762 2.43086 2.78162 2.91191 3.20237 3.34172 3.73911 3.79046 3.95626 3.98798 3.99749 4.06247 4.15139 4.23821 4.24562 4.34779 4.44450 4.53189 4.57322 4.69177 4.71824 4.79767 4.89816 4.93783 4.97611 5.02293 5.05500 5.17197 5.19374 5.22029 5.54810 5.75122 5.93802 6.19358 6.21830 6.43253 6.51627 6.95132 7.46648 9.01190 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.004707 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.167357 B = 5947.783454 C = 6070.656818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.099 3.901 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.490 4.490 6 H 0.043 0.957 7 C 0.002 3.998 8 N -0.956 5.956 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.250 1.250 13 N -0.527 5.527 14 C 0.018 3.982 15 C 0.067 3.933 16 O -0.387 6.387 17 C 0.047 3.953 18 H 0.099 0.901 19 C 0.399 3.601 20 O -0.474 6.474 21 C -0.230 4.230 22 C -0.140 4.140 23 C -0.143 4.143 24 C 0.039 3.961 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.018 0.982 29 H 0.022 0.978 30 H 0.260 0.740 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 4.747 13.701 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.009 4.009 3 H 0.091 0.909 4 C -0.043 4.043 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.194 4.194 8 N -0.598 5.598 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.174 1.174 13 N -0.251 5.251 14 C -0.110 4.110 15 C -0.010 4.010 16 O -0.306 6.306 17 C -0.012 4.012 18 H 0.117 0.883 19 C 0.276 3.724 20 O -0.349 6.349 21 C -0.249 4.249 22 C -0.177 4.177 23 C -0.180 4.180 24 C -0.090 4.090 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.073 0.927 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.937 4.338 14.090 17.240 hybrid contribution -0.464 -0.505 -1.321 1.488 sum -9.401 3.833 12.769 16.313 Atomic orbital electron populations 1.22436 0.96788 1.02008 1.02538 1.21552 0.92132 0.97707 0.89523 0.90862 1.19653 0.94938 0.95918 0.93753 1.21282 0.91461 1.37151 1.02936 0.93878 1.25876 0.95415 0.96824 1.01255 1.70068 1.08376 1.49638 1.31722 0.85843 0.79382 0.78625 0.79818 1.19627 1.21823 1.17404 1.62251 1.59608 1.01866 1.01381 1.22771 0.97834 0.90645 0.99744 1.22804 0.99860 0.95499 0.82820 1.87992 1.78916 1.22415 1.41310 1.22652 1.00482 0.83532 0.94519 0.88338 1.23929 0.79160 0.85893 0.83455 1.90361 1.27152 1.65103 1.52238 1.22780 1.07801 0.96274 0.98048 1.23100 1.00863 1.03076 0.90649 1.23094 0.96124 0.98809 0.99958 1.22518 0.98449 0.99006 0.89001 0.92766 0.92039 0.91155 0.96350 0.95974 0.93090 0.93760 0.89926 0.86294 0.92665 0.83402 0.89190 0.84939 0.85046 0.89159 0.87889 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.22 8.49 71.98 0.61 -4.61 16 2 C 0.10 3.59 2.33 44.91 0.10 3.70 16 3 H 0.07 2.73 8.13 -2.39 -0.02 2.71 16 4 C -0.01 -0.23 3.28 29.85 0.10 -0.13 16 5 C -0.49 -26.91 9.36 25.60 0.24 -26.67 16 6 H 0.04 2.64 7.94 -2.91 -0.02 2.62 16 7 C 0.00 0.09 5.47 84.66 0.46 0.55 16 8 N -0.96 -59.32 13.96 21.45 0.30 -59.02 16 9 Si 0.94 43.61 27.37 68.60 1.88 45.49 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.25 -10.77 6.69 99.48 0.67 -10.10 16 13 N -0.53 -18.70 4.34 -870.01 -3.78 -22.48 16 14 C 0.02 0.61 4.87 86.31 0.42 1.03 16 15 C 0.07 2.05 7.01 72.01 0.50 2.56 16 16 O -0.39 -12.87 10.05 -130.36 -1.31 -14.18 16 17 C 0.05 1.37 3.15 29.88 0.09 1.47 16 18 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 19 C 0.40 10.70 6.21 29.10 0.18 10.88 16 20 O -0.47 -15.77 16.64 17.16 0.29 -15.48 16 21 C -0.23 -4.29 6.11 -11.54 -0.07 -4.36 16 22 C -0.14 -2.13 10.14 30.62 0.31 -1.82 16 23 C -0.14 -2.19 10.05 30.62 0.31 -1.88 16 24 C 0.04 1.13 4.55 86.31 0.39 1.52 16 25 H 0.05 1.58 6.45 -2.39 -0.02 1.56 16 26 H 0.06 1.61 6.56 -2.39 -0.02 1.59 16 27 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.02 0.81 5.61 -2.38 -0.01 0.80 16 29 H 0.02 0.95 7.29 -2.39 -0.02 0.94 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.04 1.40 6.43 -2.39 -0.02 1.39 16 32 H 0.08 3.06 6.13 -2.39 -0.01 3.05 16 33 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.09 1.65 7.89 -2.38 -0.02 1.63 16 40 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.04 1.21 6.54 -2.39 -0.02 1.19 16 Total: -1.00 -69.42 324.85 2.00 -67.42 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.02 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 3.66 Total: -17.77 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -3.48 Total: -81.50 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.02 Total: -29.66 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -69.42 2.00 -67.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411548284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.622 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds