Wall clock time and date at job start Mon Mar 30 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99691 * 2 1 4 4 C 1.52997 * 109.47458 * 123.65890 * 3 2 1 5 5 C 1.50699 * 109.53938 * 303.89732 * 4 3 2 6 6 O 1.21280 * 120.00138 * 113.27110 * 5 4 3 7 7 N 1.34778 * 119.99994 * 293.26590 * 5 4 3 8 8 C 1.46499 * 120.00037 * 174.94922 * 7 5 4 9 9 H 1.08995 * 109.46960 * 324.99610 * 8 7 5 10 10 C 1.53000 * 109.47310 * 85.00015 * 8 7 5 11 11 C 1.50709 * 109.47052 * 204.99820 * 8 7 5 12 12 H 1.08002 * 119.99614 * 0.02562 * 11 8 7 13 13 C 1.37869 * 119.99791 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00507 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99626 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47298 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46959 * 120.00397 * 15 13 11 18 18 H 1.48500 * 109.47062 * 239.99884 * 15 13 11 19 19 C 1.53174 * 109.54631 * 183.71834 * 4 3 2 20 20 C 1.53100 * 109.15952 * 183.23867 * 19 4 3 21 21 O 1.42906 * 109.48270 * 57.47484 * 20 19 4 22 22 C 1.42898 * 114.09985 * 298.88584 * 21 20 19 23 23 C 1.53096 * 109.41338 * 61.16169 * 22 21 20 24 24 H 1.08001 * 120.00528 * 359.72446 * 1 2 3 25 25 H 1.08007 * 119.99436 * 179.72968 * 1 2 3 26 26 H 1.08001 * 120.00528 * 180.27554 * 2 1 3 27 27 H 1.09004 * 109.46869 * 243.66212 * 3 2 1 28 28 H 1.08997 * 109.46766 * 3.65314 * 3 2 1 29 29 H 0.97003 * 120.00062 * 354.94556 * 7 5 4 30 30 H 1.09001 * 109.47012 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.46773 * 299.99654 * 10 8 7 32 32 H 1.08995 * 109.47440 * 59.99888 * 10 8 7 33 33 H 0.96998 * 120.00638 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.52191 * 303.05995 * 19 4 3 35 35 H 1.09002 * 109.51922 * 63.24297 * 19 4 3 36 36 H 1.08997 * 109.40754 * 297.49437 * 20 19 4 37 37 H 1.08997 * 109.49186 * 177.50651 * 20 19 4 38 38 H 1.08998 * 109.48341 * 301.17705 * 22 21 20 39 39 H 1.08998 * 109.49138 * 181.14718 * 22 21 20 40 40 H 1.09000 * 109.52259 * 182.48622 * 23 22 21 41 41 H 1.08998 * 109.57630 * 62.32949 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0108 1.3473 1.2006 5 6 2.2266 1.1318 2.4693 6 8 2.3989 0.1264 3.1254 7 7 1.3338 2.0564 2.8749 8 6 0.4924 1.7980 4.0460 9 1 0.2391 0.7386 4.0847 10 6 1.2521 2.1874 5.3158 11 6 -0.7711 2.6133 3.9466 12 1 -0.9315 3.2590 3.0958 13 6 -1.7227 2.5341 4.9411 14 7 -1.5276 1.7474 5.9768 15 14 -3.2886 3.5453 4.8181 16 1 -3.2655 4.3432 3.5659 17 1 -4.4640 2.6378 4.8048 18 1 -3.3813 4.4581 5.9857 19 6 3.7091 2.7095 1.2549 20 6 4.7137 2.7135 2.4103 21 8 5.6489 1.6477 2.2324 22 6 5.0566 0.3472 2.2225 23 6 4.0675 0.2474 1.0583 24 1 -0.5401 0.9353 0.0045 25 1 -0.5399 -0.9354 -0.0044 26 1 1.8501 -0.9353 -0.0045 27 1 2.6400 1.3919 -0.9210 28 1 1.3569 2.1325 0.0655 29 1 1.2484 2.8930 2.3915 30 1 0.6262 1.9947 6.1871 31 1 2.1659 1.5977 5.3877 32 1 1.5054 3.2468 5.2771 33 1 -2.1973 1.6913 6.6763 34 1 4.2344 2.8872 0.3165 35 1 2.9677 3.4928 1.4124 36 1 4.1827 2.5777 3.3524 37 1 5.2455 3.6648 2.4266 38 1 4.5301 0.1804 3.1622 39 1 5.8353 -0.4061 2.1035 40 1 3.5821 -0.7284 1.0754 41 1 4.5994 0.3732 0.1153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424624985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:13 Heat of formation + Delta-G solvation = -80.202423 kcal Electronic energy + Delta-G solvation = -21991.878640 eV Core-core repulsion = 18871.697122 eV Total energy + Delta-G solvation = -3120.181518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54471 -37.72474 -35.66883 -34.78540 -32.76775 -32.28407 -30.84876 -28.84628 -27.42722 -25.26777 -23.67609 -23.52118 -22.12641 -20.20383 -19.59330 -18.80487 -16.87315 -16.10461 -15.83311 -15.64729 -15.33600 -14.80354 -14.66258 -14.21821 -14.06940 -13.66744 -13.30785 -12.84997 -12.54999 -12.35704 -12.11261 -11.94818 -11.63747 -11.44841 -11.21190 -11.12486 -11.06486 -10.93922 -10.71517 -10.31067 -10.29363 -10.26190 -10.21629 -9.40029 -9.13655 -9.03333 -8.73772 -8.53512 -7.87975 -6.13565 -4.22736 2.54776 3.21622 3.29585 3.31731 3.41013 4.01555 4.10648 4.35960 4.61283 4.88411 4.94408 5.12792 5.18948 5.26157 5.35085 5.42637 5.47501 5.63179 5.72503 5.77588 5.82230 5.87722 5.95898 6.04294 6.13511 6.18590 6.27320 6.34809 6.82320 6.87259 6.97133 7.00971 7.15606 7.36960 7.47957 7.56271 7.68786 7.91736 8.14853 8.68422 8.78010 9.14755 9.45326 10.92343 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.006310 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.542313 B = 4436.398877 C = 5005.133987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.162 4.162 3 C -0.075 4.075 4 C -0.079 4.079 5 C 0.517 3.483 6 O -0.551 6.551 7 N -0.706 5.706 8 C 0.268 3.732 9 H 0.046 0.954 10 C -0.146 4.146 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.883 5.883 15 Si 0.899 3.101 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.144 4.144 20 C 0.058 3.942 21 O -0.387 6.387 22 C 0.051 3.949 23 C -0.125 4.125 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.385 0.615 30 H 0.089 0.911 31 H 0.014 0.986 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 1.009 -11.124 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C -0.112 4.112 4 C -0.082 4.082 5 C 0.302 3.698 6 O -0.431 6.431 7 N -0.353 5.353 8 C 0.166 3.834 9 H 0.063 0.937 10 C -0.205 4.205 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.727 3.273 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.182 4.182 20 C -0.019 4.019 21 O -0.306 6.306 22 C -0.025 4.025 23 C -0.163 4.163 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.218 0.782 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.949 0.258 -10.473 13.778 hybrid contribution -1.367 0.874 -0.179 1.632 sum 7.582 1.132 -10.652 13.124 Atomic orbital electron populations 1.23832 0.95887 1.01931 0.99610 1.22779 0.95997 0.98019 1.01175 1.20729 0.97528 0.96417 0.96524 1.20935 0.95601 0.96761 0.94953 1.20086 0.80384 0.83802 0.85576 1.90602 1.66657 1.29088 1.56714 1.46499 1.38013 1.18711 1.32115 1.18688 0.87000 0.97760 0.79949 0.93652 1.22069 0.98277 0.97608 1.02558 1.21243 1.02344 1.26523 1.06863 0.92162 1.24876 0.98393 0.95364 0.95031 1.69909 1.34883 1.37457 1.09813 0.86431 0.82921 0.79918 0.78049 1.19769 1.20896 1.20875 1.22269 0.99132 0.96088 1.00663 1.22561 0.91360 0.90779 0.97160 1.87848 1.33931 1.14874 1.93973 1.22774 0.96289 0.84191 0.99287 1.21995 0.96046 0.99077 0.99194 0.88415 0.88742 0.87524 0.90534 0.90892 0.78236 0.89265 0.96683 0.95607 0.92659 0.90333 0.90375 0.92724 0.88897 0.90772 0.89428 0.90012 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 14.32 29.01 0.42 -2.18 16 2 C -0.16 -2.30 8.11 -36.02 -0.29 -2.59 16 3 C -0.07 -0.96 4.72 -27.88 -0.13 -1.09 16 4 C -0.08 -1.14 0.44 -155.48 -0.07 -1.21 16 5 C 0.52 9.90 4.14 -10.99 -0.05 9.85 16 6 O -0.55 -12.62 13.80 5.56 0.08 -12.54 16 7 N -0.71 -14.28 4.95 -54.93 -0.27 -14.56 16 8 C 0.27 6.70 2.52 -69.08 -0.17 6.53 16 9 H 0.05 1.33 7.65 -51.93 -0.40 0.93 16 10 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 11 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 14 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 15 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.14 -1.80 4.81 -26.59 -0.13 -1.93 16 20 C 0.06 0.81 6.62 37.21 0.25 1.06 16 21 O -0.39 -5.91 10.77 -35.23 -0.38 -6.29 16 22 C 0.05 0.76 6.56 37.21 0.24 1.01 16 23 C -0.13 -1.73 4.29 -26.59 -0.11 -1.85 16 24 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 25 H 0.09 1.31 8.06 -52.48 -0.42 0.89 16 26 H 0.11 1.47 7.07 -52.49 -0.37 1.10 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 29 H 0.39 6.90 7.41 -40.82 -0.30 6.59 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.01 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.91 7.05 -51.93 -0.37 0.54 16 36 H 0.05 0.89 7.38 -51.93 -0.38 0.51 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.33 6.07 -51.93 -0.32 1.01 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.19 6.66 -51.93 -0.35 0.84 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -29.88 323.54 -6.72 -36.60 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.53 Total: 8.75 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.10 Total: -8.17 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.36 Total: -38.69 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.30 Total: -18.83 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.88 -6.72 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424624985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.600 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds