Wall clock time and date at job start Mon Mar 30 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47021 * 2 1 4 4 C 1.53001 * 109.46787 * 240.00569 * 2 1 3 5 5 C 1.50700 * 109.47104 * 64.46739 * 4 2 1 6 6 H 1.07999 * 120.00193 * 5.06689 * 5 4 2 7 7 C 1.37874 * 120.00261 * 185.07265 * 5 4 2 8 8 N 1.31516 * 119.99899 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00411 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47194 * 59.99450 * 9 7 5 11 11 H 1.48499 * 109.47355 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46867 * 299.99279 * 9 7 5 13 13 N 1.46896 * 109.47354 * 120.00312 * 2 1 3 14 14 C 1.47008 * 110.99833 * 180.73391 * 13 2 1 15 15 C 1.53099 * 109.25951 * 182.39587 * 14 13 2 16 16 O 1.43023 * 109.25589 * 303.15572 * 15 14 13 17 17 C 1.43005 * 113.73774 * 58.66770 * 16 15 14 18 18 H 1.08997 * 109.50981 * 61.31021 * 17 16 15 19 19 C 1.50703 * 109.50395 * 181.39339 * 17 16 15 20 20 O 1.20763 * 120.00056 * 20.00130 * 19 17 16 21 21 C 1.50707 * 119.99939 * 199.99680 * 19 17 16 22 22 C 1.53001 * 117.50015 * 223.74869 * 21 19 17 23 23 C 1.53002 * 117.49542 * 155.09002 * 21 19 17 24 24 C 1.47007 * 111.00446 * 304.37526 * 13 2 1 25 25 H 1.09001 * 109.47820 * 59.99194 * 1 2 3 26 26 H 1.09005 * 109.46871 * 299.99081 * 1 2 3 27 27 H 1.09004 * 109.47021 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46889 * 184.46466 * 4 2 1 29 29 H 1.08999 * 109.46923 * 304.46696 * 4 2 1 30 30 H 0.97003 * 120.00342 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.50981 * 302.33034 * 14 13 2 32 32 H 1.09005 * 109.50776 * 62.41792 * 14 13 2 33 33 H 1.09006 * 109.50957 * 63.08519 * 15 14 13 34 34 H 1.09003 * 109.51219 * 183.22148 * 15 14 13 35 35 H 1.09000 * 115.55134 * 9.42537 * 21 19 17 36 36 H 1.08999 * 117.49947 * 0.02562 * 22 21 19 37 37 H 1.08997 * 117.49509 * 145.02451 * 22 21 19 38 38 H 1.09003 * 117.49301 * 214.98232 * 23 21 19 39 39 H 1.09001 * 117.50068 * 359.97324 * 23 21 19 40 40 H 1.09005 * 109.50483 * 297.54218 * 24 13 2 41 41 H 1.09003 * 109.50923 * 57.66638 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6299 0.0504 -2.4772 6 1 1.1344 1.0045 -2.3750 7 6 1.8874 -0.4617 -3.7311 8 7 2.4912 -1.6234 -3.8557 9 14 1.3798 0.4950 -5.2532 10 1 2.0604 1.8148 -5.2581 11 1 1.7674 -0.2658 -6.4682 12 1 -0.0914 0.6966 -5.2433 13 7 2.0197 -0.6925 1.1993 14 6 3.4892 -0.6969 1.2420 15 6 3.9563 -1.4781 2.4730 16 8 3.3821 -0.8964 3.6467 17 6 1.9522 -0.8765 3.6388 18 1 1.5742 -1.8975 3.5884 19 6 1.4513 -0.2161 4.8975 20 8 2.1827 0.5040 5.5337 21 6 0.0376 -0.4544 5.3621 22 6 -0.7600 0.7573 5.8484 23 6 -0.2545 -0.2804 6.8538 24 6 1.4648 -0.0892 2.4197 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1270 -0.7910 -1.2103 29 1 1.6127 -1.7231 -1.2903 30 1 2.6727 -1.9836 -4.7379 31 1 3.8781 -1.1710 0.3409 32 1 3.8547 0.3284 1.3006 33 1 3.6365 -2.5168 2.3880 34 1 5.0434 -1.4356 2.5403 35 1 -0.5068 -1.2348 4.8303 36 1 -0.2624 1.7269 5.8320 37 1 -1.8291 0.7739 5.6370 38 1 -0.9914 -0.9461 7.3033 39 1 0.5758 0.0059 7.4993 40 1 1.7979 0.9458 2.4978 41 1 0.3760 -0.1196 2.3782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411548285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:16 Heat of formation + Delta-G solvation = -52.371596 kcal Electronic energy + Delta-G solvation = -20907.803546 eV Core-core repulsion = 17788.828863 eV Total energy + Delta-G solvation = -3118.974682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42202 -38.90641 -36.50756 -36.06238 -33.10612 -31.66347 -31.05708 -27.72695 -26.64038 -25.31103 -23.51732 -22.79810 -22.69569 -20.75573 -19.62476 -19.06653 -17.13894 -16.70273 -16.37937 -15.84807 -15.16511 -14.86972 -14.79691 -14.60065 -14.37956 -13.68479 -13.64077 -13.29057 -13.04997 -12.80968 -12.13132 -11.84987 -11.77649 -11.59576 -11.32912 -11.27663 -10.94949 -10.89665 -10.85953 -10.77965 -10.54950 -10.32506 -9.95123 -9.63932 -9.58582 -9.17601 -9.15553 -8.37024 -7.89155 -6.03643 -4.05637 1.67268 3.24147 3.30531 3.35504 3.37353 3.55039 4.08936 4.38589 4.46758 4.47996 4.61412 4.78258 4.96249 5.06385 5.12466 5.28742 5.31244 5.31911 5.44603 5.51095 5.57526 5.67432 5.69206 5.79937 5.83941 5.90499 6.03313 6.15903 6.24123 6.25073 6.59491 6.81447 7.03265 7.08888 7.38082 7.42702 7.45625 7.69832 7.80130 8.00923 8.38232 9.00047 9.57758 11.07622 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.004155 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.650267 B = 6737.390384 C = 7367.551141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.085 3.915 3 H 0.029 0.971 4 C 0.033 3.967 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.529 5.529 14 C 0.014 3.986 15 C 0.064 3.936 16 O -0.371 6.371 17 C 0.053 3.947 18 H 0.093 0.907 19 C 0.393 3.607 20 O -0.436 6.436 21 C -0.218 4.218 22 C -0.148 4.148 23 C -0.151 4.151 24 C 0.031 3.969 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 0.434 17.087 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.004 4.004 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.255 5.255 14 C -0.114 4.114 15 C -0.012 4.012 16 O -0.290 6.290 17 C -0.006 4.006 18 H 0.110 0.890 19 C 0.266 3.734 20 O -0.307 6.307 21 C -0.237 4.237 22 C -0.185 4.185 23 C -0.188 4.188 24 C -0.098 4.098 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.433 0.286 17.415 17.973 hybrid contribution -0.122 1.076 -1.334 1.718 sum -4.555 1.361 16.082 16.770 Atomic orbital electron populations 1.21796 0.95109 1.01752 1.00312 1.21903 0.95128 0.95354 0.89777 0.95335 1.19161 0.96002 0.96277 0.88953 1.21128 1.38697 1.05164 0.90816 0.92750 1.24975 0.95237 0.94960 0.99026 1.69952 1.41808 1.17930 1.23520 0.86677 0.79029 0.79980 0.82433 1.20319 1.21281 1.20218 1.62354 1.06880 1.54611 1.01631 1.22841 0.88986 0.99806 0.99763 1.22788 0.98064 0.96663 0.83698 1.88014 1.17409 1.82750 1.40855 1.22487 0.83573 1.00598 0.93946 0.88960 1.23613 0.87595 0.77947 0.84221 1.90380 1.57424 1.29400 1.53544 1.22751 0.96335 1.04498 1.00124 1.22977 0.99975 0.93561 1.01994 1.22987 1.03634 1.02215 0.89940 1.22554 1.01281 0.96111 0.89841 0.91218 0.94923 0.92472 0.96713 0.95239 0.92914 0.87962 0.94400 0.92077 0.88319 0.85232 0.88036 0.87484 0.87666 0.87821 0.94325 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.63 37.16 0.32 -2.09 16 2 C 0.08 1.73 2.09 -67.71 -0.14 1.59 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.03 0.83 4.37 -27.88 -0.12 0.71 16 5 C -0.52 -14.14 8.30 -34.44 -0.29 -14.42 16 6 H 0.05 1.44 7.22 -52.49 -0.38 1.06 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.53 -9.41 4.59 -226.34 -1.04 -10.45 16 14 C 0.01 0.24 5.36 -3.71 -0.02 0.22 16 15 C 0.06 0.94 7.01 37.21 0.26 1.20 16 16 O -0.37 -6.01 10.08 -54.32 -0.55 -6.55 16 17 C 0.05 0.75 3.15 -27.83 -0.09 0.66 16 18 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 19 C 0.39 5.21 6.18 -29.03 -0.18 5.03 16 20 O -0.44 -7.17 16.69 -13.10 -0.22 -7.39 16 21 C -0.22 -2.08 6.12 -91.77 -0.56 -2.64 16 22 C -0.15 -1.23 10.14 -26.69 -0.27 -1.50 16 23 C -0.15 -1.24 10.05 -26.69 -0.27 -1.51 16 24 C 0.03 0.47 4.50 -3.72 -0.02 0.45 16 25 H 0.07 1.35 7.02 -51.93 -0.36 0.99 16 26 H 0.03 0.50 6.29 -51.93 -0.33 0.17 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.01 0.39 6.14 -51.93 -0.32 0.07 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 31 H 0.10 1.88 6.11 -51.93 -0.32 1.56 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.26 6.10 -51.93 -0.32 0.95 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -31.31 329.66 -9.23 -40.54 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.64 Total: -1.14 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.47 Total: -10.74 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.30 Total: -35.89 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.77 Total: -13.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.31 -9.23 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411548285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.828 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds